Wall clock time and date at job start Tue Mar 31 2020 07:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21661 * 119.99623 * 359.97438 * 14 13 3 16 16 C 1.46867 * 120.00066 * 180.02562 * 14 13 3 17 17 S 1.75800 * 125.22984 * 0.02562 * 16 14 13 18 18 C 1.76252 * 90.68933 * 179.97438 * 17 16 14 19 19 N 1.32272 * 141.81220 * 180.02562 * 18 17 16 20 20 C 1.33949 * 109.18677 * 179.97438 * 19 18 17 21 21 C 1.34217 * 108.46589 * 0.02562 * 20 19 18 22 22 N 1.35441 * 109.40512 * 0.02562 * 18 17 16 23 23 C 1.33018 * 125.22717 * 179.71375 * 16 14 13 24 24 C 1.50697 * 121.94122 * 0.03824 * 23 16 14 25 25 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.08002 * 125.76690 * 179.97438 * 20 19 18 33 33 H 1.07998 * 126.44884 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47663 * 90.01943 * 24 23 16 35 35 H 1.09001 * 109.47037 * 210.02214 * 24 23 16 36 36 H 1.09007 * 109.47151 * 330.02146 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3417 2.6325 0.4313 16 6 0.0470 3.3214 2.6218 17 16 1.0577 3.4493 4.0545 18 6 -0.2157 4.3264 4.9006 19 7 -0.4894 4.8986 6.0613 20 6 -1.7259 5.4120 6.0183 21 6 -2.2485 5.1611 4.8078 22 7 -1.2866 4.4645 4.0829 23 6 -1.1212 3.9165 2.8468 24 6 -2.2010 3.9758 1.7973 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 -2.2192 5.9381 6.8221 33 1 -3.2310 5.4461 4.4614 34 1 -2.8469 3.1028 1.8906 35 1 -2.7919 4.8814 1.9347 36 1 -1.7451 3.9862 0.8072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273870788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:18 Heat of formation + Delta-G solvation = 56.375895 kcal Electronic energy + Delta-G solvation = -21078.009176 eV Core-core repulsion = 17883.365812 eV Total energy + Delta-G solvation = -3194.643364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.82113 -39.47700 -36.89681 -35.15900 -32.59597 -31.43130 -30.86599 -30.27898 -28.34540 -26.86800 -23.95656 -23.16451 -22.41329 -20.81634 -19.88756 -19.60709 -18.29826 -17.32909 -16.42038 -15.88356 -15.73133 -15.26532 -14.79582 -14.63593 -14.41433 -14.01944 -13.51152 -13.24744 -13.08520 -12.75930 -12.51382 -12.26844 -11.67682 -11.38068 -11.32749 -11.25001 -11.05225 -10.88615 -10.56873 -10.42122 -10.36852 -10.27564 -9.72485 -9.39094 -9.15911 -9.00091 -8.58598 -8.04601 -7.72832 -6.19813 -4.29831 0.49931 0.76537 1.49590 1.93398 2.31409 2.71488 3.22715 3.28188 3.29364 3.49637 3.79016 4.27327 4.39707 4.44814 4.79940 4.99838 5.12057 5.19533 5.31574 5.44342 5.57638 5.86168 6.11156 6.29950 6.30525 6.36200 6.54887 6.66264 6.94183 7.06633 7.17288 7.27095 7.49282 7.51514 7.60642 7.77919 8.06899 8.41168 8.61036 8.84453 9.37232 10.85409 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.004237 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.353868 B = 6606.093077 C = 7317.703586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.692 5.692 14 C 0.585 3.415 15 O -0.526 6.526 16 C -0.244 4.244 17 S 0.214 5.786 18 C 0.141 3.859 19 N -0.462 5.462 20 C 0.019 3.981 21 C -0.056 4.056 22 N -0.401 5.401 23 C 0.144 3.856 24 C -0.107 4.107 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.025 0.975 28 H 0.103 0.897 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.388 0.612 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 6.660 10.798 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.171 3.829 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.339 5.339 14 C 0.367 3.633 15 O -0.406 6.406 16 C -0.366 4.366 17 S 0.465 5.535 18 C -0.225 4.225 19 N -0.185 5.185 20 C -0.130 4.130 21 C -0.188 4.188 22 N -0.080 5.080 23 C 0.029 3.971 24 C -0.165 4.165 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.220 0.780 32 H 0.204 0.796 33 H 0.201 0.799 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.393 6.106 10.873 15.031 hybrid contribution -0.677 0.470 -0.484 0.956 sum -9.071 6.576 10.389 15.279 Atomic orbital electron populations 1.21853 0.98301 0.98317 1.01135 1.21964 0.92671 0.99529 1.02651 1.18924 0.94594 0.89286 0.80096 0.92748 1.21166 0.90405 1.39438 1.06704 0.91979 1.24861 0.98749 0.94576 0.95255 1.69872 1.35339 1.37207 1.09398 0.86493 0.84609 0.78422 0.77535 1.20052 1.21085 1.20095 1.46451 1.13501 1.54951 1.19008 1.16483 0.83482 0.79123 0.84165 1.90740 1.51339 1.59906 1.38591 1.23744 0.98237 1.12667 1.01994 1.84842 1.09994 1.57356 1.01286 1.26562 0.94508 1.08635 0.92756 1.70618 1.15778 1.14776 1.17367 1.22431 0.91449 1.02471 0.96656 1.22831 0.96493 1.06121 0.93352 1.43704 1.14331 1.39747 1.10257 1.19257 0.97434 0.95127 0.85313 1.21052 0.94974 1.02567 0.97942 0.94422 0.92978 0.95635 0.87934 0.94804 0.92383 0.77963 0.79617 0.79937 0.89426 0.91413 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.46 2.24 -69.09 -0.16 6.31 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.69 11.28 55.43 0.63 -23.06 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.69 -13.75 5.02 -56.19 -0.28 -14.03 16 14 C 0.58 10.93 6.34 -12.77 -0.08 10.85 16 15 O -0.53 -10.75 11.07 5.22 0.06 -10.69 16 16 C -0.24 -3.85 6.33 -37.90 -0.24 -4.09 16 17 S 0.21 3.03 22.41 -107.50 -2.41 0.62 16 18 C 0.14 2.12 8.92 -88.51 -0.79 1.34 16 19 N -0.46 -6.88 11.32 -13.52 -0.15 -7.03 16 20 C 0.02 0.21 11.82 -18.05 -0.21 0.00 16 21 C -0.06 -0.61 11.95 -15.65 -0.19 -0.80 16 22 N -0.40 -5.53 3.14 -59.28 -0.19 -5.71 16 23 C 0.14 2.05 6.79 -82.45 -0.56 1.49 16 24 C -0.11 -1.30 9.49 36.00 0.34 -0.96 16 25 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 26 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.10 2.62 5.94 -51.93 -0.31 2.32 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 6.94 7.64 -40.82 -0.31 6.63 16 32 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 1.77 5.74 -51.93 -0.30 1.47 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -29.12 312.06 -8.86 -37.98 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.09 Total: 6.04 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.11 Total: -3.82 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.00 Total: -49.83 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.06 Total: -10.69 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.41 Total: 0.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.12 -8.86 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.360 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds