Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34812 * 120.00418 * 2 1 4 4 C 1.47205 * 120.00258 * 168.65854 * 3 2 1 5 5 C 1.39856 * 120.16352 * 312.16254 * 4 3 2 6 6 C 1.37874 * 119.85195 * 180.02562 * 5 4 3 7 7 C 1.38404 * 120.18719 * 0.02562 * 6 5 4 8 8 C 1.38493 * 120.33078 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 119.92759 * 180.02562 * 8 7 6 10 10 C 1.38031 * 120.14662 * 359.97438 * 8 7 6 11 11 C 1.46436 * 119.99973 * 179.97438 * 2 1 3 12 12 O 1.21697 * 119.99768 * 172.99700 * 11 2 1 13 13 N 1.34770 * 119.99563 * 352.99918 * 11 2 1 14 14 C 1.46507 * 119.99773 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47397 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47097 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00114 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99661 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99776 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00300 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47031 * 89.99855 * 20 18 16 22 22 H 1.48495 * 109.47144 * 210.00134 * 20 18 16 23 23 H 1.48498 * 109.46862 * 330.00062 * 20 18 16 24 24 H 1.08999 * 109.46928 * 90.00377 * 1 2 3 25 25 H 1.09002 * 109.47385 * 210.00468 * 1 2 3 26 26 H 1.09001 * 109.46852 * 330.00139 * 1 2 3 27 27 H 1.07999 * 119.99102 * 348.65506 * 3 2 1 28 28 H 1.07994 * 120.07389 * 0.02562 * 5 4 3 29 29 H 1.08003 * 119.90599 * 180.02562 * 6 5 4 30 30 H 1.08005 * 119.83584 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.10219 * 180.27608 * 10 8 7 32 32 H 0.97000 * 120.00431 * 359.97438 * 13 11 2 33 33 H 1.09001 * 109.46848 * 299.99904 * 14 13 11 34 34 H 1.09003 * 109.47283 * 59.99591 * 14 13 11 35 35 H 1.08998 * 109.46502 * 299.99871 * 15 14 13 36 36 H 1.08994 * 109.47376 * 59.99270 * 15 14 13 37 37 H 0.97002 * 120.00080 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 3.6316 1.1799 0.2507 5 6 4.1645 0.4662 1.3290 6 6 5.5240 0.4828 1.5582 7 6 6.3615 1.2036 0.7248 8 6 5.8420 1.9130 -0.3452 9 17 6.9022 2.8130 -1.3843 10 6 4.4833 1.9051 -0.5880 11 6 2.2392 -1.2682 0.0006 12 8 3.4493 -1.2721 -0.1279 13 7 1.5728 -2.4308 0.1433 14 6 2.3053 -3.6996 0.1445 15 6 1.3203 -4.8572 0.3201 16 6 2.0738 -6.1622 0.3206 17 1 3.1478 -6.1658 0.2066 18 6 1.3921 -7.3517 0.4665 19 7 2.0497 -8.4907 0.4675 20 14 -0.4655 -7.3456 0.6643 21 1 -1.1059 -7.4295 -0.6728 22 1 -0.8796 -8.5114 1.4856 23 1 -0.8874 -6.0910 1.3374 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6569 2.0936 -0.1840 28 1 3.5127 -0.0965 1.9807 29 1 5.9365 -0.0684 2.3904 30 1 7.4257 1.2122 0.9093 31 1 4.0794 2.4549 -1.4252 32 1 0.6082 -2.4276 0.2461 33 1 2.8350 -3.8141 -0.8012 34 1 3.0223 -3.7045 0.9655 35 1 0.7903 -4.7428 1.2656 36 1 0.6036 -4.8521 -0.5011 37 1 1.5700 -9.3276 0.5698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273076899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = -27.817811 kcal Electronic energy + Delta-G solvation = -20204.403990 eV Core-core repulsion = 16971.773255 eV Total energy + Delta-G solvation = -3232.630734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20622 -39.77972 -37.47957 -36.66143 -35.66201 -34.81304 -32.57478 -31.78064 -31.30394 -27.65254 -27.10055 -24.36354 -23.50103 -22.90130 -22.31134 -20.15221 -18.98148 -18.46914 -17.18174 -16.90095 -16.52232 -16.36318 -16.19052 -15.98153 -15.15131 -14.90413 -14.73534 -14.64255 -14.48614 -14.12702 -13.84530 -13.53229 -13.39034 -13.08901 -13.02433 -12.52795 -12.49377 -12.30702 -12.18406 -12.12762 -11.78554 -11.76181 -11.52380 -10.88311 -10.79679 -10.46805 -10.06450 -9.64695 -9.09764 -8.30861 -6.38443 -0.27092 0.33380 0.75460 1.16064 1.38618 1.41437 1.52646 2.27577 2.36273 2.36599 2.75353 3.04230 3.64989 3.82765 3.92139 4.10274 4.20259 4.25460 4.33756 4.41751 4.46649 4.59950 4.73734 4.79348 4.88212 4.91218 5.06441 5.14287 5.16195 5.30028 5.36411 5.39289 5.43176 5.44233 5.62678 5.66433 5.86472 6.21206 6.63994 6.71579 7.26137 7.32093 8.86052 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.003174 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.296023 B = 8820.113424 C = 9595.113512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.169 4.169 3 C -0.037 4.037 4 C -0.053 4.053 5 C -0.061 4.061 6 C -0.125 4.125 7 C -0.113 4.113 8 C -0.053 4.053 9 Cl -0.074 7.074 10 C -0.104 4.104 11 C 0.529 3.471 12 O -0.569 6.569 13 N -0.713 5.713 14 C 0.148 3.852 15 C -0.012 4.012 16 C -0.540 4.540 17 H 0.027 0.973 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.178 0.822 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.411 0.589 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 26.303 0.566 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.172 4.172 3 C -0.056 4.056 4 C -0.054 4.054 5 C -0.080 4.080 6 C -0.143 4.143 7 C -0.132 4.132 8 C -0.080 4.080 9 Cl -0.045 7.045 10 C -0.122 4.122 11 C 0.318 3.682 12 O -0.450 6.450 13 N -0.365 5.365 14 C 0.024 3.976 15 C -0.050 4.050 16 C -0.578 4.578 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.158 1.158 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.195 0.805 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.249 0.751 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.300 26.161 0.398 26.265 hybrid contribution -0.239 -1.009 -0.073 1.039 sum -2.539 25.152 0.325 25.282 Atomic orbital electron populations 1.20888 0.87513 1.04610 1.03983 1.22038 0.98185 0.91002 1.05962 1.22470 0.91088 0.98520 0.93515 1.19024 0.94176 0.96846 0.95304 1.21279 0.95590 0.94499 0.96600 1.21160 0.93352 0.99373 1.00453 1.21260 1.01114 0.96863 0.93962 1.20849 0.91472 1.00244 0.95397 1.98348 1.65830 1.73765 1.66595 1.21235 0.91101 0.99921 0.99966 1.18997 0.87352 0.85331 0.76509 1.90873 1.15327 1.87818 1.50966 1.46113 1.11833 1.05676 1.72877 1.20969 0.94808 0.82180 0.99669 1.19643 0.95485 0.91923 0.97944 1.21255 0.94326 0.91500 1.50736 0.95483 1.26105 1.04906 0.94585 0.93783 1.70080 1.38749 0.98693 1.51608 0.85531 0.78031 0.79101 0.79175 1.18986 1.21271 1.15775 0.89621 0.90950 0.88292 0.80474 0.86986 0.84253 0.83948 0.83472 0.75132 0.94208 0.93825 0.94450 0.94744 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.75 71.24 0.69 -0.68 16 2 C -0.17 -3.42 5.89 -18.52 -0.11 -3.53 16 3 C -0.04 -0.66 9.40 23.84 0.22 -0.44 16 4 C -0.05 -1.27 4.34 -20.15 -0.09 -1.36 16 5 C -0.06 -1.63 6.79 22.58 0.15 -1.48 16 6 C -0.13 -3.15 10.03 22.22 0.22 -2.93 16 7 C -0.11 -2.71 9.82 22.37 0.22 -2.49 16 8 C -0.05 -1.27 6.31 22.28 0.14 -1.13 16 9 Cl -0.07 -1.58 28.95 -2.72 -0.08 -1.66 16 10 C -0.10 -2.38 9.57 22.60 0.22 -2.16 16 11 C 0.53 16.04 6.91 86.38 0.60 16.64 16 12 O -0.57 -21.61 12.49 -4.34 -0.05 -21.66 16 13 N -0.71 -21.88 5.51 -467.32 -2.57 -24.46 16 14 C 0.15 5.99 5.61 86.38 0.48 6.47 16 15 C -0.01 -0.54 4.16 29.85 0.12 -0.41 16 16 C -0.54 -30.79 9.66 25.60 0.25 -30.55 16 17 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 18 C 0.00 0.19 5.47 84.66 0.46 0.65 16 19 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 20 Si 0.96 41.88 27.47 68.60 1.88 43.76 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.87 6.46 -2.39 -0.02 0.85 16 26 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 28 H 0.11 3.03 7.44 -2.91 -0.02 3.01 16 29 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.41 9.88 6.46 -92.71 -0.60 9.28 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 36 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 37 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -72.52 329.01 3.50 -69.02 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.43 Total: 17.42 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.59 Total: -23.39 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.28 Total: -83.49 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.88 Total: 43.76 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -72.52 3.50 -69.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273076899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds