Wall clock time and date at job start Tue Mar 31 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76206 * 99.99956 * 2 1 4 4 N 1.33061 * 120.64988 * 0.25811 * 3 2 1 5 5 C 1.31644 * 120.83539 * 180.30900 * 4 3 2 6 6 C 1.50704 * 118.87286 * 179.70348 * 5 4 3 7 7 C 1.53006 * 117.49439 * 8.72558 * 6 5 4 8 8 C 1.53005 * 117.49734 * 300.07079 * 6 5 4 9 9 N 1.31995 * 122.25849 * 359.68476 * 5 4 3 10 10 C 1.32206 * 121.21969 * 0.02562 * 9 5 4 11 11 C 1.50698 * 120.50513 * 180.02562 * 10 9 5 12 12 C 1.39818 * 118.99241 * 359.97438 * 10 9 5 13 13 C 1.47300 * 121.00250 * 179.97438 * 12 10 9 14 14 O 1.21643 * 120.00077 * 90.00255 * 13 12 10 15 15 N 1.34777 * 119.99880 * 269.72894 * 13 12 10 16 16 C 1.36909 * 120.00138 * 180.27572 * 15 13 12 17 17 H 1.08001 * 119.99616 * 0.02562 * 16 15 13 18 18 C 1.39014 * 120.00075 * 179.97438 * 16 15 13 19 19 N 1.31384 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99904 * 20 18 16 22 22 H 1.48497 * 109.46782 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99976 * 20 18 16 24 24 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47244 * 60.00059 * 1 2 3 27 27 H 1.08993 * 115.55064 * 154.39412 * 6 5 4 28 28 H 1.08992 * 117.49962 * 0.02562 * 7 6 5 29 29 H 1.08998 * 117.49467 * 145.01739 * 7 6 5 30 30 H 1.08995 * 117.49762 * 214.97678 * 8 6 5 31 31 H 1.08993 * 117.49614 * 359.97375 * 8 6 5 32 32 H 1.09000 * 109.47007 * 269.97943 * 11 10 9 33 33 H 1.09008 * 109.46978 * 29.97290 * 11 10 9 34 34 H 1.09000 * 109.47220 * 149.97099 * 11 10 9 35 35 H 0.97000 * 119.99736 * 0.27066 * 15 13 12 36 36 H 0.96996 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1064 2.6021 0.0052 5 6 1.3308 3.8993 -0.0009 6 6 0.1544 4.8412 -0.0015 7 6 -1.2349 4.2364 0.2109 8 6 -0.8255 4.7470 -1.1729 9 7 2.5507 4.4032 -0.0061 10 6 3.6157 3.6199 -0.0060 11 6 5.0012 4.2126 -0.0114 12 6 3.4370 2.2332 0.0003 13 6 4.5923 1.3194 0.0002 14 8 5.0729 0.9463 1.0535 15 7 5.1134 0.8921 -1.1671 16 6 6.1836 0.0383 -1.1672 17 1 6.6100 -0.2932 -0.2319 18 6 6.7208 -0.4028 -2.3711 19 7 6.2011 -0.0006 -3.5089 20 14 8.1805 -1.5683 -2.3713 21 1 7.8143 -2.8204 -1.6617 22 1 8.5599 -1.8862 -3.7714 23 1 9.3274 -0.9254 -1.6809 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.3429 5.8290 0.4188 28 1 -1.2980 3.1575 0.3514 29 1 -1.9605 4.8266 0.7706 30 1 -1.2818 5.6729 -1.5229 31 1 -0.6190 4.0041 -1.9432 32 1 5.3329 4.3516 -1.0404 33 1 4.9864 5.1758 0.4987 34 1 5.6865 3.5393 0.5035 35 1 4.7301 1.1896 -2.0070 36 1 6.5761 -0.3081 -4.3489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266152162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:46 Heat of formation + Delta-G solvation = 29.749735 kcal Electronic energy + Delta-G solvation = -21014.215131 eV Core-core repulsion = 17818.417171 eV Total energy + Delta-G solvation = -3195.797961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87643 -38.20865 -36.93243 -34.14337 -34.02754 -32.14455 -31.13719 -28.98926 -28.33036 -25.99622 -24.44988 -23.48078 -22.45313 -21.01868 -19.70531 -18.11789 -18.03035 -17.13869 -16.40428 -15.74422 -15.10621 -14.88421 -14.63060 -13.98810 -13.97639 -13.50973 -13.41798 -13.09186 -12.94836 -12.76739 -12.40396 -12.20288 -11.93820 -11.66875 -11.63566 -11.20282 -11.11305 -11.06706 -10.56270 -10.49717 -10.40674 -10.36179 -10.30594 -9.61381 -9.18148 -9.06030 -8.56813 -8.08898 -7.50545 -6.51497 -3.91841 0.95653 1.16713 1.59669 2.30387 3.13642 3.22352 3.26349 3.46450 3.65381 3.82868 4.04917 4.10561 4.34517 4.69775 4.79525 4.90278 4.95410 5.03525 5.15951 5.22787 5.25895 5.46232 5.52418 5.67075 5.69683 5.83225 5.85672 5.95983 6.05641 6.09810 6.11540 6.21440 6.56245 7.06503 7.46183 7.92700 8.23708 8.46597 9.04892 9.39161 9.89303 10.65045 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.004884 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.320313 B = 5731.347302 C = 6331.290263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.002 6.002 3 C 0.178 3.822 4 N -0.530 5.530 5 C 0.360 3.640 6 C -0.095 4.095 7 C -0.155 4.155 8 C -0.156 4.156 9 N -0.525 5.525 10 C 0.217 3.783 11 C -0.108 4.108 12 C -0.182 4.182 13 C 0.481 3.519 14 O -0.579 6.579 15 N -0.534 5.534 16 C -0.303 4.303 17 H 0.107 0.893 18 C 0.029 3.971 19 N -0.892 5.892 20 Si 0.933 3.067 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.393 0.607 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 6.672 2.494 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.237 5.763 3 C -0.078 4.078 4 N -0.249 5.249 5 C 0.090 3.910 6 C -0.116 4.116 7 C -0.193 4.193 8 C -0.194 4.194 9 N -0.242 5.242 10 C 0.070 3.930 11 C -0.165 4.165 12 C -0.197 4.197 13 C 0.265 3.735 14 O -0.465 6.465 15 N -0.167 5.167 16 C -0.432 4.432 17 H 0.125 0.875 18 C -0.174 4.174 19 N -0.531 5.531 20 Si 0.759 3.241 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.146 0.854 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.227 0.773 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.360 5.905 2.979 14.018 hybrid contribution 0.313 0.148 -0.612 0.703 sum -12.048 6.053 2.367 13.689 Atomic orbital electron populations 1.23531 0.95972 1.05962 1.06597 1.86656 1.05177 0.95429 1.89079 1.23816 0.90612 0.99659 0.93732 1.68342 1.33726 1.03577 1.19282 1.21981 0.91081 0.87749 0.90179 1.20583 0.86624 0.98295 1.06067 1.23004 0.94994 1.02344 0.98957 1.22979 1.01271 1.03342 0.91827 1.67916 0.98516 1.40433 1.17331 1.21787 0.95506 0.88203 0.87524 1.20838 0.89634 1.01888 1.04148 1.21527 0.95224 0.96293 1.06681 1.16996 0.85230 0.85798 0.85483 1.90664 1.63452 1.61319 1.31056 1.41795 1.28345 1.40344 1.06243 1.19694 1.06883 1.22010 0.94655 0.87540 1.25325 0.99279 0.98286 0.94534 1.69602 1.41526 1.44273 0.97747 0.85889 0.80730 0.80273 0.77211 1.19662 1.20867 1.19689 0.88069 0.89473 0.89431 0.85385 0.87432 0.88310 0.88010 0.88578 0.89191 0.89928 0.89106 0.77308 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.69 101.05 0.98 -0.91 16 2 S 0.00 -0.04 21.85 -107.50 -2.35 -2.39 16 3 C 0.18 3.47 7.06 -15.90 -0.11 3.36 16 4 N -0.53 -9.13 8.19 -9.12 -0.07 -9.20 16 5 C 0.36 5.99 7.31 -157.15 -1.15 4.85 16 6 C -0.10 -1.18 6.23 -91.76 -0.57 -1.75 16 7 C -0.16 -1.56 10.01 -26.69 -0.27 -1.83 16 8 C -0.16 -1.60 10.24 -26.69 -0.27 -1.87 16 9 N -0.53 -9.42 10.24 -6.71 -0.07 -9.49 16 10 C 0.22 4.16 6.86 -81.84 -0.56 3.60 16 11 C -0.11 -1.80 9.85 36.00 0.35 -1.44 16 12 C -0.18 -3.89 5.68 -104.51 -0.59 -4.48 16 13 C 0.48 11.80 4.91 -12.58 -0.06 11.73 16 14 O -0.58 -16.07 16.68 5.24 0.09 -15.99 16 15 N -0.53 -13.58 5.28 -11.99 -0.06 -13.65 16 16 C -0.30 -8.22 9.68 -15.00 -0.15 -8.36 16 17 H 0.11 3.01 7.15 -52.49 -0.38 2.63 16 18 C 0.03 0.76 5.50 -17.46 -0.10 0.66 16 19 N -0.89 -23.66 13.05 55.50 0.72 -22.93 16 20 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 25 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 26 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.11 1.19 7.53 -51.93 -0.39 0.80 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 34 H 0.09 1.67 7.18 -51.93 -0.37 1.30 16 35 H 0.39 9.92 7.88 -40.82 -0.32 9.59 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -30.83 330.49 -8.68 -39.51 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.40 Total: 10.23 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.50 Total: 3.55 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.52 Total: -55.27 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.35 Total: -2.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.83 -8.68 -39.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266152162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.259 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds