Wall clock time and date at job start Tue Mar 31 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76206 * 99.99956 * 2 1 4 4 N 1.33061 * 120.64988 * 0.25811 * 3 2 1 5 5 C 1.31644 * 120.83539 * 180.30900 * 4 3 2 6 6 C 1.50704 * 118.87286 * 179.70348 * 5 4 3 7 7 C 1.53006 * 117.49439 * 8.72558 * 6 5 4 8 8 C 1.53005 * 117.49734 * 300.07079 * 6 5 4 9 9 N 1.31995 * 122.25849 * 359.68476 * 5 4 3 10 10 C 1.32206 * 121.21969 * 0.02562 * 9 5 4 11 11 C 1.50698 * 120.50513 * 180.02562 * 10 9 5 12 12 C 1.39818 * 118.99241 * 359.97438 * 10 9 5 13 13 C 1.47300 * 121.00250 * 179.97438 * 12 10 9 14 14 O 1.21643 * 120.00077 * 90.00255 * 13 12 10 15 15 N 1.34777 * 119.99880 * 269.72894 * 13 12 10 16 16 C 1.36909 * 120.00138 * 180.27572 * 15 13 12 17 17 H 1.08001 * 119.99616 * 0.02562 * 16 15 13 18 18 C 1.39014 * 120.00075 * 179.97438 * 16 15 13 19 19 N 1.31384 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99906 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47034 * 59.99904 * 20 18 16 22 22 H 1.48497 * 109.46782 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46993 * 299.99976 * 20 18 16 24 24 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47265 * 299.99896 * 1 2 3 26 26 H 1.09002 * 109.47244 * 60.00059 * 1 2 3 27 27 H 1.08993 * 115.55064 * 154.39412 * 6 5 4 28 28 H 1.08992 * 117.49962 * 0.02562 * 7 6 5 29 29 H 1.08998 * 117.49467 * 145.01739 * 7 6 5 30 30 H 1.08995 * 117.49762 * 214.97678 * 8 6 5 31 31 H 1.08993 * 117.49614 * 359.97375 * 8 6 5 32 32 H 1.09000 * 109.47007 * 269.97943 * 11 10 9 33 33 H 1.09008 * 109.46978 * 29.97290 * 11 10 9 34 34 H 1.09000 * 109.47220 * 149.97099 * 11 10 9 35 35 H 0.97000 * 119.99736 * 0.27066 * 15 13 12 36 36 H 0.96996 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1064 2.6021 0.0052 5 6 1.3308 3.8993 -0.0009 6 6 0.1544 4.8412 -0.0015 7 6 -1.2349 4.2364 0.2109 8 6 -0.8255 4.7470 -1.1729 9 7 2.5507 4.4032 -0.0061 10 6 3.6157 3.6199 -0.0060 11 6 5.0012 4.2126 -0.0114 12 6 3.4370 2.2332 0.0003 13 6 4.5923 1.3194 0.0002 14 8 5.0729 0.9463 1.0535 15 7 5.1134 0.8921 -1.1671 16 6 6.1836 0.0383 -1.1672 17 1 6.6100 -0.2932 -0.2319 18 6 6.7208 -0.4028 -2.3711 19 7 6.2011 -0.0006 -3.5089 20 14 8.1805 -1.5683 -2.3713 21 1 7.8143 -2.8204 -1.6617 22 1 8.5599 -1.8862 -3.7714 23 1 9.3274 -0.9254 -1.6809 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.3429 5.8290 0.4188 28 1 -1.2980 3.1575 0.3514 29 1 -1.9605 4.8266 0.7706 30 1 -1.2818 5.6729 -1.5229 31 1 -0.6190 4.0041 -1.9432 32 1 5.3329 4.3516 -1.0404 33 1 4.9864 5.1758 0.4987 34 1 5.6865 3.5393 0.5035 35 1 4.7301 1.1896 -2.0070 36 1 6.5761 -0.3081 -4.3489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266152162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:45 Heat of formation + Delta-G solvation = 10.330548 kcal Electronic energy + Delta-G solvation = -21015.057210 eV Core-core repulsion = 17818.417171 eV Total energy + Delta-G solvation = -3196.640040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29530 -40.03988 -37.98889 -36.07555 -35.51455 -33.76047 -33.00479 -30.17660 -29.64367 -27.64644 -26.12723 -24.84457 -23.23868 -22.41814 -21.32669 -20.12290 -19.39957 -18.55895 -18.19538 -16.92493 -16.80238 -16.41675 -15.91485 -15.67399 -15.18575 -14.97555 -14.96266 -14.62190 -14.52165 -14.04601 -13.61835 -13.59029 -13.29521 -13.23927 -12.93444 -12.70100 -12.48693 -12.33389 -12.29621 -12.12146 -11.67210 -11.59458 -11.56675 -11.41020 -10.69408 -10.50948 -10.37403 -10.12058 -8.95157 -8.52043 -6.01693 -0.50811 -0.28757 0.18671 1.10207 1.37127 1.43008 1.54130 1.82169 2.21358 2.29204 2.61965 2.87320 3.00120 3.11382 3.14224 3.49331 3.85298 3.89834 4.07501 4.11901 4.16231 4.26837 4.30909 4.41044 4.52003 4.67586 4.77179 4.79056 4.86624 4.96171 5.14253 5.20065 5.31560 5.36748 5.60993 5.89920 6.44822 6.82937 7.01068 7.38112 7.91169 8.64493 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.004884 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.320313 B = 5731.347302 C = 6331.290263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.060 6.060 3 C 0.180 3.820 4 N -0.521 5.521 5 C 0.359 3.641 6 C -0.120 4.120 7 C -0.139 4.139 8 C -0.142 4.142 9 N -0.529 5.529 10 C 0.216 3.784 11 C -0.103 4.103 12 C -0.225 4.225 13 C 0.496 3.504 14 O -0.620 6.620 15 N -0.537 5.537 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.003 4.003 19 N -0.912 5.912 20 Si 0.996 3.004 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.268 1.268 24 H 0.130 0.870 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.144 0.856 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.392 0.608 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 7.593 2.056 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.179 5.821 3 C -0.077 4.077 4 N -0.241 5.241 5 C 0.090 3.910 6 C -0.140 4.140 7 C -0.177 4.177 8 C -0.180 4.180 9 N -0.246 5.246 10 C 0.069 3.931 11 C -0.161 4.161 12 C -0.239 4.239 13 C 0.281 3.719 14 O -0.508 6.508 15 N -0.170 5.170 16 C -0.465 4.465 17 H 0.105 0.895 18 C -0.205 4.205 19 N -0.552 5.552 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.192 1.192 24 H 0.149 0.851 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.162 0.838 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.345 6.843 2.524 16.093 hybrid contribution 0.747 -0.087 -0.471 0.887 sum -13.598 6.757 2.053 15.322 Atomic orbital electron populations 1.23610 0.90695 1.08088 1.07311 1.86823 1.11087 0.95362 1.88815 1.23901 0.90412 1.00475 0.92881 1.68492 1.32378 1.03646 1.19548 1.23006 0.92092 0.88286 0.87633 1.20840 0.86042 0.98289 1.08853 1.23123 0.93454 1.02140 0.98961 1.23083 0.99488 1.04242 0.91229 1.68067 0.98672 1.39791 1.18092 1.22083 0.96895 0.87615 0.86505 1.20848 0.88022 1.02466 1.04727 1.21302 0.94783 0.96717 1.11146 1.17316 0.85175 0.84980 0.84388 1.90609 1.65020 1.62844 1.32325 1.41777 1.28306 1.40471 1.06453 1.19696 1.08372 1.23843 0.94555 0.89530 1.26121 1.01439 0.99193 0.93708 1.69669 1.42478 1.44789 0.98231 0.84951 0.77381 0.78032 0.77787 1.19513 1.19402 1.19246 0.85142 0.88590 0.88699 0.83822 0.88499 0.85294 0.85087 0.90032 0.88292 0.87114 0.91447 0.77446 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.69 113.37 1.10 -1.88 16 2 S -0.06 -2.17 21.85 -56.49 -1.23 -3.40 16 3 C 0.18 7.11 7.06 85.23 0.60 7.71 16 4 N -0.52 -17.54 8.19 -182.76 -1.50 -19.03 16 5 C 0.36 11.49 7.31 138.74 1.01 12.50 16 6 C -0.12 -2.64 6.23 -11.53 -0.07 -2.72 16 7 C -0.14 -2.30 10.01 30.62 0.31 -1.99 16 8 C -0.14 -2.43 10.24 30.62 0.31 -2.12 16 9 N -0.53 -18.61 10.24 -175.15 -1.79 -20.41 16 10 C 0.22 8.41 6.86 42.88 0.29 8.71 16 11 C -0.10 -3.51 9.85 71.24 0.70 -2.80 16 12 C -0.22 -9.89 5.68 -19.79 -0.11 -10.00 16 13 C 0.50 25.54 4.91 86.63 0.42 25.96 16 14 O -0.62 -36.30 16.68 -4.17 -0.07 -36.37 16 15 N -0.54 -28.62 5.28 -310.09 -1.64 -30.26 16 16 C -0.34 -18.93 9.68 84.09 0.81 -18.12 16 17 H 0.09 5.15 7.15 -2.91 -0.02 5.13 16 18 C 0.00 -0.17 5.50 84.95 0.47 0.30 16 19 N -0.91 -48.82 13.05 21.68 0.28 -48.54 16 20 Si 1.00 41.99 29.55 68.60 2.03 44.02 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H 0.13 2.28 8.14 -2.40 -0.02 2.26 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.10 1.85 7.53 -2.39 -0.02 1.84 16 29 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 34 H 0.07 2.60 7.18 -2.39 -0.02 2.58 16 35 H 0.39 20.69 7.88 -92.71 -0.73 19.96 16 36 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -69.14 330.49 2.32 -66.82 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.39 Total: 31.62 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.85 Total: 15.56 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.65 Total: -118.24 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.07 Total: -36.37 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -1.23 Total: -3.40 kcal Total: -69.14 2.32 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266152162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.150 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds