Wall clock time and date at job start Tue Mar 31 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38332 * 119.83546 * 2 1 4 4 C 1.38087 * 120.13574 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 120.09317 * 180.02562 * 4 3 2 6 6 C 1.39799 * 119.81280 * 359.97438 * 4 3 2 7 7 C 1.47656 * 120.16464 * 180.02562 * 6 4 3 8 8 O 1.21599 * 119.99633 * 325.08082 * 7 6 4 9 9 N 1.34766 * 120.00220 * 145.07848 * 7 6 4 10 10 C 1.36890 * 119.99917 * 6.08702 * 9 7 6 11 11 H 1.08000 * 120.00037 * 314.26548 * 10 9 7 12 12 C 1.39036 * 120.00011 * 134.27078 * 10 9 7 13 13 N 1.31371 * 120.00132 * 339.85846 * 12 10 9 14 14 Si 1.86802 * 120.00053 * 159.86027 * 12 10 9 15 15 H 1.48495 * 109.47137 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47097 * 120.00241 * 14 12 10 17 17 H 1.48501 * 109.47005 * 239.99705 * 14 12 10 18 18 C 1.46500 * 120.00161 * 186.08371 * 9 7 6 19 19 C 1.53000 * 117.49993 * 181.05674 * 18 9 7 20 20 C 1.53000 * 60.00180 * 252.51193 * 19 18 9 21 21 C 1.39651 * 119.67536 * 0.02562 * 6 4 3 22 22 C 1.37929 * 119.86070 * 359.74355 * 21 6 4 23 23 C 1.50697 * 119.90646 * 180.27760 * 22 21 6 24 24 H 1.09002 * 109.46516 * 90.00752 * 1 2 3 25 25 H 1.08996 * 109.46952 * 330.00667 * 1 2 3 26 26 H 1.08997 * 109.46786 * 209.99926 * 1 2 3 27 27 H 1.08003 * 119.93138 * 359.94720 * 3 2 1 28 28 H 0.96997 * 119.99983 * 185.05920 * 13 12 10 29 29 H 1.08999 * 115.54905 * 326.76446 * 18 9 7 30 30 H 1.09009 * 117.50070 * 0.02562 * 19 18 9 31 31 H 1.09001 * 117.50123 * 145.02035 * 19 18 9 32 32 H 1.09002 * 117.49726 * 252.51059 * 20 19 18 33 33 H 1.09001 * 117.49781 * 107.49175 * 20 19 18 34 34 H 1.08003 * 120.06999 * 179.97438 * 21 6 4 35 35 H 1.09010 * 109.46790 * 270.23364 * 23 22 21 36 36 H 1.08994 * 109.47370 * 30.23380 * 23 22 21 37 37 H 1.08997 * 109.47027 * 150.24084 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2000 0.0000 4 6 3.5761 1.2072 0.0005 5 17 4.4387 2.7137 0.0012 6 6 4.2775 -0.0021 0.0016 7 6 5.7541 -0.0034 0.0028 8 8 6.3632 0.8593 -0.6000 9 7 6.4265 -0.9607 0.6718 10 6 5.7465 -2.0011 1.2454 11 1 4.8533 -1.8101 1.8216 12 6 6.2059 -3.3037 1.0863 13 7 7.0224 -3.5964 0.0997 14 14 5.6620 -4.6377 2.2755 15 1 4.7489 -4.0537 3.2906 16 1 4.9532 -5.7077 1.5286 17 1 6.8520 -5.2120 2.9531 18 6 7.8853 -0.8879 0.7852 19 6 8.5928 -2.0178 1.5359 20 6 8.4741 -0.6323 2.1741 21 6 3.5748 -1.2089 0.0016 22 6 2.1955 -1.2005 0.0059 23 6 1.4362 -2.5022 0.0122 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5137 26 1 -0.3633 -0.8900 0.5138 27 1 1.6514 2.1331 -0.0009 28 1 7.2848 -4.5172 -0.0557 29 1 8.4020 -0.4499 -0.0688 30 1 7.9729 -2.8156 1.9452 31 1 9.5752 -2.3235 1.1758 32 1 9.3783 -0.0265 2.2338 33 1 7.7760 -0.5184 3.0035 34 1 4.1102 -2.1469 0.0020 35 1 1.2536 -2.8212 -1.0140 36 1 2.0216 -3.2618 0.5301 37 1 0.4841 -2.3649 0.5248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272682347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:43 Heat of formation + Delta-G solvation = 25.007434 kcal Electronic energy + Delta-G solvation = -21767.710699 eV Core-core repulsion = 18537.370640 eV Total energy + Delta-G solvation = -3230.340060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.63736 -38.18967 -36.20378 -35.76249 -33.39620 -32.47375 -31.82049 -31.22924 -27.42245 -26.18104 -25.18800 -22.40031 -21.79882 -21.23454 -20.09121 -19.12359 -17.32259 -16.39839 -15.48900 -15.25960 -15.00845 -14.60004 -14.20865 -13.79486 -13.72966 -13.09061 -12.94316 -12.81285 -12.59854 -12.50367 -12.19951 -12.03288 -11.80211 -11.61170 -11.28394 -11.02835 -10.83611 -10.76843 -10.50506 -10.42534 -10.40330 -10.21176 -9.72600 -9.31420 -8.75088 -8.44979 -8.21618 -7.94844 -7.32962 -6.47333 -4.19164 1.44967 1.76401 2.76228 2.99763 3.12649 3.15813 3.67728 3.95458 4.30762 4.56344 4.75925 5.04433 5.18338 5.23165 5.34708 5.40352 5.60520 5.64674 5.88449 5.91039 6.00530 6.01306 6.07648 6.10963 6.15883 6.21713 6.36471 6.50661 6.55129 6.64168 6.83496 6.93884 7.01431 7.07885 7.28429 7.32543 7.41838 7.94485 8.27234 8.93132 9.41092 9.86380 10.53245 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.007859 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.245664 B = 3561.909107 C = 5200.586770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.002 4.002 5 Cl -0.061 7.061 6 C -0.090 4.090 7 C 0.520 3.480 8 O -0.578 6.578 9 N -0.407 5.407 10 C -0.356 4.356 11 H 0.091 0.909 12 C 0.057 3.943 13 N -0.838 5.838 14 Si 0.896 3.104 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.275 1.275 18 C 0.111 3.889 19 C -0.145 4.145 20 C -0.219 4.219 21 C -0.052 4.052 22 C -0.109 4.109 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.271 0.729 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 1.509 1.808 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.151 4.151 4 C -0.030 4.030 5 Cl -0.032 7.032 6 C -0.094 4.094 7 C 0.309 3.691 8 O -0.462 6.462 9 N -0.124 5.124 10 C -0.484 4.484 11 H 0.108 0.892 12 C -0.152 4.152 13 N -0.471 5.471 14 Si 0.721 3.279 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.201 1.201 18 C 0.006 3.994 19 C -0.183 4.183 20 C -0.258 4.258 21 C -0.070 4.070 22 C -0.109 4.109 23 C -0.169 4.169 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.663 1.895 1.456 8.987 hybrid contribution -0.061 -0.649 0.607 0.891 sum -8.724 1.246 2.063 9.051 Atomic orbital electron populations 1.20829 0.91307 1.02633 1.02148 1.19690 0.95666 0.92142 1.00023 1.20627 0.91516 0.98110 1.04854 1.20951 0.91830 0.87016 1.03171 1.98351 1.77445 1.30737 1.96618 1.19895 0.95032 0.91780 1.02652 1.18060 0.86168 0.84047 0.80776 1.90669 1.69297 1.40517 1.45692 1.42612 1.03411 1.20652 1.45752 1.19356 1.11731 0.84698 1.32583 0.89187 1.25369 0.95863 0.98259 0.95734 1.70046 1.31746 1.19813 1.25481 0.86372 0.79247 0.81020 0.81255 1.18760 1.20249 1.20054 1.21089 0.82751 1.02438 0.93121 1.23175 1.00238 0.92062 1.02775 1.23373 1.02308 1.01383 0.98722 1.22238 0.92499 0.99829 0.92427 1.19835 0.93995 0.94677 1.02414 1.20806 0.99580 0.94369 1.02104 0.91280 0.91863 0.91074 0.85585 0.91800 0.87719 0.86992 0.90674 0.90345 0.89560 0.81109 0.91426 0.91248 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.60 36.01 0.35 -0.88 16 2 C -0.07 -1.13 5.89 -104.53 -0.62 -1.74 16 3 C -0.13 -2.17 9.46 -39.60 -0.37 -2.55 16 4 C 0.00 -0.04 6.34 -39.05 -0.25 -0.28 16 5 Cl -0.06 -1.20 26.66 -51.86 -1.38 -2.58 16 6 C -0.09 -1.99 5.50 -104.94 -0.58 -2.57 16 7 C 0.52 13.15 7.12 -12.42 -0.09 13.06 16 8 O -0.58 -15.66 14.82 5.28 0.08 -15.58 16 9 N -0.41 -10.18 2.77 -108.86 -0.30 -10.48 16 10 C -0.36 -8.53 5.58 -15.00 -0.08 -8.62 16 11 H 0.09 2.14 6.55 -52.49 -0.34 1.80 16 12 C 0.06 1.32 2.90 -17.45 -0.05 1.27 16 13 N -0.84 -20.66 11.33 55.50 0.63 -20.03 16 14 Si 0.90 17.99 29.17 -169.99 -4.96 13.03 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 C 0.11 2.66 5.61 -67.93 -0.38 2.28 16 19 C -0.14 -3.16 8.16 -26.73 -0.22 -3.38 16 20 C -0.22 -4.54 10.39 -26.73 -0.28 -4.82 16 21 C -0.05 -1.04 7.47 -39.17 -0.29 -1.33 16 22 C -0.11 -1.80 5.87 -104.68 -0.61 -2.42 16 23 C -0.11 -1.48 9.59 36.00 0.35 -1.13 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.07 0.69 5.91 -51.93 -0.31 0.38 16 27 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 28 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 29 H 0.11 2.59 7.78 -51.93 -0.40 2.19 16 30 H 0.11 2.60 4.51 -51.92 -0.23 2.37 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.17 3.71 5.50 -52.48 -0.29 3.42 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.07 0.71 5.92 -51.93 -0.31 0.40 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -27.68 314.99 -8.72 -36.39 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.40 Total: 7.61 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -3.13 Total: -13.12 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.33 Total: -30.51 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.96 Total: 13.03 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.38 Total: -2.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.68 -8.72 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272682347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.400 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds