Wall clock time and date at job start Tue Mar 31 2020 07:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34804 * 120.00237 * 2 1 4 4 C 1.47216 * 119.99842 * 349.81346 * 3 2 1 5 5 C 1.39854 * 120.16066 * 326.30195 * 4 3 2 6 6 C 1.37872 * 119.85094 * 179.74772 * 5 4 3 7 7 C 1.38404 * 120.18671 * 0.53736 * 6 5 4 8 8 C 1.38491 * 120.32692 * 359.73697 * 7 6 5 9 9 Cl 1.73604 * 119.92368 * 180.02562 * 8 7 6 10 10 C 1.38033 * 120.14892 * 359.97438 * 8 7 6 11 11 C 1.46435 * 119.99787 * 180.02562 * 2 1 3 12 12 O 1.21703 * 119.99657 * 216.12914 * 11 2 1 13 13 N 1.34771 * 120.00425 * 36.13372 * 11 2 1 14 14 C 1.46511 * 119.99805 * 5.45209 * 13 11 2 15 15 C 1.46491 * 120.00383 * 185.45555 * 13 11 2 16 16 C 1.50700 * 109.47329 * 89.99766 * 15 13 11 17 17 H 1.08001 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00271 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00283 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00009 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46809 * 89.99971 * 20 18 16 22 22 H 1.48499 * 109.47435 * 209.99859 * 20 18 16 23 23 H 1.48499 * 109.47388 * 330.00518 * 20 18 16 24 24 H 1.09006 * 109.46626 * 82.45317 * 1 2 3 25 25 H 1.09001 * 109.47072 * 202.44899 * 1 2 3 26 26 H 1.09000 * 109.47154 * 322.45335 * 1 2 3 27 27 H 1.08000 * 120.00074 * 169.53075 * 3 2 1 28 28 H 1.08002 * 120.07503 * 0.02562 * 5 4 3 29 29 H 1.08004 * 119.90984 * 180.24941 * 6 5 4 30 30 H 1.07995 * 119.83397 * 179.71966 * 7 6 5 31 31 H 1.07999 * 120.09585 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.46889 * 83.72637 * 14 13 11 33 33 H 1.08989 * 109.46997 * 203.72674 * 14 13 11 34 34 H 1.08998 * 109.46988 * 323.72758 * 14 13 11 35 35 H 1.09001 * 109.47291 * 210.00037 * 15 13 11 36 36 H 1.09006 * 109.47110 * 329.99963 * 15 13 11 37 37 H 0.97001 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 1.4624 2.4323 -0.2255 5 6 0.3577 2.4697 -1.0824 6 6 -0.3138 3.6567 -1.2849 7 6 0.1091 4.8124 -0.6514 8 6 1.2055 4.7851 0.1942 9 17 1.7265 6.2408 0.9839 10 6 1.8843 3.6030 0.4114 11 6 2.2391 -1.2682 -0.0006 12 8 3.2806 -1.3698 0.6208 13 7 1.7597 -2.3228 -0.6892 14 6 0.5720 -2.1680 -1.5331 15 6 2.4260 -3.6239 -0.5941 16 6 1.8266 -4.4136 0.5409 17 1 1.0287 -3.9888 1.1319 18 6 2.2967 -5.6782 0.8247 19 7 1.7738 -6.3672 1.8156 20 14 3.6762 -6.4132 -0.1980 21 1 4.9847 -6.0603 0.4093 22 1 3.5308 -7.8906 -0.2367 23 1 3.6101 -5.8730 -1.5797 24 1 -0.3633 0.1350 -1.0188 25 1 -0.3633 -0.9498 0.3924 26 1 -0.3633 0.8148 0.6263 27 1 3.2475 1.1752 0.1700 28 1 0.0287 1.5699 -1.5809 29 1 -1.1695 3.6859 -1.9433 30 1 -0.4184 5.7400 -0.8177 31 1 2.7390 3.5827 1.0714 32 1 0.8664 -1.7744 -2.5059 33 1 0.0905 -3.1370 -1.6638 34 1 -0.1242 -1.4775 -1.0572 35 1 2.2915 -4.1702 -1.5277 36 1 3.4901 -3.4747 -0.4106 37 1 2.1043 -7.2571 2.0150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270292937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:02 Heat of formation + Delta-G solvation = -0.646847 kcal Electronic energy + Delta-G solvation = -20368.357647 eV Core-core repulsion = 17136.905134 eV Total energy + Delta-G solvation = -3231.452513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15611 -40.15649 -37.57188 -36.75566 -36.08090 -34.64843 -32.30736 -31.46495 -30.09321 -28.74759 -27.20426 -25.37533 -23.64707 -23.47678 -21.54354 -19.56092 -19.16080 -17.72419 -17.59055 -17.34254 -16.76629 -16.36445 -16.18772 -15.83712 -15.14977 -14.99015 -14.58164 -14.53995 -14.36382 -14.12099 -13.76376 -13.62923 -13.55661 -13.19427 -13.05587 -12.65058 -12.50767 -12.37256 -12.21414 -12.12595 -11.87195 -11.83022 -11.73524 -10.87711 -10.84259 -10.62127 -9.78376 -9.45307 -9.20299 -8.36120 -6.41715 -0.36996 0.23711 0.85724 1.14840 1.31563 1.35879 1.44281 2.07874 2.29401 2.33189 2.71895 2.98122 3.49038 3.84723 3.89662 3.98772 4.06050 4.20576 4.36170 4.39741 4.52197 4.63547 4.66007 4.77096 4.83174 4.87251 4.90991 4.94381 5.07302 5.15993 5.22290 5.32358 5.42929 5.47576 5.56354 5.61396 5.82080 6.21407 6.59478 6.64549 7.17386 7.32931 8.80668 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.003001 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.394977 B = 9327.025083 C = 9673.648925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.151 4.151 3 C -0.053 4.053 4 C -0.056 4.056 5 C -0.102 4.102 6 C -0.100 4.100 7 C -0.106 4.106 8 C -0.048 4.048 9 Cl -0.075 7.075 10 C -0.108 4.108 11 C 0.532 3.468 12 O -0.602 6.602 13 N -0.596 5.596 14 C 0.041 3.959 15 C 0.221 3.779 16 C -0.539 4.539 17 H 0.031 0.969 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.273 1.273 23 H -0.238 1.238 24 H 0.119 0.881 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.158 0.842 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 23.971 -11.200 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C -0.072 4.072 4 C -0.056 4.056 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.124 4.124 8 C -0.074 4.074 9 Cl -0.047 7.047 10 C -0.126 4.126 11 C 0.322 3.678 12 O -0.485 6.485 13 N -0.325 5.325 14 C -0.099 4.099 15 C 0.098 3.902 16 C -0.577 4.577 17 H 0.049 0.951 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.198 1.198 23 H -0.161 1.161 24 H 0.137 0.863 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.176 0.824 29 H 0.187 0.813 30 H 0.171 0.829 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.731 23.842 -10.759 27.009 hybrid contribution 1.119 -0.850 0.632 1.540 sum -5.612 22.992 -10.127 25.743 Atomic orbital electron populations 1.21373 0.88331 1.03117 1.04516 1.21741 0.97993 0.90887 1.04787 1.21990 0.99478 0.90331 0.95449 1.18804 0.96733 0.91320 0.98791 1.22063 0.93192 1.00288 0.96441 1.21454 1.00489 0.90660 0.99165 1.21510 0.94725 1.00845 0.95336 1.20936 0.98814 0.87628 1.00022 1.98375 1.90438 1.36220 1.79624 1.21293 1.00483 0.90800 1.00050 1.18943 0.84769 0.85285 0.78764 1.90744 1.26658 1.85199 1.45929 1.47787 1.30026 1.09176 1.45514 1.22833 0.87429 1.04750 0.94934 1.19397 0.93157 0.81037 0.96567 1.21549 1.19888 1.00579 1.15689 0.95097 1.25846 0.99230 0.97255 0.96302 1.70043 1.44354 1.12841 1.31144 0.85716 0.78717 0.77957 0.80578 1.20321 1.19771 1.16099 0.86287 0.91793 0.89531 0.86501 0.82434 0.81295 0.82891 0.85091 0.90467 0.91287 0.86490 0.92946 0.96447 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 6.13 71.23 0.44 -2.02 16 2 C -0.15 -4.50 5.39 -18.52 -0.10 -4.60 16 3 C -0.05 -1.41 9.37 23.84 0.22 -1.19 16 4 C -0.06 -1.13 5.24 -20.15 -0.11 -1.24 16 5 C -0.10 -1.45 7.96 22.57 0.18 -1.27 16 6 C -0.10 -1.05 10.03 22.22 0.22 -0.83 16 7 C -0.11 -1.35 9.82 22.37 0.22 -1.13 16 8 C -0.05 -0.82 6.31 22.28 0.14 -0.68 16 9 Cl -0.08 -1.30 28.95 -2.72 -0.08 -1.38 16 10 C -0.11 -2.15 9.57 22.60 0.22 -1.93 16 11 C 0.53 22.58 7.27 86.38 0.63 23.21 16 12 O -0.60 -31.76 16.25 -4.36 -0.07 -31.83 16 13 N -0.60 -24.66 2.86 -856.19 -2.45 -27.11 16 14 C 0.04 1.16 9.93 127.77 1.27 2.43 16 15 C 0.22 10.97 4.24 85.63 0.36 11.33 16 16 C -0.54 -32.02 9.94 25.60 0.25 -31.77 16 17 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 18 C 0.01 0.71 5.47 84.65 0.46 1.17 16 19 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 20 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 24 H 0.12 1.49 5.12 -2.38 -0.01 1.48 16 25 H 0.06 1.59 6.83 -2.39 -0.02 1.57 16 26 H 0.09 1.58 7.07 -2.39 -0.02 1.57 16 27 H 0.12 3.49 7.85 -2.91 -0.02 3.47 16 28 H 0.16 1.65 5.16 -2.91 -0.02 1.63 16 29 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 30 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 31 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.07 2.03 8.02 -2.39 -0.02 2.01 16 34 H 0.12 2.58 2.74 -2.39 -0.01 2.57 16 35 H 0.05 2.37 7.13 -2.39 -0.02 2.35 16 36 H 0.02 0.94 6.78 -2.38 -0.02 0.92 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -79.59 322.29 5.04 -74.55 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.04 Total: 7.26 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.41 Total: -8.52 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.15 Total: -86.75 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.07 Total: -31.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -79.59 5.04 -74.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270292937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.903 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds