Wall clock time and date at job start Tue Mar 31 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46853 * 299.99764 * 3 2 1 6 6 H 1.48499 * 109.47205 * 59.99833 * 3 2 1 7 7 C 1.37882 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46555 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99677 * 90.00079 * 10 9 7 12 12 C 1.53000 * 109.47239 * 79.81236 * 11 10 9 13 13 C 1.52995 * 117.49922 * 243.62063 * 12 11 10 14 14 C 1.52993 * 60.00169 * 252.50639 * 13 12 11 15 15 C 1.34776 * 119.99870 * 269.99634 * 10 9 7 16 16 O 1.21550 * 120.00337 * 1.98092 * 15 10 9 17 17 C 1.47791 * 119.99520 * 181.98043 * 15 10 9 18 18 C 1.39614 * 120.13162 * 22.41602 * 17 15 10 19 19 C 1.37899 * 119.86288 * 179.79130 * 18 17 15 20 20 C 1.38514 * 120.13261 * 0.46396 * 19 18 17 21 21 Cl 1.73595 * 119.86732 * 179.76357 * 20 19 18 22 22 C 1.38515 * 120.26167 * 359.79360 * 20 19 18 23 23 C 1.37890 * 120.13371 * 359.96994 * 22 20 19 24 24 H 0.97003 * 119.99778 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47288 * 60.00083 * 9 7 2 26 26 H 1.08998 * 109.47394 * 299.99347 * 9 7 2 27 27 H 1.08998 * 109.47370 * 319.81174 * 11 10 9 28 28 H 1.08999 * 109.47039 * 199.81052 * 11 10 9 29 29 H 1.09004 * 115.54958 * 29.32512 * 12 11 10 30 30 H 1.09000 * 117.50144 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.50028 * 145.02245 * 13 12 11 32 32 H 1.08999 * 117.50431 * 252.51381 * 14 13 12 33 33 H 1.09005 * 117.50055 * 107.48497 * 14 13 12 34 34 H 1.07996 * 120.06633 * 0.02562 * 18 17 15 35 35 H 1.07996 * 119.92951 * 180.21087 * 19 18 17 36 36 H 1.07999 * 119.93032 * 179.97438 * 22 20 19 37 37 H 1.08008 * 120.06513 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6789 -4.1694 1.2693 12 6 1.6220 -5.1179 1.8386 13 6 0.9790 -4.7393 3.1742 14 6 1.9796 -5.8947 3.1072 15 6 2.6408 -4.1249 -1.1667 16 8 2.2739 -3.6398 -2.2190 17 6 3.5672 -5.2764 -1.1670 18 6 3.6329 -6.1233 -0.0589 19 6 4.4962 -7.1987 -0.0669 20 6 5.3039 -7.4338 -1.1673 21 17 6.3926 -8.7860 -1.1674 22 6 5.2469 -6.5939 -2.2673 23 6 4.3842 -5.5183 -2.2730 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 2.8592 -3.3598 1.9765 28 1 3.6058 -4.7175 1.1006 29 1 0.9943 -5.6191 1.1016 30 1 1.3086 -3.8143 3.6473 31 1 -0.0720 -4.9913 3.3163 32 1 1.5870 -6.9068 3.2051 33 1 2.9680 -5.7301 3.5363 34 1 3.0063 -5.9388 0.8010 35 1 4.5454 -7.8564 0.7883 36 1 5.8794 -6.7820 -3.1222 37 1 4.3410 -4.8638 -3.1311 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264090678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:31 Heat of formation + Delta-G solvation = 20.588597 kcal Electronic energy + Delta-G solvation = -21044.484424 eV Core-core repulsion = 17813.952749 eV Total energy + Delta-G solvation = -3230.531675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68893 -39.42207 -38.66527 -37.41500 -36.17862 -34.73594 -32.42603 -32.03210 -29.58573 -28.03342 -25.65566 -23.97713 -23.58248 -23.09984 -21.95654 -20.56088 -18.67790 -18.47575 -18.04089 -17.33948 -16.58583 -16.38803 -16.16994 -15.80364 -15.31869 -15.00305 -14.74659 -14.55443 -14.47324 -14.19275 -13.60511 -13.32877 -13.02387 -12.87656 -12.65106 -12.62509 -12.51798 -12.33900 -12.26859 -12.19398 -11.73143 -11.62462 -11.30923 -10.96060 -10.74333 -10.65903 -10.05132 -9.80511 -9.50507 -8.24231 -6.38695 -0.32801 0.22098 1.04224 1.35028 1.37497 1.49212 1.78577 2.15910 2.39498 2.65848 2.88600 3.05722 3.47247 3.70937 3.82058 3.87903 3.99231 4.11188 4.23617 4.29503 4.36407 4.49255 4.59682 4.78375 4.87942 4.91069 4.94552 5.07477 5.08679 5.11639 5.19484 5.26602 5.31985 5.34894 5.52848 5.63501 5.79412 6.03563 6.62489 6.70828 7.21501 7.36718 8.83336 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.004488 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.382485 B = 6237.386061 C = 7290.024057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.051 0.949 9 C 0.265 3.735 10 N -0.587 5.587 11 C 0.110 3.890 12 C -0.200 4.200 13 C -0.182 4.182 14 C -0.138 4.138 15 C 0.535 3.465 16 O -0.591 6.591 17 C -0.140 4.140 18 C -0.106 4.106 19 C -0.108 4.108 20 C -0.017 4.017 21 Cl -0.055 7.055 22 C -0.114 4.114 23 C -0.066 4.066 24 H 0.268 0.732 25 H -0.003 1.003 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -18.459 5.793 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.069 0.931 9 C 0.144 3.856 10 N -0.315 5.315 11 C -0.012 4.012 12 C -0.219 4.219 13 C -0.219 4.219 14 C -0.175 4.175 15 C 0.324 3.676 16 O -0.474 6.474 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.044 4.044 21 Cl -0.026 7.026 22 C -0.132 4.132 23 C -0.085 4.085 24 H 0.076 0.924 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.202 0.798 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.797 -18.187 5.286 21.801 hybrid contribution -0.192 1.383 -0.525 1.492 sum 10.606 -16.804 4.761 20.433 Atomic orbital electron populations 1.70054 1.07494 1.28112 1.50906 1.25820 0.95784 1.02907 0.94342 0.85385 0.78730 0.78735 0.78066 1.19267 1.20691 1.19244 1.21696 0.93163 0.91961 1.51405 0.93093 1.18750 0.87649 0.83315 0.95856 1.48055 1.44092 1.33560 1.05779 1.22170 0.97429 0.96895 0.84666 1.22646 1.03084 1.03784 0.92424 1.23055 0.99393 1.00536 0.98938 1.23171 1.00959 0.96904 0.96486 1.18943 0.81370 0.83628 0.83624 1.90706 1.60365 1.63585 1.32727 1.20103 0.99583 0.96965 0.97695 1.22789 0.98836 0.92668 0.98095 1.21357 0.95064 0.97645 0.98554 1.21337 0.95119 0.91477 0.96501 1.98382 1.62294 1.43315 1.98574 1.21160 0.99549 0.93645 0.98869 1.21242 0.93435 0.96838 0.96981 0.92354 0.98526 0.95264 0.91051 0.85965 0.88496 0.89203 0.88619 0.86221 0.86458 0.79759 0.81064 0.82256 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 2 C 0.01 0.62 5.46 84.66 0.46 1.08 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.86 9.39 25.60 0.24 -31.62 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.27 14.57 5.14 85.63 0.44 15.01 16 10 N -0.59 -25.79 2.47 -829.63 -2.05 -27.84 16 11 C 0.11 3.50 5.12 86.38 0.44 3.94 16 12 C -0.20 -5.17 4.03 -10.80 -0.04 -5.21 16 13 C -0.18 -4.34 10.18 30.59 0.31 -4.03 16 14 C -0.14 -2.28 9.98 30.59 0.31 -1.97 16 15 C 0.53 23.93 7.53 86.77 0.65 24.58 16 16 O -0.59 -32.35 16.16 -3.87 -0.06 -32.41 16 17 C -0.14 -4.62 5.62 -20.09 -0.11 -4.73 16 18 C -0.11 -2.58 7.53 22.52 0.17 -2.41 16 19 C -0.11 -2.01 9.81 22.26 0.22 -1.79 16 20 C -0.02 -0.34 6.33 22.40 0.14 -0.20 16 21 Cl -0.05 -0.89 28.95 -2.72 -0.08 -0.97 16 22 C -0.11 -2.49 9.81 22.25 0.22 -2.27 16 23 C -0.07 -1.92 9.59 22.52 0.22 -1.71 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.00 -0.21 7.45 -2.39 -0.02 -0.23 16 26 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 27 H 0.07 2.39 7.87 -2.39 -0.02 2.38 16 28 H 0.12 3.21 4.26 -2.39 -0.01 3.20 16 29 H 0.10 2.74 8.13 -2.38 -0.02 2.72 16 30 H 0.09 2.30 8.03 -2.39 -0.02 2.29 16 31 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.19 4.12 2.34 -2.91 -0.01 4.11 16 35 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.13 4.04 7.82 -2.91 -0.02 4.02 16 Total: -1.00 -73.84 327.86 4.87 -68.97 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.09 Total: 12.21 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 3.66 Total: -11.33 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.76 Total: -83.79 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.06 Total: -32.41 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -73.84 4.87 -68.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264090678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.562 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds