Wall clock time and date at job start Tue Mar 31 2020 07:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34804 * 120.00237 * 2 1 4 4 C 1.47216 * 119.99842 * 349.81346 * 3 2 1 5 5 C 1.39854 * 120.16066 * 326.30195 * 4 3 2 6 6 C 1.37872 * 119.85094 * 179.74772 * 5 4 3 7 7 C 1.38404 * 120.18671 * 0.53736 * 6 5 4 8 8 C 1.38491 * 120.32692 * 359.73697 * 7 6 5 9 9 Cl 1.73604 * 119.92368 * 180.02562 * 8 7 6 10 10 C 1.38033 * 120.14892 * 359.97438 * 8 7 6 11 11 C 1.46435 * 119.99787 * 180.02562 * 2 1 3 12 12 O 1.21703 * 119.99657 * 216.12914 * 11 2 1 13 13 N 1.34771 * 120.00425 * 36.13372 * 11 2 1 14 14 C 1.46511 * 119.99805 * 5.45209 * 13 11 2 15 15 C 1.46491 * 120.00383 * 185.45555 * 13 11 2 16 16 C 1.50700 * 109.47329 * 89.99766 * 15 13 11 17 17 H 1.08001 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00271 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00283 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00009 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46809 * 89.99971 * 20 18 16 22 22 H 1.48499 * 109.47435 * 209.99859 * 20 18 16 23 23 H 1.48499 * 109.47388 * 330.00518 * 20 18 16 24 24 H 1.09006 * 109.46626 * 82.45317 * 1 2 3 25 25 H 1.09001 * 109.47072 * 202.44899 * 1 2 3 26 26 H 1.09000 * 109.47154 * 322.45335 * 1 2 3 27 27 H 1.08000 * 120.00074 * 169.53075 * 3 2 1 28 28 H 1.08002 * 120.07503 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.90984 * 180.24941 * 6 5 4 30 30 H 1.07995 * 119.83397 * 179.71966 * 7 6 5 31 31 H 1.07999 * 120.09585 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.46889 * 83.72637 * 14 13 11 33 33 H 1.08989 * 109.46997 * 203.72674 * 14 13 11 34 34 H 1.08998 * 109.46988 * 323.72758 * 14 13 11 35 35 H 1.09001 * 109.47291 * 210.00037 * 15 13 11 36 36 H 1.09006 * 109.47110 * 329.99963 * 15 13 11 37 37 H 0.97001 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 1.4624 2.4323 -0.2255 5 6 0.3577 2.4697 -1.0824 6 6 -0.3138 3.6567 -1.2849 7 6 0.1091 4.8124 -0.6514 8 6 1.2055 4.7851 0.1942 9 17 1.7265 6.2408 0.9839 10 6 1.8843 3.6030 0.4114 11 6 2.2391 -1.2682 -0.0006 12 8 3.2806 -1.3698 0.6208 13 7 1.7597 -2.3228 -0.6892 14 6 0.5720 -2.1680 -1.5331 15 6 2.4260 -3.6239 -0.5941 16 6 1.8266 -4.4136 0.5409 17 1 1.0287 -3.9888 1.1319 18 6 2.2967 -5.6782 0.8247 19 7 1.7738 -6.3672 1.8156 20 14 3.6762 -6.4132 -0.1980 21 1 4.9847 -6.0603 0.4093 22 1 3.5308 -7.8906 -0.2367 23 1 3.6101 -5.8730 -1.5797 24 1 -0.3633 0.1350 -1.0188 25 1 -0.3633 -0.9498 0.3924 26 1 -0.3633 0.8148 0.6263 27 1 3.2475 1.1752 0.1700 28 1 0.0287 1.5699 -1.5809 29 1 -1.1695 3.6859 -1.9433 30 1 -0.4184 5.7400 -0.8177 31 1 2.7390 3.5827 1.0714 32 1 0.8664 -1.7744 -2.5059 33 1 0.0905 -3.1370 -1.6638 34 1 -0.1242 -1.4775 -1.0572 35 1 2.2915 -4.1702 -1.5277 36 1 3.4901 -3.4747 -0.4106 37 1 2.1043 -7.2571 2.0150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270292937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:03 Heat of formation + Delta-G solvation = 20.432328 kcal Electronic energy + Delta-G solvation = -20367.443585 eV Core-core repulsion = 17136.905134 eV Total energy + Delta-G solvation = -3230.538451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97527 -39.05385 -36.81549 -35.08334 -34.96742 -32.56964 -31.47047 -30.51004 -28.44524 -27.55835 -25.95402 -23.81424 -22.77264 -22.34469 -20.24718 -18.24403 -16.97882 -16.92835 -16.32476 -16.02653 -15.66619 -15.22326 -14.63728 -14.33881 -14.22484 -13.77158 -13.74072 -13.46798 -12.99017 -12.63463 -12.41256 -12.35352 -12.17838 -11.87687 -11.65185 -11.55744 -11.45387 -11.18089 -11.10950 -10.72995 -10.51619 -10.16116 -9.88148 -9.56702 -9.13539 -9.07060 -8.61170 -8.34837 -7.71289 -6.11126 -4.10420 0.51527 0.93376 1.80671 1.91297 3.28069 3.34123 3.35907 3.36520 3.63196 3.81505 4.37793 4.49264 4.52490 4.73300 4.86327 4.99122 5.02685 5.09014 5.22212 5.30585 5.48156 5.52134 5.59588 5.71472 5.82795 5.88444 5.92425 6.00704 6.04198 6.20353 6.38051 6.48477 6.52471 6.70387 6.93446 7.29816 7.57864 8.19173 8.43676 8.86088 8.93062 9.48877 11.02119 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.003001 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.394977 B = 9327.025083 C = 9673.648925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C -0.079 4.079 4 C -0.036 4.036 5 C -0.109 4.109 6 C -0.108 4.108 7 C -0.113 4.113 8 C -0.035 4.035 9 Cl -0.074 7.074 10 C -0.098 4.098 11 C 0.543 3.457 12 O -0.541 6.541 13 N -0.587 5.587 14 C 0.050 3.950 15 C 0.214 3.786 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 22.132 -8.398 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.132 4.132 3 C -0.099 4.099 4 C -0.036 4.036 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.132 4.132 8 C -0.061 4.061 9 Cl -0.045 7.045 10 C -0.116 4.116 11 C 0.331 3.669 12 O -0.419 6.419 13 N -0.318 5.318 14 C -0.094 4.094 15 C 0.093 3.907 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.232 21.977 -7.918 23.939 hybrid contribution 0.719 -0.450 -0.293 0.897 sum -4.514 21.528 -8.211 23.478 Atomic orbital electron populations 1.21368 0.91243 1.03558 1.01993 1.22004 0.96409 0.93539 1.01242 1.21955 1.00079 0.89400 0.98452 1.18948 0.95270 0.92710 0.96666 1.21835 0.94422 0.98884 0.97507 1.21061 1.00111 0.91826 0.99601 1.21133 0.95756 0.99498 0.96781 1.20815 0.98083 0.87974 0.99252 1.98375 1.90299 1.36350 1.79475 1.21271 1.00274 0.90310 0.99778 1.18013 0.85193 0.83586 0.80152 1.90796 1.23770 1.83880 1.43494 1.47678 1.28683 1.10605 1.44830 1.22462 0.88877 1.04039 0.93977 1.19717 0.94254 0.79177 0.97508 1.21323 1.20845 0.99944 1.14826 0.90726 1.24856 0.96404 0.96755 0.94968 1.69896 1.42394 1.12145 1.29083 0.86840 0.83179 0.78426 0.81196 1.19847 1.21029 1.19045 0.90095 0.89980 0.90960 0.84629 0.84171 0.84845 0.85072 0.84528 0.93857 0.90572 0.89367 0.95116 0.94379 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 6.13 36.00 0.22 -1.24 16 2 C -0.13 -1.95 5.39 -102.54 -0.55 -2.50 16 3 C -0.08 -1.07 9.37 -37.15 -0.35 -1.42 16 4 C -0.04 -0.39 5.24 -105.06 -0.55 -0.94 16 5 C -0.11 -0.99 7.96 -39.11 -0.31 -1.30 16 6 C -0.11 -0.83 10.03 -39.65 -0.40 -1.23 16 7 C -0.11 -0.94 9.82 -39.43 -0.39 -1.32 16 8 C -0.03 -0.34 6.31 -39.56 -0.25 -0.59 16 9 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 10 C -0.10 -1.03 9.57 -39.07 -0.37 -1.40 16 11 C 0.54 11.21 7.27 -12.96 -0.09 11.12 16 12 O -0.54 -13.50 16.25 5.19 0.08 -13.41 16 13 N -0.59 -12.10 2.86 -184.61 -0.53 -12.62 16 14 C 0.05 0.74 9.93 59.85 0.59 1.34 16 15 C 0.21 5.25 4.24 -5.20 -0.02 5.23 16 16 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 17 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 20 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 24 H 0.08 0.69 5.12 -51.93 -0.27 0.43 16 25 H 0.08 1.07 6.83 -51.93 -0.35 0.71 16 26 H 0.07 0.77 7.07 -51.93 -0.37 0.40 16 27 H 0.14 1.92 7.85 -52.49 -0.41 1.51 16 28 H 0.14 1.10 5.16 -52.49 -0.27 0.83 16 29 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.18 8.02 -51.94 -0.42 0.76 16 34 H 0.09 1.08 2.74 -51.94 -0.14 0.94 16 35 H 0.03 0.72 7.13 -51.93 -0.37 0.34 16 36 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -34.09 322.29 -8.13 -42.22 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.23 Total: -1.10 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.91 Total: -7.81 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.25 Total: -39.44 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.09 -8.13 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270292937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.648 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds