Wall clock time and date at job start Tue Mar 31 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29886 * 125.72983 * 2 1 4 4 N 1.39776 * 109.43241 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.94929 * 180.02562 * 4 3 2 6 6 C 1.36728 * 108.10106 * 359.97438 * 4 3 2 7 7 S 1.75884 * 142.80822 * 180.02562 * 6 4 3 8 8 C 1.75572 * 91.47407 * 179.97438 * 7 6 4 9 9 C 1.46591 * 124.79127 * 179.97438 * 8 7 6 10 10 O 1.21703 * 120.00360 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99446 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72449 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47037 * 59.99882 * 18 16 14 20 20 H 1.48501 * 109.46667 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47133 * 299.99829 * 18 16 14 22 22 C 1.34121 * 110.42705 * 0.24620 * 8 7 6 23 23 C 1.38538 * 107.41445 * 0.02562 * 6 4 3 24 24 H 1.08998 * 109.47316 * 269.99757 * 1 2 3 25 25 H 1.08998 * 109.47159 * 30.00326 * 1 2 3 26 26 H 1.09001 * 109.46803 * 150.00048 * 1 2 3 27 27 H 1.09003 * 109.47119 * 269.97064 * 5 4 3 28 28 H 1.08996 * 109.47612 * 29.97086 * 5 4 3 29 29 H 1.09005 * 109.47071 * 149.97377 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 34 34 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 35 35 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 36 36 H 1.08003 * 122.34834 * 179.75655 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0544 0.0000 4 7 3.6071 0.6621 0.0006 5 6 4.7654 1.5591 0.0013 6 6 3.6501 -0.7045 0.0015 7 16 4.7569 -2.0714 0.0032 8 6 3.4212 -3.2110 0.0039 9 6 3.5662 -4.6697 0.0048 10 8 2.5777 -5.3796 0.0047 11 7 4.7944 -5.2247 0.0057 12 6 4.9394 -6.6824 0.0127 13 6 6.4254 -7.0471 0.0193 14 6 6.5745 -8.5467 0.0259 15 1 5.6972 -9.1766 0.0258 16 6 7.8310 -9.1145 0.0320 17 7 8.8993 -8.3474 0.0326 18 14 8.0159 -10.9734 0.0409 19 1 7.3717 -11.5406 -1.1709 20 1 9.4581 -11.3272 0.0472 21 1 7.3649 -11.5298 1.2541 22 6 2.2493 -2.5586 -0.0026 23 6 2.3419 -1.1605 0.0010 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 5.0535 1.7813 -1.0262 28 1 4.5074 2.4854 0.5147 29 1 5.5972 1.0780 0.5159 30 1 5.5824 -4.6589 0.0061 31 1 4.4611 -7.0909 0.9030 32 1 4.4671 -7.0989 -0.8770 33 1 6.9036 -6.6387 -0.8709 34 1 6.8978 -6.6308 0.9091 35 1 9.7832 -8.7469 0.0365 36 1 1.3006 -3.0748 -0.0072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273034815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:53 Heat of formation + Delta-G solvation = 29.084197 kcal Electronic energy + Delta-G solvation = -19788.354170 eV Core-core repulsion = 16592.527349 eV Total energy + Delta-G solvation = -3195.826821 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.46462 -40.73264 -37.04317 -36.43723 -34.85004 -34.78377 -31.90829 -30.60263 -30.03200 -27.34029 -26.34313 -24.56200 -23.44835 -22.60901 -21.17098 -20.76652 -19.04784 -18.48377 -17.63837 -16.97702 -16.91511 -16.60701 -16.50271 -16.42487 -15.55763 -14.98491 -14.96851 -14.49549 -14.39925 -14.26205 -14.04289 -13.61793 -13.25106 -13.24128 -13.05916 -12.93145 -12.54804 -12.49930 -12.23153 -12.13801 -12.06738 -11.68260 -11.49334 -11.10424 -10.87625 -10.59643 -10.16862 -9.59791 -8.92938 -8.22944 -6.33467 -0.41285 -0.26784 0.52376 0.62774 1.43339 1.44366 1.45625 1.53466 1.56649 2.10059 2.17931 2.44250 3.11952 3.27347 3.47124 3.71299 3.84505 4.23950 4.30467 4.36391 4.44509 4.48630 4.56802 4.78700 4.80577 4.83831 4.85120 4.96741 5.01309 5.18146 5.39395 5.45974 5.57253 5.61225 5.78167 6.15596 6.37779 6.44721 6.79170 7.06789 7.35767 8.88826 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.002907 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.768706 B = 9631.253929 C =10451.950579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.131 3.869 3 N -0.285 5.285 4 N -0.355 5.355 5 C 0.091 3.909 6 C 0.018 3.982 7 S 0.233 5.767 8 C -0.289 4.289 9 C 0.588 3.412 10 O -0.573 6.573 11 N -0.714 5.714 12 C 0.140 3.860 13 C 0.022 3.978 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.029 3.971 23 C -0.246 4.246 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.404 0.596 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 22.127 0.013 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 N -0.103 5.103 4 N -0.142 5.142 5 C -0.048 4.048 6 C -0.222 4.222 7 S 0.486 5.514 8 C -0.408 4.408 9 C 0.376 3.624 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.017 3.983 13 C -0.016 4.016 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.004 4.004 23 C -0.262 4.262 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.239 0.761 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.402 22.875 0.011 24.732 hybrid contribution -0.516 -1.392 -0.002 1.484 sum -9.918 21.483 0.009 23.662 Atomic orbital electron populations 1.20476 0.83067 1.05133 1.04891 1.22944 0.98441 0.87035 0.95840 1.76700 0.86352 1.23104 1.24136 1.48267 1.05774 1.00673 1.59442 1.22355 0.83090 0.94157 1.05238 1.24909 1.00632 0.91176 1.05483 1.83871 1.01846 0.88150 1.77523 1.23275 0.98253 0.96070 1.23223 1.17205 0.83259 0.86102 0.75846 1.90777 1.38679 1.63197 1.52824 1.46029 1.07435 1.08920 1.73985 1.21346 0.98690 0.77717 1.00523 1.19151 0.89831 0.96151 0.96455 1.21430 0.92851 0.92597 1.51672 0.92065 1.25867 0.95488 1.03381 0.94387 1.70049 0.98407 1.37223 1.50913 0.85500 0.77125 0.79285 0.79151 1.19311 1.20659 1.19325 1.19574 0.98781 0.90832 0.91246 1.19087 0.92093 0.94193 1.20818 0.88373 0.89070 0.88687 0.88918 0.87224 0.87847 0.76081 0.92809 0.92797 0.97244 0.97246 0.92523 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.46 71.24 0.74 -0.23 16 2 C 0.13 2.76 7.28 44.03 0.32 3.08 16 3 N -0.28 -6.35 12.44 -45.86 -0.57 -6.92 16 4 N -0.36 -7.28 4.05 -362.79 -1.47 -8.75 16 5 C 0.09 1.00 11.48 127.77 1.47 2.47 16 6 C 0.02 0.43 8.01 84.00 0.67 1.10 16 7 S 0.23 5.31 22.27 -56.49 -1.26 4.05 16 8 C -0.29 -8.33 6.33 23.51 0.15 -8.18 16 9 C 0.59 21.20 7.78 86.42 0.67 21.87 16 10 O -0.57 -24.25 16.74 -4.36 -0.07 -24.33 16 11 N -0.71 -26.10 5.55 -467.15 -2.59 -28.70 16 12 C 0.14 6.07 5.61 86.38 0.48 6.56 16 13 C 0.02 1.09 5.09 29.85 0.15 1.24 16 14 C -0.55 -30.40 9.11 25.60 0.23 -30.17 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.01 0.43 5.46 84.65 0.46 0.89 16 17 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 18 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.03 0.76 9.84 21.79 0.21 0.98 16 23 C -0.25 -5.96 6.55 -21.57 -0.14 -6.10 16 24 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.40 13.07 7.52 -92.71 -0.70 12.37 16 31 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.16 3.87 7.97 -2.91 -0.02 3.85 16 Total: -1.00 -70.92 331.15 2.19 -68.73 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.41 Total: 10.82 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.43 Total: -6.50 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.35 Total: -98.16 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.26 Total: 4.05 kcal Total: -70.92 2.19 -68.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273034815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.818 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds