Wall clock time and date at job start Tue Mar 31 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 120.00696 * 2 1 4 4 C 1.38219 * 120.01294 * 180.02562 * 3 2 1 5 5 C 1.38274 * 120.02531 * 359.71012 * 4 3 2 6 6 C 1.38191 * 120.01033 * 0.54421 * 5 4 3 7 7 C 1.50699 * 120.00351 * 179.74583 * 6 5 4 8 8 C 1.50697 * 109.47484 * 264.72793 * 7 6 5 9 9 O 1.21300 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99657 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99781 * 224.28146 * 11 10 8 13 13 C 1.38952 * 120.00387 * 44.28911 * 11 10 8 14 14 N 1.31416 * 119.99649 * 18.20329 * 13 11 10 15 15 Si 1.86795 * 120.00344 * 198.20541 * 13 11 10 16 16 H 1.48504 * 109.46960 * 89.99699 * 15 13 11 17 17 H 1.48495 * 109.47154 * 209.99862 * 15 13 11 18 18 H 1.48506 * 109.47144 * 330.00038 * 15 13 11 19 19 C 1.46497 * 120.00096 * 359.97438 * 10 8 7 20 20 C 1.53003 * 117.49888 * 183.22646 * 19 10 8 21 21 C 1.52995 * 117.49931 * 114.60407 * 19 10 8 22 22 C 1.38330 * 120.00291 * 180.02562 * 2 1 3 23 23 Cl 1.73605 * 120.01570 * 359.94788 * 22 2 1 24 24 H 1.09004 * 109.46979 * 269.97247 * 1 2 3 25 25 H 1.09004 * 109.47198 * 29.97086 * 1 2 3 26 26 H 1.08998 * 109.47435 * 149.97149 * 1 2 3 27 27 H 1.08000 * 119.99641 * 0.03121 * 3 2 1 28 28 H 1.07999 * 119.98879 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.99282 * 180.30006 * 5 4 3 30 30 H 1.09005 * 109.46907 * 144.72935 * 7 6 5 31 31 H 1.08996 * 109.46956 * 24.73253 * 7 6 5 32 32 H 0.96994 * 119.99554 * 174.93714 * 14 13 11 33 33 H 1.09000 * 115.55059 * 328.93447 * 19 10 8 34 34 H 1.09005 * 117.49629 * 359.97438 * 20 19 10 35 35 H 1.08995 * 117.49856 * 145.01526 * 20 19 10 36 36 H 1.09007 * 117.50115 * 214.97573 * 21 19 10 37 37 H 1.08995 * 117.50205 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2725 0.0001 0.0050 6 6 3.5825 -1.1972 -0.0003 7 6 4.3369 -2.5018 -0.0001 8 6 4.4810 -2.9990 -1.4153 9 8 4.0172 -2.3569 -2.3340 10 7 5.1253 -4.1572 -1.6603 11 6 5.2559 -4.6098 -2.9479 12 1 5.0769 -5.6503 -3.1753 13 6 5.6188 -3.7299 -3.9602 14 7 6.1774 -2.5785 -3.6611 15 14 5.3127 -4.1834 -5.7462 16 1 3.9666 -3.7070 -6.1542 17 1 6.3443 -3.5454 -6.6028 18 1 5.3836 -5.6587 -5.9015 19 6 5.6860 -4.9324 -0.5509 20 6 6.4708 -6.1987 -0.8995 21 6 5.0791 -6.3092 -0.2734 22 6 2.1987 -1.1979 -0.0005 23 17 1.3312 -2.7017 0.0002 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.6583 2.1324 0.0005 28 1 4.1202 2.1326 -0.0001 29 1 5.3525 0.0008 0.0095 30 1 3.7900 -3.2376 0.5896 31 1 5.3250 -2.3499 0.4341 32 1 6.4974 -1.9967 -4.3681 33 1 6.0248 -4.3498 0.3057 34 1 6.5695 -6.4552 -1.9544 35 1 7.3262 -6.4493 -0.2723 36 1 5.0191 -6.6326 0.7658 37 1 4.2625 -6.6380 -0.9160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277558481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:27 Heat of formation + Delta-G solvation = -1.016842 kcal Electronic energy + Delta-G solvation = -21496.107476 eV Core-core repulsion = 18264.638918 eV Total energy + Delta-G solvation = -3231.468557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87345 -39.87754 -37.69900 -37.31643 -34.97526 -34.24736 -32.92193 -32.43766 -29.12103 -27.79161 -26.51783 -23.35824 -23.02592 -22.76677 -22.19417 -20.73482 -18.28449 -17.81505 -17.61014 -17.03327 -16.71580 -16.15157 -15.70381 -15.50167 -15.13011 -14.83909 -14.54220 -14.40531 -13.98998 -13.61067 -13.44365 -13.20568 -13.06394 -12.90789 -12.76754 -12.62368 -12.33866 -12.26594 -12.16764 -12.09668 -12.01589 -11.63274 -11.50717 -11.20431 -10.71791 -9.98699 -9.51773 -9.48881 -8.92230 -8.17581 -5.94515 0.28568 0.36395 1.28069 1.33804 1.42680 1.46472 2.27715 2.45722 2.67333 3.13304 3.21670 3.38835 3.73358 3.82379 4.04556 4.13221 4.18732 4.31812 4.35240 4.40145 4.49642 4.52579 4.58244 4.74348 4.79582 4.85810 4.89956 4.96143 5.08197 5.24679 5.30133 5.42012 5.47678 5.48298 5.51744 5.56667 5.97369 6.23575 7.07421 7.25915 7.75063 8.42980 8.90914 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.006084 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.123522 B = 4601.080089 C = 5188.567690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.058 4.058 7 C -0.092 4.092 8 C 0.485 3.515 9 O -0.574 6.574 10 N -0.448 5.448 11 C -0.352 4.352 12 H 0.073 0.927 13 C 0.025 3.975 14 N -0.868 5.868 15 Si 0.963 3.037 16 H -0.294 1.294 17 H -0.280 1.280 18 H -0.255 1.255 19 C 0.043 3.957 20 C -0.168 4.168 21 C -0.183 4.183 22 C -0.044 4.044 23 Cl -0.077 7.077 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.163 0.837 28 H 0.155 0.845 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 3.678 12.151 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.129 4.129 5 C -0.140 4.140 6 C -0.059 4.059 7 C -0.132 4.132 8 C 0.274 3.726 9 O -0.454 6.454 10 N -0.169 5.169 11 C -0.480 4.480 12 H 0.091 0.909 13 C -0.181 4.181 14 N -0.503 5.503 15 Si 0.789 3.211 16 H -0.221 1.221 17 H -0.205 1.205 18 H -0.179 1.179 19 C -0.062 4.062 20 C -0.206 4.206 21 C -0.221 4.221 22 C -0.071 4.071 23 Cl -0.048 7.048 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.180 0.820 28 H 0.173 0.827 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.836 4.050 11.593 13.596 hybrid contribution 0.181 -0.479 -1.268 1.367 sum -5.655 3.571 10.325 12.302 Atomic orbital electron populations 1.20871 0.88676 1.03659 1.03691 1.20115 0.98060 0.91152 0.99846 1.21306 0.94152 0.97596 1.00449 1.21500 0.94823 0.98247 0.98329 1.21154 1.00389 0.91879 1.00545 1.19435 0.91980 0.95624 0.98857 1.20638 1.01513 0.95101 0.95935 1.20242 0.79820 0.82709 0.89825 1.90504 1.50575 1.56745 1.47572 1.42968 1.48592 1.20701 1.04635 1.19009 1.49677 0.95456 0.83834 0.90928 1.25955 0.93889 0.95318 1.02972 1.69924 1.35285 1.11327 1.33799 0.85415 0.77164 0.78954 0.79560 1.22140 1.20529 1.17919 1.22023 1.03181 0.88012 0.92977 1.23096 0.95321 1.00421 1.01717 1.23308 0.96224 1.00476 1.02141 1.20844 0.91760 0.87218 1.07266 1.98312 1.76407 1.33194 1.96874 0.89144 0.89289 0.92274 0.81997 0.82736 0.85523 0.88044 0.88247 0.93332 0.85765 0.90145 0.86389 0.85829 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.61 71.24 0.68 -1.89 16 2 C -0.09 -2.71 5.88 -19.84 -0.12 -2.83 16 3 C -0.12 -3.02 9.70 22.26 0.22 -2.81 16 4 C -0.11 -3.08 10.05 22.27 0.22 -2.86 16 5 C -0.12 -4.18 9.68 22.27 0.22 -3.96 16 6 C -0.06 -2.22 4.38 -19.84 -0.09 -2.30 16 7 C -0.09 -3.65 3.96 29.10 0.12 -3.54 16 8 C 0.49 25.05 6.96 87.66 0.61 25.66 16 9 O -0.57 -34.99 13.79 -3.09 -0.04 -35.03 16 10 N -0.45 -22.81 2.83 -613.13 -1.74 -24.55 16 11 C -0.35 -19.79 7.92 84.04 0.67 -19.13 16 12 H 0.07 3.99 7.26 -2.91 -0.02 3.97 16 13 C 0.02 1.44 4.39 84.93 0.37 1.82 16 14 N -0.87 -53.18 11.74 21.66 0.25 -52.92 16 15 Si 0.96 46.90 29.59 68.60 2.03 48.93 16 16 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.04 1.69 5.87 44.99 0.26 1.95 16 20 C -0.17 -5.82 9.80 30.60 0.30 -5.52 16 21 C -0.18 -5.95 10.36 30.59 0.32 -5.63 16 22 C -0.04 -1.60 6.31 22.32 0.14 -1.46 16 23 Cl -0.08 -2.72 25.74 -2.72 -0.07 -2.79 16 24 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 26 H 0.06 1.52 6.90 -2.39 -0.02 1.50 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 28 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 30 H 0.10 3.67 7.09 -2.38 -0.02 3.66 16 31 H 0.10 3.55 7.47 -2.39 -0.02 3.54 16 32 H 0.26 15.27 8.32 -92.71 -0.77 14.50 16 33 H 0.12 4.20 6.96 -2.39 -0.02 4.19 16 34 H 0.08 3.23 6.72 -2.38 -0.02 3.21 16 35 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -74.86 325.44 5.43 -69.43 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.08 Total: 19.43 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 3.92 Total: -22.50 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -1.48 Total: -77.47 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.04 Total: -35.03 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.07 Total: -2.79 kcal Total: -74.86 5.43 -69.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277558481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.410 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds