Wall clock time and date at job start Tue Mar 31 2020 07:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21673 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.46867 * 120.00104 * 179.97438 * 14 13 3 17 17 S 1.75803 * 125.22653 * 0.02680 * 16 14 13 18 18 C 1.76251 * 90.69056 * 179.97438 * 17 16 14 19 19 N 1.32270 * 141.81436 * 179.97438 * 18 17 16 20 20 C 1.33953 * 109.18888 * 180.02562 * 19 18 17 21 21 C 1.34224 * 108.46363 * 0.02562 * 20 19 18 22 22 N 1.35446 * 109.40607 * 0.02562 * 18 17 16 23 23 C 1.33015 * 125.22855 * 179.71635 * 16 14 13 24 24 C 1.50689 * 121.94335 * 0.02562 * 23 16 14 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.07996 * 125.77045 * 179.97438 * 20 19 18 33 33 H 1.08004 * 126.44752 * 180.02562 * 21 20 19 34 34 H 1.09007 * 109.47642 * 90.02214 * 24 23 16 35 35 H 1.09005 * 109.47157 * 210.02313 * 24 23 16 36 36 H 1.09007 * 109.47631 * 330.02112 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6326 -0.4310 16 6 0.0467 3.3216 -2.6216 17 16 1.0568 3.4482 -4.0549 18 6 -0.2168 4.3248 -4.9010 19 7 -0.4910 4.8962 -6.0620 20 6 -1.7274 5.4098 -6.0189 21 6 -2.2491 5.1608 -4.8075 22 7 -1.2870 4.4647 -4.0827 23 6 -1.1255 3.9073 -2.8501 24 6 -2.2096 3.9560 -1.8047 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 -2.2208 5.9360 -6.8226 33 1 -3.2313 5.4464 -4.4608 34 1 -2.0946 4.8581 -1.2036 35 1 -3.1845 3.9662 -2.2923 36 1 -2.1342 3.0790 -1.1617 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:21 Heat of formation + Delta-G solvation = 39.119925 kcal Electronic energy + Delta-G solvation = -21079.512582 eV Core-core repulsion = 17884.120943 eV Total energy + Delta-G solvation = -3195.391639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.82746 -40.96667 -38.10053 -36.82960 -34.40476 -33.02885 -32.13735 -31.23787 -29.67465 -28.50577 -25.40130 -24.58782 -23.68563 -22.05551 -21.34226 -21.08739 -19.41406 -18.93396 -17.54206 -17.44394 -17.28595 -16.57066 -16.27633 -16.09556 -15.53658 -15.26343 -14.73483 -14.58980 -14.47113 -14.12489 -13.80749 -13.55162 -13.44571 -13.17123 -12.88321 -12.69058 -12.48077 -12.33056 -12.17509 -12.06606 -11.64777 -11.55069 -11.38826 -11.08109 -10.88627 -10.53044 -10.05802 -9.72780 -8.77020 -8.16798 -6.33451 -0.62422 -0.29557 0.40412 0.87671 1.26078 1.45783 1.47089 1.56825 1.79022 2.06399 2.31226 2.51762 3.13409 3.27914 3.51311 3.67970 3.99835 4.22904 4.37323 4.51721 4.53369 4.58881 4.65333 4.75395 4.87811 5.06914 5.13167 5.27384 5.40757 5.42872 5.48626 5.58927 5.68957 5.77075 5.86284 6.15487 6.55740 6.70369 6.77494 7.21748 7.40421 8.88350 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.004238 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.685970 B = 6605.102057 C = 7317.860427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.281 3.719 4 H 0.013 0.987 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.263 1.263 13 N -0.696 5.696 14 C 0.588 3.412 15 O -0.548 6.548 16 C -0.272 4.272 17 S 0.218 5.782 18 C 0.113 3.887 19 N -0.485 5.485 20 C 0.011 3.989 21 C -0.043 4.043 22 N -0.407 5.407 23 C 0.163 3.837 24 C -0.105 4.105 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.397 0.603 32 H 0.224 0.776 33 H 0.227 0.773 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 7.601 -12.526 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 C 0.179 3.821 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.343 5.343 14 C 0.373 3.627 15 O -0.429 6.429 16 C -0.394 4.394 17 S 0.469 5.531 18 C -0.252 4.252 19 N -0.210 5.210 20 C -0.136 4.136 21 C -0.173 4.173 22 N -0.087 5.087 23 C 0.047 3.953 24 C -0.163 4.163 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.589 7.070 -12.653 17.379 hybrid contribution -0.455 0.313 0.945 1.095 sum -10.044 7.384 -11.707 17.101 Atomic orbital electron populations 1.21697 0.96618 0.99426 1.00500 1.21812 0.94124 0.98803 1.01484 1.18506 0.93810 0.89368 0.80464 0.96939 1.21543 0.91402 1.39303 1.06827 0.91352 1.25658 1.02984 0.94248 0.94980 1.70017 1.36939 1.38097 1.09748 0.85440 0.79482 0.77487 0.78528 1.20413 1.20868 1.18746 1.46187 1.14450 1.55595 1.18113 1.16700 0.82646 0.78305 0.85034 1.90734 1.51344 1.61333 1.39528 1.23266 0.99676 1.14827 1.01656 1.84675 1.10056 1.57933 1.00409 1.26627 0.95278 1.09971 0.93372 1.70597 1.17710 1.15142 1.17536 1.23175 0.90300 1.02150 0.98010 1.23683 0.97200 1.03852 0.92599 1.43904 1.14864 1.39868 1.10047 1.19489 0.97046 0.92926 0.85812 1.21082 0.93895 1.06368 0.94966 0.94665 0.93571 0.93870 0.90575 0.94269 0.92482 0.76887 0.75929 0.75701 0.88477 0.88099 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.51 71.98 0.61 -4.64 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.79 2.24 44.24 0.10 13.89 16 4 H 0.01 0.73 7.58 -2.38 -0.02 0.71 16 5 C -0.55 -28.50 8.73 25.60 0.22 -28.27 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -50.20 11.29 21.45 0.24 -49.95 16 9 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 N -0.70 -28.26 5.02 -449.89 -2.26 -30.51 16 14 C 0.59 22.33 6.33 86.50 0.55 22.88 16 15 O -0.55 -22.93 11.07 -4.26 -0.05 -22.98 16 16 C -0.27 -8.50 6.33 23.37 0.15 -8.35 16 17 S 0.22 6.13 22.41 -56.49 -1.27 4.86 16 18 C 0.11 3.23 8.92 179.61 1.60 4.83 16 19 N -0.49 -13.50 11.32 -196.67 -2.23 -15.73 16 20 C 0.01 0.21 11.82 83.45 0.99 1.20 16 21 C -0.04 -0.76 11.95 82.62 0.99 0.23 16 22 N -0.41 -10.19 3.14 -341.46 -1.07 -11.26 16 23 C 0.16 4.41 6.79 40.71 0.28 4.68 16 24 C -0.10 -2.33 9.49 71.23 0.68 -1.65 16 25 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.74 5.65 -2.38 -0.01 1.72 16 28 H 0.08 4.02 5.95 -2.39 -0.01 4.01 16 29 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 31 H 0.40 14.48 7.64 -92.71 -0.71 13.77 16 32 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.23 1.83 8.06 -2.91 -0.02 1.80 16 34 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 2.83 5.74 -2.38 -0.01 2.82 16 Total: -1.00 -64.42 312.09 2.59 -61.83 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.42 Total: 19.71 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.77 Total: 0.75 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -5.32 Total: -107.45 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.05 Total: -22.98 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.27 Total: 4.86 kcal Total: -64.42 2.59 -61.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.948 kcal (2) G-P(sol) polarization free energy of solvation -64.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds