Wall clock time and date at job start Tue Mar 31 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34813 * 119.99818 * 2 1 4 4 C 1.46427 * 119.99945 * 5.61509 * 3 2 1 5 5 O 1.21695 * 120.00125 * 354.73765 * 4 3 2 6 6 N 1.34777 * 119.99914 * 174.74559 * 4 3 2 7 7 C 1.46494 * 120.00304 * 179.72125 * 6 4 3 8 8 C 1.53000 * 109.47575 * 180.27272 * 7 6 4 9 9 C 1.50697 * 109.47092 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00271 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99527 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46966 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47412 * 120.00025 * 13 11 9 16 16 H 1.48495 * 109.47270 * 240.00067 * 13 11 9 17 17 C 1.47214 * 120.00133 * 180.02562 * 2 1 3 18 18 C 1.39857 * 120.15802 * 114.72351 * 17 2 1 19 19 C 1.37883 * 119.84480 * 179.70014 * 18 17 2 20 20 C 1.38401 * 120.18374 * 0.59886 * 19 18 17 21 21 C 1.38492 * 120.33619 * 359.67649 * 20 19 18 22 22 Cl 1.73601 * 119.92971 * 180.02562 * 21 20 19 23 23 C 1.38031 * 120.13851 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47248 * 58.16822 * 1 2 3 25 25 H 1.09001 * 109.47106 * 178.16731 * 1 2 3 26 26 H 1.09001 * 109.46833 * 298.16590 * 1 2 3 27 27 H 1.07998 * 119.99528 * 185.61428 * 3 2 1 28 28 H 0.97002 * 120.00003 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.47022 * 300.27765 * 7 6 4 30 30 H 1.09004 * 109.47150 * 60.27109 * 7 6 4 31 31 H 1.09000 * 109.46933 * 300.00634 * 8 7 6 32 32 H 1.08998 * 109.46764 * 60.00128 * 8 7 6 33 33 H 0.97001 * 120.00347 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.07950 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.90590 * 180.29754 * 19 18 17 36 36 H 1.08004 * 119.82787 * 179.69864 * 20 19 18 37 37 H 1.08006 * 120.09053 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4541 2.4326 0.1241 5 8 0.2372 2.4370 0.1308 6 7 2.1328 3.5921 0.2307 7 6 1.4056 4.8583 0.3487 8 6 2.4046 6.0130 0.4476 9 6 1.6564 7.3155 0.5684 10 1 0.5765 7.3194 0.5744 11 6 2.3508 8.5022 0.6722 12 7 3.6658 8.4974 0.6653 13 14 1.4235 10.1168 0.8226 14 1 -0.0376 9.8518 0.8064 15 1 1.7913 10.7820 2.0983 16 1 1.7795 11.0001 -0.3168 17 6 2.2431 -1.2749 -0.0006 18 6 3.0325 -1.6300 -1.0991 19 6 3.7241 -2.8228 -1.0902 20 6 3.6292 -3.6741 -0.0031 21 6 2.8452 -3.3326 1.0863 22 17 2.7343 -4.4080 2.4446 23 6 2.1519 -2.1391 1.0944 24 1 -0.3634 0.5420 -0.8731 25 1 -0.3633 -1.0271 -0.0329 26 1 -0.3633 0.4851 0.9060 27 1 3.2572 1.1697 -0.0915 28 1 3.1028 3.5886 0.2256 29 1 0.7745 4.9980 -0.5290 30 1 0.7838 4.8382 1.2437 31 1 3.0357 5.8732 1.3253 32 1 3.0263 6.0331 -0.4474 33 1 4.1543 9.3323 0.7388 34 1 3.1043 -0.9691 -1.9503 35 1 4.3377 -3.0958 -1.9360 36 1 4.1696 -4.6092 -0.0043 37 1 1.5411 -1.8734 1.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273069920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:41 Heat of formation + Delta-G solvation = -21.772082 kcal Electronic energy + Delta-G solvation = -19434.220493 eV Core-core repulsion = 16201.851921 eV Total energy + Delta-G solvation = -3232.368572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93724 -39.13623 -36.88734 -35.38107 -34.44492 -32.85456 -31.21834 -30.43337 -29.75928 -27.61017 -24.92452 -23.72582 -22.91055 -21.33236 -20.62581 -19.08203 -17.22503 -16.80735 -16.20921 -15.91439 -15.71471 -14.98050 -14.86566 -14.48669 -14.33081 -14.10414 -13.89118 -13.38002 -13.12963 -12.81613 -12.53325 -12.29448 -11.94614 -11.90940 -11.76713 -11.66583 -11.21811 -11.19623 -11.05627 -10.62974 -10.33700 -9.74459 -9.60739 -9.42699 -9.20532 -9.15096 -8.89641 -8.51075 -8.30691 -6.10315 -4.13069 0.60241 0.82329 1.35994 1.78396 3.19417 3.27709 3.35294 3.40148 3.54340 3.72962 4.32366 4.43508 4.44149 4.66853 4.76735 4.92903 4.98468 5.20385 5.26855 5.33333 5.41386 5.56634 5.75008 5.82916 5.89684 5.94261 6.06871 6.25844 6.32191 6.34553 6.38267 6.50761 6.73665 6.93319 7.51562 7.61041 7.88157 8.03752 8.27213 8.65853 8.93321 9.51865 11.01355 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.002280 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.587529 B =12278.382955 C =12342.856876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.013 4.013 3 C -0.196 4.196 4 C 0.534 3.466 5 O -0.549 6.549 6 N -0.717 5.717 7 C 0.122 3.878 8 C 0.012 3.988 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.040 4.040 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.033 4.033 22 Cl -0.070 7.070 23 C -0.094 4.094 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.398 0.602 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -26.089 -1.991 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.015 4.015 3 C -0.217 4.217 4 C 0.322 3.678 5 O -0.430 6.430 6 N -0.366 5.366 7 C 0.000 4.000 8 C -0.026 4.026 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.040 4.040 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.130 4.130 21 C -0.059 4.059 22 Cl -0.041 7.041 23 C -0.113 4.113 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.145 0.855 28 H 0.232 0.768 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.546 -26.014 -1.844 26.085 hybrid contribution 0.309 0.881 0.227 0.961 sum 0.856 -25.133 -1.617 25.200 Atomic orbital electron populations 1.20971 0.89515 1.00973 1.04850 1.20982 0.96386 0.90512 0.93624 1.22902 1.00233 0.92119 1.06429 1.18252 0.87501 0.84282 0.77719 1.90776 1.13574 1.87525 1.51097 1.46243 1.10500 1.07096 1.72753 1.21715 0.96115 0.81571 1.00607 1.19331 0.94184 0.91267 0.97800 1.21092 0.93283 0.90868 1.50703 0.92190 1.25004 0.94891 0.99411 0.95043 1.69961 1.05968 1.27085 1.50298 0.86459 0.80143 0.83312 0.77671 1.19578 1.20931 1.20929 1.18894 0.97104 0.93899 0.94102 1.21502 0.95556 0.96925 0.97846 1.21073 0.99271 0.93900 0.98075 1.21161 0.98676 1.00663 0.92500 1.20804 1.01455 0.93053 0.90635 1.98382 1.97366 1.64229 1.44145 1.21157 0.99312 0.91974 0.98840 0.89542 0.93091 0.89481 0.85530 0.76848 0.92526 0.92548 0.95941 0.95947 0.92892 0.84833 0.84708 0.84890 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.33 36.01 0.30 -0.99 16 2 C -0.01 -0.15 5.48 -102.19 -0.56 -0.71 16 3 C -0.20 -2.48 9.64 -37.50 -0.36 -2.84 16 4 C 0.53 8.89 7.71 -12.96 -0.10 8.79 16 5 O -0.55 -10.64 13.15 5.19 0.07 -10.57 16 6 N -0.72 -12.46 5.55 -61.70 -0.34 -12.80 16 7 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 8 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 9 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 10 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 13 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 C -0.04 -0.39 5.23 -105.07 -0.55 -0.94 16 18 C -0.10 -0.84 9.73 -39.11 -0.38 -1.22 16 19 C -0.11 -0.74 10.03 -39.65 -0.40 -1.14 16 20 C -0.11 -0.84 9.82 -39.43 -0.39 -1.23 16 21 C -0.03 -0.29 6.31 -39.56 -0.25 -0.54 16 22 Cl -0.07 -0.60 28.95 -51.86 -1.50 -2.10 16 23 C -0.09 -0.90 9.56 -39.08 -0.37 -1.27 16 24 H 0.09 1.15 7.33 -51.93 -0.38 0.77 16 25 H 0.05 0.51 7.99 -51.93 -0.41 0.09 16 26 H 0.09 1.18 7.17 -51.93 -0.37 0.81 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.40 6.01 8.45 -40.82 -0.35 5.66 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -30.90 338.76 -9.45 -40.35 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.86 Total: 1.65 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.64 Total: -12.58 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.39 Total: -38.18 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.90 -9.45 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273069920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.580 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds