Wall clock time and date at job start Tue Mar 31 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34813 * 119.99818 * 2 1 4 4 C 1.46427 * 119.99945 * 5.61509 * 3 2 1 5 5 O 1.21695 * 120.00125 * 354.73765 * 4 3 2 6 6 N 1.34777 * 119.99914 * 174.74559 * 4 3 2 7 7 C 1.46494 * 120.00304 * 179.72125 * 6 4 3 8 8 C 1.53000 * 109.47575 * 180.27272 * 7 6 4 9 9 C 1.50697 * 109.47092 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00271 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99527 * 179.97438 * 9 8 7 12 12 N 1.31507 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46966 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47412 * 120.00025 * 13 11 9 16 16 H 1.48495 * 109.47270 * 240.00067 * 13 11 9 17 17 C 1.47214 * 120.00133 * 180.02562 * 2 1 3 18 18 C 1.39857 * 120.15802 * 114.72351 * 17 2 1 19 19 C 1.37883 * 119.84480 * 179.70014 * 18 17 2 20 20 C 1.38401 * 120.18374 * 0.59886 * 19 18 17 21 21 C 1.38492 * 120.33619 * 359.67649 * 20 19 18 22 22 Cl 1.73601 * 119.92971 * 180.02562 * 21 20 19 23 23 C 1.38031 * 120.13851 * 0.02562 * 21 20 19 24 24 H 1.08999 * 109.47248 * 58.16822 * 1 2 3 25 25 H 1.09001 * 109.47106 * 178.16731 * 1 2 3 26 26 H 1.09001 * 109.46833 * 298.16590 * 1 2 3 27 27 H 1.07998 * 119.99528 * 185.61428 * 3 2 1 28 28 H 0.97002 * 120.00003 * 359.97438 * 6 4 3 29 29 H 1.09001 * 109.47022 * 300.27765 * 7 6 4 30 30 H 1.09004 * 109.47150 * 60.27109 * 7 6 4 31 31 H 1.09000 * 109.46933 * 300.00634 * 8 7 6 32 32 H 1.08998 * 109.46764 * 60.00128 * 8 7 6 33 33 H 0.97001 * 120.00347 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.07950 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.90590 * 180.29754 * 19 18 17 36 36 H 1.08004 * 119.82787 * 179.69864 * 20 19 18 37 37 H 1.08006 * 120.09053 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4541 2.4326 0.1241 5 8 0.2372 2.4370 0.1308 6 7 2.1328 3.5921 0.2307 7 6 1.4056 4.8583 0.3487 8 6 2.4046 6.0130 0.4476 9 6 1.6564 7.3155 0.5684 10 1 0.5765 7.3194 0.5744 11 6 2.3508 8.5022 0.6722 12 7 3.6658 8.4974 0.6653 13 14 1.4235 10.1168 0.8226 14 1 -0.0376 9.8518 0.8064 15 1 1.7913 10.7820 2.0983 16 1 1.7795 11.0001 -0.3168 17 6 2.2431 -1.2749 -0.0006 18 6 3.0325 -1.6300 -1.0991 19 6 3.7241 -2.8228 -1.0902 20 6 3.6292 -3.6741 -0.0031 21 6 2.8452 -3.3326 1.0863 22 17 2.7343 -4.4080 2.4446 23 6 2.1519 -2.1391 1.0944 24 1 -0.3634 0.5420 -0.8731 25 1 -0.3633 -1.0271 -0.0329 26 1 -0.3633 0.4851 0.9060 27 1 3.2572 1.1697 -0.0915 28 1 3.1028 3.5886 0.2256 29 1 0.7745 4.9980 -0.5290 30 1 0.7838 4.8382 1.2437 31 1 3.0357 5.8732 1.3253 32 1 3.0263 6.0331 -0.4474 33 1 4.1543 9.3323 0.7388 34 1 3.1043 -0.9691 -1.9503 35 1 4.3377 -3.0958 -1.9360 36 1 4.1696 -4.6092 -0.0043 37 1 1.5411 -1.8734 1.9446 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273069920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:41 Heat of formation + Delta-G solvation = -38.751702 kcal Electronic energy + Delta-G solvation = -19434.956784 eV Core-core repulsion = 16201.851921 eV Total energy + Delta-G solvation = -3233.104863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95145 -40.15126 -37.57660 -36.79099 -35.64720 -34.80153 -31.95656 -31.72752 -30.92874 -28.82446 -26.67074 -24.73582 -23.53863 -22.98955 -21.97193 -20.16287 -18.61327 -17.95464 -17.73732 -16.77518 -16.56365 -16.42311 -16.27323 -16.12459 -15.30659 -14.98482 -14.76000 -14.70362 -14.37408 -14.20304 -13.79348 -13.64796 -13.20835 -12.94427 -12.73995 -12.63305 -12.51844 -12.49204 -12.36622 -12.23334 -11.87794 -11.64331 -11.42605 -10.66571 -10.61769 -10.51265 -9.98563 -9.82706 -9.57515 -8.24761 -6.35150 -0.15591 0.18588 0.44801 1.12634 1.40658 1.41652 1.54783 2.25639 2.31551 2.46897 2.60642 3.10008 3.45916 3.84257 3.95253 4.07705 4.14386 4.20493 4.36996 4.49388 4.50204 4.58619 4.62451 4.79888 4.85972 4.86533 5.02014 5.13298 5.25582 5.29413 5.35278 5.39331 5.50639 5.52411 5.58172 5.76756 5.79250 6.16048 6.68339 6.78615 7.30995 7.34278 8.87362 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.002280 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.587529 B =12278.382955 C =12342.856876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.010 3.990 3 C -0.208 4.208 4 C 0.532 3.468 5 O -0.581 6.581 6 N -0.715 5.715 7 C 0.142 3.858 8 C 0.022 3.978 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.006 3.994 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.056 4.056 18 C -0.100 4.100 19 C -0.099 4.099 20 C -0.107 4.107 21 C -0.044 4.044 22 Cl -0.072 7.072 23 C -0.103 4.103 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.153 0.847 28 H 0.410 0.590 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.007 0.993 32 H 0.009 0.991 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -27.396 -2.649 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.008 3.992 3 C -0.228 4.228 4 C 0.323 3.677 5 O -0.464 6.464 6 N -0.366 5.366 7 C 0.019 3.981 8 C -0.015 4.015 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.193 4.193 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.057 4.057 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.071 4.071 22 Cl -0.043 7.043 23 C -0.122 4.122 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.245 0.755 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.164 -27.345 -2.503 27.484 hybrid contribution 0.124 1.155 0.419 1.235 sum 1.288 -26.190 -2.084 26.304 Atomic orbital electron populations 1.20918 0.90263 1.01800 1.03281 1.21090 0.96050 0.91205 0.90844 1.22762 1.01186 0.90174 1.08703 1.18849 0.87272 0.85060 0.76481 1.90764 1.15141 1.88020 1.52497 1.46056 1.11025 1.06168 1.73308 1.21191 0.95038 0.82308 0.99605 1.19139 0.94228 0.91904 0.96278 1.21502 0.93582 0.92422 1.50913 0.92313 1.25884 0.95784 1.03091 0.94511 1.70060 1.07412 1.28265 1.50920 0.85390 0.78957 0.78744 0.77920 1.18963 1.20232 1.20160 1.18779 0.98383 0.93257 0.95249 1.21708 0.94894 0.97664 0.97548 1.21411 0.98703 0.92929 0.98647 1.21488 0.97793 1.01414 0.91900 1.20919 1.02011 0.92948 0.91183 1.98381 1.97411 1.64153 1.44391 1.21163 0.99749 0.92414 0.98839 0.90938 0.91013 0.91222 0.82952 0.75452 0.93487 0.93653 0.97423 0.97300 0.92528 0.83616 0.81724 0.82898 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 8.33 71.24 0.59 -1.96 16 2 C 0.01 0.23 5.48 -18.29 -0.10 0.13 16 3 C -0.21 -5.05 9.64 23.62 0.23 -4.83 16 4 C 0.53 17.79 7.71 86.38 0.67 18.46 16 5 O -0.58 -23.01 13.15 -4.33 -0.06 -23.07 16 6 N -0.72 -25.06 5.55 -467.35 -2.59 -27.66 16 7 C 0.14 6.17 5.61 86.38 0.48 6.65 16 8 C 0.02 1.11 5.09 29.85 0.15 1.27 16 9 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 10 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 11 C 0.01 0.34 5.46 84.66 0.46 0.80 16 12 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 13 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 C -0.06 -1.01 5.23 -20.15 -0.11 -1.11 16 18 C -0.10 -1.39 9.73 22.58 0.22 -1.17 16 19 C -0.10 -1.04 10.03 22.22 0.22 -0.82 16 20 C -0.11 -1.30 9.82 22.37 0.22 -1.08 16 21 C -0.04 -0.70 6.31 22.28 0.14 -0.56 16 22 Cl -0.07 -1.15 28.95 -2.72 -0.08 -1.23 16 23 C -0.10 -1.83 9.56 22.60 0.22 -1.61 16 24 H 0.07 1.96 7.33 -2.39 -0.02 1.94 16 25 H 0.07 1.38 7.99 -2.39 -0.02 1.36 16 26 H 0.07 1.94 7.17 -2.39 -0.02 1.92 16 27 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.41 12.33 8.45 -92.71 -0.78 11.54 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.53 338.76 3.51 -63.02 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.30 Total: 13.64 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.63 Total: -16.26 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.31 Total: -81.87 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.06 Total: -23.07 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -66.53 3.51 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273069920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.270 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds