Wall clock time and date at job start Tue Mar 31 2020 07:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21661 * 119.99623 * 359.97438 * 14 13 3 16 16 C 1.46867 * 120.00066 * 180.02562 * 14 13 3 17 17 S 1.75800 * 125.22984 * 0.02562 * 16 14 13 18 18 C 1.76252 * 90.68933 * 179.97438 * 17 16 14 19 19 N 1.32272 * 141.81220 * 180.02562 * 18 17 16 20 20 C 1.33949 * 109.18677 * 179.97438 * 19 18 17 21 21 C 1.34217 * 108.46589 * 0.02562 * 20 19 18 22 22 N 1.35441 * 109.40512 * 0.02562 * 18 17 16 23 23 C 1.33018 * 125.22717 * 179.71375 * 16 14 13 24 24 C 1.50697 * 121.94122 * 0.03824 * 23 16 14 25 25 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 27 27 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.08002 * 125.76690 * 179.97438 * 20 19 18 33 33 H 1.07998 * 126.44884 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47663 * 90.01943 * 24 23 16 35 35 H 1.09001 * 109.47037 * 210.02214 * 24 23 16 36 36 H 1.09007 * 109.47151 * 330.02146 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3417 2.6325 0.4313 16 6 0.0470 3.3214 2.6218 17 16 1.0577 3.4493 4.0545 18 6 -0.2157 4.3264 4.9006 19 7 -0.4894 4.8986 6.0613 20 6 -1.7259 5.4120 6.0183 21 6 -2.2485 5.1611 4.8078 22 7 -1.2866 4.4645 4.0829 23 6 -1.1212 3.9165 2.8468 24 6 -2.2010 3.9758 1.7973 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 -2.2192 5.9381 6.8221 33 1 -3.2310 5.4461 4.4614 34 1 -2.8469 3.1028 1.8906 35 1 -2.7919 4.8814 1.9347 36 1 -1.7451 3.9862 0.8072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:18 Heat of formation + Delta-G solvation = 39.297815 kcal Electronic energy + Delta-G solvation = -21078.749737 eV Core-core repulsion = 17883.365812 eV Total energy + Delta-G solvation = -3195.383925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.82862 -40.96698 -38.10233 -36.83120 -34.40392 -33.02714 -32.13329 -31.23881 -29.67987 -28.50096 -25.39661 -24.59273 -23.68287 -22.05683 -21.34130 -21.08682 -19.41391 -18.93180 -17.51958 -17.46911 -17.27752 -16.57019 -16.28619 -16.09839 -15.51977 -15.28935 -14.76479 -14.58864 -14.37590 -14.10770 -13.86833 -13.53378 -13.48405 -13.16332 -12.88907 -12.65641 -12.47289 -12.33179 -12.17885 -12.07605 -11.65310 -11.54865 -11.38774 -11.09268 -10.88572 -10.52730 -10.05999 -9.72090 -8.76992 -8.16456 -6.33275 -0.62425 -0.29552 0.40432 0.87694 1.26083 1.47063 1.47583 1.55369 1.79043 2.06539 2.31252 2.51940 3.13512 3.27917 3.51307 3.68007 3.99787 4.22879 4.37344 4.51966 4.53310 4.58992 4.65427 4.75532 4.87793 5.07108 5.13067 5.27465 5.40724 5.42869 5.48819 5.58776 5.68991 5.77139 5.86369 6.15620 6.55736 6.70255 6.77564 7.21786 7.40525 8.88404 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.004237 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.353868 B = 6606.093077 C = 7317.703586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.281 3.719 4 H 0.013 0.987 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.696 5.696 14 C 0.588 3.412 15 O -0.548 6.548 16 C -0.272 4.272 17 S 0.218 5.782 18 C 0.113 3.887 19 N -0.485 5.485 20 C 0.011 3.989 21 C -0.043 4.043 22 N -0.407 5.407 23 C 0.163 3.837 24 C -0.104 4.104 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.266 0.734 31 H 0.397 0.603 32 H 0.224 0.776 33 H 0.226 0.774 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 7.665 12.482 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.179 3.821 4 H 0.031 0.969 5 C -0.592 4.592 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.344 5.344 14 C 0.373 3.627 15 O -0.429 6.429 16 C -0.394 4.394 17 S 0.469 5.531 18 C -0.252 4.252 19 N -0.210 5.210 20 C -0.136 4.136 21 C -0.173 4.173 22 N -0.087 5.087 23 C 0.047 3.953 24 C -0.163 4.163 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.556 7.132 12.604 17.350 hybrid contribution -0.467 0.271 -0.910 1.058 sum -10.023 7.402 11.694 17.088 Atomic orbital electron populations 1.21692 0.96618 0.99397 1.00507 1.21817 0.94116 0.98827 1.01484 1.18498 0.93794 0.89355 0.80467 0.96933 1.21518 0.91399 1.39285 1.06982 0.91351 1.25660 1.02988 0.94237 0.94957 1.70011 1.37000 1.37929 1.09845 0.85496 0.79458 0.78428 0.77568 1.19142 1.21057 1.19763 1.46187 1.14507 1.55552 1.18113 1.16698 0.82599 0.78425 0.84959 1.90731 1.51765 1.60584 1.39836 1.23267 0.99793 1.14836 1.01543 1.84672 1.09962 1.57834 1.00600 1.26627 0.95203 1.09990 0.93428 1.70597 1.17724 1.15123 1.17542 1.23173 0.90281 1.02122 0.98057 1.23681 0.97203 1.03790 0.92662 1.43901 1.14820 1.40094 1.09864 1.19490 0.97078 0.92973 0.85736 1.21080 0.94614 1.04660 0.95935 0.93870 0.94674 0.93603 0.90543 0.94307 0.92471 0.76889 0.75928 0.75704 0.88307 0.88164 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.28 13.82 2.24 44.25 0.10 13.92 16 4 H 0.01 0.73 7.58 -2.38 -0.02 0.71 16 5 C -0.55 -28.55 8.73 25.60 0.22 -28.33 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -50.19 11.28 21.45 0.24 -49.95 16 9 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.70 -28.27 5.02 -449.91 -2.26 -30.53 16 14 C 0.59 22.34 6.34 86.50 0.55 22.89 16 15 O -0.55 -22.92 11.07 -4.22 -0.05 -22.97 16 16 C -0.27 -8.50 6.33 23.37 0.15 -8.35 16 17 S 0.22 6.13 22.41 -56.49 -1.27 4.87 16 18 C 0.11 3.23 8.92 179.61 1.60 4.83 16 19 N -0.49 -13.50 11.32 -196.67 -2.23 -15.73 16 20 C 0.01 0.21 11.82 83.45 0.99 1.20 16 21 C -0.04 -0.76 11.95 82.62 0.99 0.23 16 22 N -0.41 -10.19 3.14 -341.46 -1.07 -11.26 16 23 C 0.16 4.41 6.79 40.71 0.28 4.68 16 24 C -0.10 -2.32 9.49 71.23 0.68 -1.65 16 25 H 0.04 1.75 5.65 -2.38 -0.01 1.73 16 26 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 4.04 5.94 -2.38 -0.01 4.03 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 31 H 0.40 14.48 7.64 -92.71 -0.71 13.77 16 32 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.23 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 2.83 5.74 -2.38 -0.01 2.82 16 Total: -1.00 -64.37 312.06 2.59 -61.79 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.42 Total: 19.82 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 6.77 Total: 0.72 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -5.32 Total: -107.47 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.27 Total: 4.87 kcal Total: -64.37 2.59 -61.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.083 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds