Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37891 * 119.93115 * 2 1 4 4 C 1.39670 * 119.85950 * 179.74258 * 3 2 1 5 5 C 1.47669 * 120.13838 * 180.24596 * 4 3 2 6 6 O 1.21601 * 119.99884 * 126.65485 * 5 4 3 7 7 N 1.34771 * 120.00380 * 306.66505 * 5 4 3 8 8 C 1.36885 * 120.00156 * 184.27288 * 7 5 4 9 9 H 1.08008 * 119.99859 * 128.26581 * 8 7 5 10 10 C 1.39036 * 120.00135 * 308.26878 * 8 7 5 11 11 N 1.31361 * 120.00185 * 182.91448 * 10 8 7 12 12 Si 1.86799 * 119.99706 * 2.91371 * 10 8 7 13 13 H 1.48505 * 109.47288 * 94.80407 * 12 10 8 14 14 H 1.48504 * 109.47068 * 214.80128 * 12 10 8 15 15 H 1.48495 * 109.47277 * 334.80224 * 12 10 8 16 16 C 1.46501 * 119.99844 * 4.26912 * 7 5 4 17 17 C 1.53008 * 117.49777 * 192.37825 * 16 7 5 18 18 C 1.52995 * 59.99954 * 252.51067 * 17 16 7 19 19 C 1.39705 * 119.72562 * 0.52786 * 4 3 2 20 20 C 1.50700 * 120.06685 * 179.72435 * 19 4 3 21 21 C 1.37851 * 119.85744 * 359.44673 * 19 4 3 22 22 C 1.38504 * 119.93359 * 179.97438 * 2 1 3 23 23 Cl 1.73608 * 119.85876 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47556 * 270.02636 * 1 2 3 25 25 H 1.09004 * 109.47021 * 30.02844 * 1 2 3 26 26 H 1.09005 * 109.47142 * 150.02616 * 1 2 3 27 27 H 1.08005 * 120.07204 * 359.96925 * 3 2 1 28 28 H 0.97004 * 120.00460 * 180.02562 * 11 10 8 29 29 H 1.08998 * 115.55130 * 338.08812 * 16 7 5 30 30 H 1.09000 * 117.49465 * 0.02562 * 17 16 7 31 31 H 1.08995 * 117.49768 * 145.02111 * 17 16 7 32 32 H 1.09001 * 117.50139 * 252.50839 * 18 17 16 33 33 H 1.09003 * 117.49972 * 107.48827 * 18 17 16 34 34 H 1.08999 * 109.47185 * 265.40720 * 20 19 4 35 35 H 1.09007 * 109.46529 * 145.41148 * 20 19 4 36 36 H 1.08991 * 109.47318 * 25.41468 * 20 19 4 37 37 H 1.08002 * 119.92612 * 180.25732 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.1950 0.0000 4 6 3.5916 1.1933 0.0054 5 6 4.3346 2.4694 0.0110 6 8 5.1806 2.6767 0.8595 7 7 4.0751 3.4044 -0.9243 8 6 4.8230 4.5498 -0.9731 9 1 5.2780 4.8585 -1.9027 10 6 4.9971 5.3158 0.1741 11 7 5.6665 6.4445 0.1150 12 14 4.2788 4.7400 1.7995 13 1 5.3134 3.9962 2.5622 14 1 3.8328 5.9166 2.5881 15 1 3.1191 3.8493 1.5404 16 6 2.9925 3.1948 -1.8889 17 6 2.9281 4.1355 -3.0939 18 6 1.9001 4.2631 -1.9680 19 6 4.2829 -0.0208 -0.0003 20 6 5.7898 -0.0316 -0.0008 21 6 3.5835 -1.2087 0.0002 22 6 2.1981 -1.2003 0.0005 23 17 1.3246 -2.7006 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8903 -0.5134 27 1 1.6550 2.1304 -0.0005 28 1 5.7883 6.9788 0.9154 29 1 2.6944 2.1578 -2.0431 30 1 3.6914 4.9100 -3.1691 31 1 2.5877 3.7174 -4.0412 32 1 0.8834 3.9290 -2.1744 33 1 1.9869 5.1218 -1.3022 34 1 6.1523 -0.1118 -1.0256 35 1 6.1472 -0.8830 0.5787 36 1 6.1599 0.8919 0.4444 37 1 4.1168 -2.1479 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280711471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = 18.103406 kcal Electronic energy + Delta-G solvation = -21871.084637 eV Core-core repulsion = 18640.445196 eV Total energy + Delta-G solvation = -3230.639441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.22457 -38.48688 -36.68540 -36.34702 -33.70196 -33.02518 -31.82703 -30.65020 -29.17170 -25.60706 -24.72030 -23.35812 -22.03319 -21.47458 -21.00492 -19.23290 -17.49106 -16.43087 -16.11687 -15.91073 -15.51143 -14.67973 -14.21441 -14.16773 -13.84209 -13.39906 -13.30006 -13.06021 -12.84239 -12.76084 -12.52816 -12.26904 -11.98801 -11.77219 -11.45666 -11.27297 -11.20611 -10.95094 -10.78721 -10.69747 -10.36347 -10.06514 -10.03479 -9.58191 -9.03351 -8.65904 -8.45367 -8.31584 -7.54619 -6.27263 -4.22712 1.05315 1.35287 2.11332 3.06213 3.44504 3.55490 3.68158 3.88998 4.22297 4.41797 4.63473 4.77521 4.81193 4.94987 5.17737 5.19694 5.39783 5.42825 5.54037 5.54857 5.57986 5.60528 5.66407 5.82533 5.93082 5.96779 6.07023 6.13539 6.18736 6.25532 6.38260 6.46730 6.64058 6.77226 6.83095 6.89902 7.68908 7.90764 8.58136 8.68283 9.24188 9.58536 10.72441 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.005986 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.656285 B = 4676.662728 C = 5160.883123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.083 4.083 4 C -0.093 4.093 5 C 0.500 3.500 6 O -0.538 6.538 7 N -0.420 5.420 8 C -0.341 4.341 9 H 0.100 0.900 10 C 0.077 3.923 11 N -0.867 5.867 12 Si 0.963 3.037 13 H -0.269 1.269 14 H -0.326 1.326 15 H -0.296 1.296 16 C 0.057 3.943 17 C -0.173 4.173 18 C -0.193 4.193 19 C -0.037 4.037 20 C -0.132 4.132 21 C -0.114 4.114 22 C -0.029 4.029 23 Cl -0.078 7.078 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.275 0.725 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 -13.652 -2.975 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.097 4.097 5 C 0.292 3.708 6 O -0.425 6.425 7 N -0.137 5.137 8 C -0.467 4.467 9 H 0.117 0.883 10 C -0.132 4.132 11 N -0.501 5.501 12 Si 0.800 3.200 13 H -0.196 1.196 14 H -0.259 1.259 15 H -0.223 1.223 16 C -0.048 4.048 17 C -0.211 4.211 18 C -0.231 4.231 19 C -0.038 4.038 20 C -0.188 4.188 21 C -0.133 4.133 22 C -0.056 4.056 23 Cl -0.049 7.049 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.084 -13.476 -2.528 16.447 hybrid contribution -0.471 -0.341 0.743 0.943 sum -9.555 -13.817 -1.786 16.894 Atomic orbital electron populations 1.20832 0.90277 1.03290 1.02787 1.19600 0.96634 0.91055 1.01765 1.21264 0.92961 0.97575 0.98358 1.20294 0.93673 0.94753 1.00943 1.18259 0.84327 0.82685 0.85567 1.90309 1.36451 1.77684 1.38011 1.43071 1.27048 1.16511 1.27022 1.18806 1.30316 0.98485 0.99120 0.88287 1.25637 0.93897 0.93287 1.00340 1.69658 1.37750 1.12137 1.30586 0.85261 0.78543 0.74360 0.81794 1.19629 1.25923 1.22326 1.21984 0.92333 0.95071 0.95457 1.23145 1.02624 1.03427 0.91911 1.23251 0.93840 1.02843 1.03174 1.19829 0.96827 0.90652 0.96524 1.21062 0.89978 1.05188 1.02588 1.20780 0.91566 0.98441 1.02500 1.20826 0.92107 0.86188 1.06474 1.98332 1.76761 1.32808 1.96968 0.90890 0.91025 0.90970 0.84517 0.91542 0.86702 0.87117 0.89456 0.89414 0.88142 0.91043 0.91614 0.88132 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.61 36.00 0.35 -0.92 16 2 C -0.09 -1.26 5.88 -104.65 -0.61 -1.88 16 3 C -0.08 -1.38 7.29 -39.17 -0.29 -1.66 16 4 C -0.09 -1.79 4.87 -104.96 -0.51 -2.30 16 5 C 0.50 11.76 4.35 -12.41 -0.05 11.71 16 6 O -0.54 -14.45 9.82 5.28 0.05 -14.39 16 7 N -0.42 -9.83 2.54 -108.85 -0.28 -10.11 16 8 C -0.34 -9.24 8.46 -15.00 -0.13 -9.37 16 9 H 0.10 2.82 7.21 -52.48 -0.38 2.44 16 10 C 0.08 2.22 5.34 -17.46 -0.09 2.13 16 11 N -0.87 -25.66 13.95 55.50 0.77 -24.89 16 12 Si 0.96 25.92 24.06 -169.99 -4.09 21.83 16 13 H -0.27 -7.65 6.61 56.52 0.37 -7.28 16 14 H -0.33 -8.66 7.11 56.52 0.40 -8.26 16 15 H -0.30 -7.72 6.28 56.52 0.36 -7.37 16 16 C 0.06 1.06 4.85 -67.93 -0.33 0.73 16 17 C -0.17 -2.94 9.86 -26.73 -0.26 -3.20 16 18 C -0.19 -3.24 10.20 -26.73 -0.27 -3.52 16 19 C -0.04 -0.62 5.91 -104.22 -0.62 -1.24 16 20 C -0.13 -2.12 9.68 36.01 0.35 -1.77 16 21 C -0.11 -1.62 9.48 -39.61 -0.38 -2.00 16 22 C -0.03 -0.40 6.32 -39.37 -0.25 -0.65 16 23 Cl -0.08 -0.90 27.27 -51.86 -1.41 -2.32 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.07 0.72 6.89 -51.93 -0.36 0.36 16 27 H 0.14 2.26 7.29 -52.48 -0.38 1.88 16 28 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.12 1.91 5.99 -51.93 -0.31 1.60 16 30 H 0.11 2.14 6.65 -51.93 -0.35 1.80 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.87 8.11 -51.92 -0.42 0.45 16 36 H 0.10 1.98 5.52 -51.93 -0.29 1.69 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 312.55 15.07 4.71 4.71 Total: -1.00 -30.99 312.55 -7.99 -38.98 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.65 Total: 0.11 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -3.10 Total: -13.93 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.50 Total: -35.00 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.05 Total: -14.39 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.09 Total: 21.83 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.41 Total: -2.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.99 -7.99 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280711471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.082 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds