Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29886 * 125.72983 * 2 1 4 4 N 1.39776 * 109.43241 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.94929 * 180.02562 * 4 3 2 6 6 C 1.36728 * 108.10106 * 359.97438 * 4 3 2 7 7 S 1.75884 * 142.80822 * 180.02562 * 6 4 3 8 8 C 1.75572 * 91.47407 * 179.97438 * 7 6 4 9 9 C 1.46591 * 124.79127 * 179.97438 * 8 7 6 10 10 O 1.21703 * 120.00360 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99446 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72449 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 C 1.34121 * 110.42705 * 0.24620 * 8 7 6 23 23 C 1.38538 * 107.41445 * 0.02562 * 6 4 3 24 24 H 1.08998 * 109.47316 * 269.99757 * 1 2 3 25 25 H 1.08998 * 109.47159 * 30.00326 * 1 2 3 26 26 H 1.09001 * 109.46803 * 150.00048 * 1 2 3 27 27 H 1.09003 * 109.47119 * 269.97064 * 5 4 3 28 28 H 1.08996 * 109.47612 * 29.97086 * 5 4 3 29 29 H 1.09005 * 109.47071 * 149.97377 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 36 36 H 1.08003 * 122.34834 * 179.75655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0544 0.0000 4 7 3.6071 0.6621 0.0006 5 6 4.7654 1.5591 0.0013 6 6 3.6501 -0.7045 0.0015 7 16 4.7569 -2.0714 0.0032 8 6 3.4212 -3.2110 0.0039 9 6 3.5662 -4.6697 0.0048 10 8 2.5777 -5.3796 0.0047 11 7 4.7944 -5.2247 0.0057 12 6 4.9394 -6.6824 0.0127 13 6 6.4254 -7.0471 0.0193 14 6 6.5745 -8.5467 0.0259 15 1 5.6972 -9.1766 0.0258 16 6 7.8310 -9.1145 0.0320 17 7 8.8993 -8.3474 0.0326 18 14 8.0159 -10.9734 0.0409 19 1 7.3717 -11.5406 -1.1709 20 1 9.4581 -11.3272 0.0472 21 1 7.3649 -11.5298 1.2541 22 6 2.2493 -2.5586 -0.0026 23 6 2.3419 -1.1605 0.0010 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 5.0535 1.7813 -1.0262 28 1 4.5074 2.4854 0.5147 29 1 5.5972 1.0780 0.5159 30 1 5.5824 -4.6589 0.0061 31 1 4.4611 -7.0909 0.9030 32 1 4.4671 -7.0989 -0.8770 33 1 6.9036 -6.6387 -0.8709 34 1 6.8978 -6.6308 0.9091 35 1 9.7832 -8.7469 0.0365 36 1 1.3006 -3.0748 -0.0072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273034815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = 51.122649 kcal Electronic energy + Delta-G solvation = -19787.398511 eV Core-core repulsion = 16592.527349 eV Total energy + Delta-G solvation = -3194.871162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57617 -39.28266 -35.89647 -34.84814 -34.01075 -32.87832 -30.26113 -29.87390 -28.86085 -26.15883 -24.88621 -23.45644 -22.15533 -20.93391 -20.15876 -19.53700 -18.06963 -16.64705 -16.24705 -16.13575 -15.69556 -15.46204 -14.98160 -14.50588 -14.46057 -13.95142 -13.71234 -13.44469 -13.33952 -13.30227 -12.78779 -12.70230 -12.29911 -12.14882 -11.59967 -11.25030 -11.18075 -11.14937 -11.02668 -10.66890 -10.35667 -10.01226 -9.94880 -9.55690 -9.27781 -8.74163 -8.54291 -8.38001 -8.00696 -6.10115 -4.13167 0.65243 0.68328 1.42981 1.64773 2.18364 2.59824 3.31121 3.34855 3.37317 3.46731 3.53838 4.03045 4.39762 4.47771 4.48479 4.75752 4.82326 5.01220 5.04398 5.26942 5.28536 5.31212 5.46823 5.55492 5.88143 5.93920 6.18423 6.31828 6.32528 6.38497 6.69582 6.80844 7.23500 7.49021 7.59243 7.86692 7.89689 8.25230 8.50545 8.92358 9.51689 11.01477 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.002907 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.768706 B = 9631.253929 C =10451.950579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.131 3.869 3 N -0.268 5.268 4 N -0.356 5.356 5 C 0.104 3.896 6 C 0.022 3.978 7 S 0.198 5.802 8 C -0.255 4.255 9 C 0.584 3.416 10 O -0.537 6.537 11 N -0.716 5.716 12 C 0.122 3.878 13 C 0.012 3.988 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.012 3.988 23 C -0.224 4.224 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.394 0.606 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 21.194 -0.001 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.043 4.043 3 N -0.086 5.086 4 N -0.142 5.142 5 C -0.037 4.037 6 C -0.216 4.216 7 S 0.451 5.549 8 C -0.375 4.375 9 C 0.369 3.631 10 O -0.417 6.417 11 N -0.365 5.365 12 C 0.000 4.000 13 C -0.026 4.026 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.021 4.021 23 C -0.240 4.240 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.228 0.772 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.034 21.894 -0.002 23.685 hybrid contribution -0.622 -1.269 0.004 1.413 sum -9.656 20.625 0.001 22.774 Atomic orbital electron populations 1.20302 0.85539 1.04008 1.03680 1.22373 0.96836 0.87925 0.97175 1.76703 0.85809 1.22669 1.23405 1.47808 1.05044 1.00736 1.60637 1.21957 0.83961 0.94034 1.03766 1.24703 1.00473 0.90320 1.06121 1.84084 1.03758 0.89389 1.77710 1.23642 0.96352 0.97480 1.20029 1.16901 0.84227 0.84802 0.77155 1.90808 1.37802 1.61838 1.51220 1.46236 1.06535 1.10155 1.73593 1.21809 1.01285 0.75720 1.01180 1.19337 0.87949 0.97329 0.97940 1.21001 0.92480 0.91070 1.51556 0.92209 1.24993 0.95842 0.98462 0.94942 1.69942 0.97917 1.35199 1.50239 0.86563 0.76941 0.85180 0.78803 1.20085 1.21250 1.20091 1.19466 0.98894 0.90387 0.93333 1.18919 0.91310 0.94227 1.19532 0.89760 0.90313 0.89689 0.90392 0.88709 0.89350 0.77239 0.92141 0.92129 0.95859 0.95866 0.92764 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 36.00 0.38 -0.19 16 2 C 0.13 1.48 7.28 -81.59 -0.59 0.89 16 3 N -0.27 -3.23 12.44 34.15 0.42 -2.80 16 4 N -0.36 -3.98 4.05 -66.02 -0.27 -4.25 16 5 C 0.10 0.69 11.48 59.85 0.69 1.38 16 6 C 0.02 0.28 8.01 -15.26 -0.12 0.15 16 7 S 0.20 2.35 22.27 -107.50 -2.39 -0.04 16 8 C -0.26 -3.73 6.33 -37.66 -0.24 -3.97 16 9 C 0.58 10.45 7.78 -12.89 -0.10 10.35 16 10 O -0.54 -11.22 16.74 5.19 0.09 -11.13 16 11 N -0.72 -12.96 5.55 -61.64 -0.34 -13.30 16 12 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.01 0.16 9.84 -40.32 -0.40 -0.23 16 23 C -0.22 -2.85 6.55 -107.25 -0.70 -3.55 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.39 6.35 7.52 -40.82 -0.31 6.04 16 31 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.16 1.92 7.97 -52.48 -0.42 1.50 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -33.37 331.15 -7.95 -41.32 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.49 Total: -0.22 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.67 Total: -5.59 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.55 Total: -45.57 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.39 Total: -0.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.37 -7.95 -41.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273034815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.443 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds