Wall clock time and date at job start Tue Mar 31 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38332 * 119.83546 * 2 1 4 4 C 1.38087 * 120.13574 * 179.97438 * 3 2 1 5 5 Cl 1.73598 * 120.09317 * 180.02562 * 4 3 2 6 6 C 1.39799 * 119.81280 * 359.97438 * 4 3 2 7 7 C 1.47656 * 120.16464 * 180.02562 * 6 4 3 8 8 O 1.21599 * 119.99633 * 325.08082 * 7 6 4 9 9 N 1.34766 * 120.00220 * 145.07848 * 7 6 4 10 10 C 1.36890 * 119.99917 * 6.08702 * 9 7 6 11 11 H 1.08000 * 120.00037 * 314.26548 * 10 9 7 12 12 C 1.39036 * 120.00011 * 134.27078 * 10 9 7 13 13 N 1.31371 * 120.00132 * 339.85846 * 12 10 9 14 14 Si 1.86802 * 120.00053 * 159.86027 * 12 10 9 15 15 H 1.48495 * 109.47137 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47097 * 120.00241 * 14 12 10 17 17 H 1.48501 * 109.47005 * 239.99705 * 14 12 10 18 18 C 1.46500 * 120.00161 * 186.08371 * 9 7 6 19 19 C 1.53000 * 117.49993 * 181.05674 * 18 9 7 20 20 C 1.53000 * 60.00180 * 252.51193 * 19 18 9 21 21 C 1.39651 * 119.67536 * 0.02562 * 6 4 3 22 22 C 1.37929 * 119.86070 * 359.74355 * 21 6 4 23 23 C 1.50697 * 119.90646 * 180.27760 * 22 21 6 24 24 H 1.09002 * 109.46516 * 90.00752 * 1 2 3 25 25 H 1.08996 * 109.46952 * 330.00667 * 1 2 3 26 26 H 1.08997 * 109.46786 * 209.99926 * 1 2 3 27 27 H 1.08003 * 119.93138 * 359.94720 * 3 2 1 28 28 H 0.96997 * 119.99983 * 185.05920 * 13 12 10 29 29 H 1.08999 * 115.54905 * 326.76446 * 18 9 7 30 30 H 1.09009 * 117.50070 * 0.02562 * 19 18 9 31 31 H 1.09001 * 117.50123 * 145.02035 * 19 18 9 32 32 H 1.09002 * 117.49726 * 252.51059 * 20 19 18 33 33 H 1.09001 * 117.49781 * 107.49175 * 20 19 18 34 34 H 1.08003 * 120.06999 * 179.97438 * 21 6 4 35 35 H 1.09010 * 109.46790 * 270.23364 * 23 22 21 36 36 H 1.08994 * 109.47370 * 30.23380 * 23 22 21 37 37 H 1.08997 * 109.47027 * 150.24084 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2000 0.0000 4 6 3.5761 1.2072 0.0005 5 17 4.4387 2.7137 0.0012 6 6 4.2775 -0.0021 0.0016 7 6 5.7541 -0.0034 0.0028 8 8 6.3632 0.8593 -0.6000 9 7 6.4265 -0.9607 0.6718 10 6 5.7465 -2.0011 1.2454 11 1 4.8533 -1.8101 1.8216 12 6 6.2059 -3.3037 1.0863 13 7 7.0224 -3.5964 0.0997 14 14 5.6620 -4.6377 2.2755 15 1 4.7489 -4.0537 3.2906 16 1 4.9532 -5.7077 1.5286 17 1 6.8520 -5.2120 2.9531 18 6 7.8853 -0.8879 0.7852 19 6 8.5928 -2.0178 1.5359 20 6 8.4741 -0.6323 2.1741 21 6 3.5748 -1.2089 0.0016 22 6 2.1955 -1.2005 0.0059 23 6 1.4362 -2.5022 0.0122 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5137 26 1 -0.3633 -0.8900 0.5138 27 1 1.6514 2.1331 -0.0009 28 1 7.2848 -4.5172 -0.0557 29 1 8.4020 -0.4499 -0.0688 30 1 7.9729 -2.8156 1.9452 31 1 9.5752 -2.3235 1.1758 32 1 9.3783 -0.0265 2.2338 33 1 7.7760 -0.5184 3.0035 34 1 4.1102 -2.1469 0.0020 35 1 1.2536 -2.8212 -1.0140 36 1 2.0216 -3.2618 0.5301 37 1 0.4841 -2.3649 0.5248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272682347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:43 Heat of formation + Delta-G solvation = 11.400538 kcal Electronic energy + Delta-G solvation = -21768.300739 eV Core-core repulsion = 18537.370640 eV Total energy + Delta-G solvation = -3230.930099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23238 -39.79107 -37.96532 -37.32927 -35.14070 -33.93139 -33.38771 -32.73588 -28.62407 -27.51808 -26.96327 -23.98740 -23.21298 -22.93182 -21.73585 -20.84346 -19.05190 -18.10527 -17.09382 -16.72949 -16.60679 -16.25632 -15.73494 -15.35101 -15.09314 -14.65521 -14.42646 -14.36791 -13.97133 -13.67724 -13.56193 -13.46969 -13.28930 -13.02718 -12.81008 -12.64170 -12.24836 -12.09549 -12.04708 -12.03882 -11.86218 -11.75146 -11.47719 -11.11481 -10.58036 -10.27109 -9.65245 -9.37695 -9.15895 -8.28009 -6.06123 0.00179 0.36150 1.27913 1.39347 1.47502 1.57893 2.03199 2.26276 2.70143 2.82807 3.00900 3.39810 3.87359 4.00653 4.05010 4.19285 4.26058 4.29893 4.36674 4.46678 4.58462 4.78298 4.82188 4.83380 4.86702 5.00154 5.02364 5.07420 5.23547 5.24973 5.31003 5.35364 5.45385 5.51748 5.55471 5.70701 6.02429 6.09507 6.42158 7.08824 7.53689 8.00914 8.74302 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.007859 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.245664 B = 3561.909107 C = 5200.586770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.019 4.019 5 Cl -0.071 7.071 6 C -0.127 4.127 7 C 0.503 3.497 8 O -0.614 6.614 9 N -0.415 5.415 10 C -0.362 4.362 11 H 0.088 0.912 12 C 0.030 3.970 13 N -0.871 5.871 14 Si 0.958 3.042 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.275 1.275 18 C 0.075 3.925 19 C -0.134 4.134 20 C -0.192 4.192 21 C -0.066 4.066 22 C -0.107 4.107 23 C -0.111 4.111 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.274 0.726 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 0.776 2.923 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.047 4.047 5 Cl -0.042 7.042 6 C -0.131 4.131 7 C 0.293 3.707 8 O -0.501 6.501 9 N -0.131 5.131 10 C -0.489 4.489 11 H 0.105 0.895 12 C -0.176 4.176 13 N -0.505 5.505 14 Si 0.780 3.220 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.200 1.200 18 C -0.030 4.030 19 C -0.172 4.172 20 C -0.231 4.231 21 C -0.085 4.085 22 C -0.107 4.107 23 C -0.167 4.167 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.174 0.826 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.569 1.152 2.585 11.910 hybrid contribution 0.771 -0.399 0.205 0.892 sum -10.798 0.753 2.791 11.178 Atomic orbital electron populations 1.20964 0.87314 1.04558 1.03874 1.20237 0.98272 0.90778 0.96780 1.21032 0.90035 1.00153 1.03285 1.21178 0.93135 0.85987 1.04363 1.98335 1.78078 1.31003 1.96744 1.19816 0.93377 0.93662 1.06238 1.18721 0.87857 0.83756 0.80333 1.90605 1.70465 1.41793 1.47216 1.42835 1.03853 1.20900 1.45521 1.19433 1.11972 0.84943 1.32555 0.89470 1.25973 0.95567 0.99601 0.96504 1.70145 1.32989 1.20386 1.26963 0.85434 0.78844 0.78437 0.79248 1.18239 1.19532 1.20015 1.21175 0.82783 1.04868 0.94214 1.23095 1.00185 0.91859 1.02041 1.23385 1.02604 1.00749 0.96372 1.22027 0.94229 0.98082 0.94167 1.20209 0.92639 0.97119 1.00756 1.20902 1.00320 0.92144 1.03372 0.89382 0.89965 0.89234 0.82590 0.91606 0.89848 0.88145 0.89337 0.87601 0.89773 0.83486 0.90007 0.92025 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.60 71.24 0.68 -1.13 16 2 C -0.06 -1.62 5.89 -19.80 -0.12 -1.74 16 3 C -0.13 -3.89 9.46 22.26 0.21 -3.68 16 4 C -0.02 -0.76 6.34 22.61 0.14 -0.61 16 5 Cl -0.07 -2.85 26.66 -2.72 -0.07 -2.92 16 6 C -0.13 -5.84 5.50 -20.07 -0.11 -5.95 16 7 C 0.50 26.78 7.12 86.73 0.62 27.40 16 8 O -0.61 -35.27 14.82 -4.03 -0.06 -35.33 16 9 N -0.41 -21.67 2.77 -616.58 -1.71 -23.38 16 10 C -0.36 -17.84 5.58 84.10 0.47 -17.37 16 11 H 0.09 4.27 6.55 -2.91 -0.02 4.25 16 12 C 0.03 1.40 2.90 84.95 0.25 1.64 16 13 N -0.87 -43.90 11.33 21.68 0.25 -43.66 16 14 Si 0.96 36.72 29.17 68.60 2.00 38.72 16 15 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 18 C 0.07 3.71 5.61 44.99 0.25 3.96 16 19 C -0.13 -5.91 8.16 30.59 0.25 -5.66 16 20 C -0.19 -7.98 10.39 30.60 0.32 -7.66 16 21 C -0.07 -2.72 7.47 22.54 0.17 -2.55 16 22 C -0.11 -3.33 5.87 -19.90 -0.12 -3.45 16 23 C -0.11 -2.57 9.59 71.23 0.68 -1.89 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 26 H 0.09 1.19 5.91 -2.39 -0.01 1.18 16 27 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 29 H 0.08 4.40 7.78 -2.39 -0.02 4.38 16 30 H 0.10 4.68 4.51 -2.38 -0.01 4.67 16 31 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.15 6.65 5.50 -2.91 -0.02 6.63 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 37 H 0.10 1.63 5.92 -2.39 -0.01 1.62 16 Total: -1.00 -63.47 314.99 5.20 -58.27 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.10 Total: 26.99 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.70 Total: -18.68 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.46 Total: -67.04 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.06 Total: -35.33 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.00 Total: 38.72 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.92 kcal Total: -63.47 5.20 -58.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272682347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.666 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds