Wall clock time and date at job start Tue Mar 31 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37891 * 119.93115 * 2 1 4 4 C 1.39670 * 119.85950 * 179.74258 * 3 2 1 5 5 C 1.47669 * 120.13838 * 180.24596 * 4 3 2 6 6 O 1.21601 * 119.99884 * 126.65485 * 5 4 3 7 7 N 1.34771 * 120.00380 * 306.66505 * 5 4 3 8 8 C 1.36885 * 120.00156 * 184.27288 * 7 5 4 9 9 H 1.08008 * 119.99859 * 128.26581 * 8 7 5 10 10 C 1.39036 * 120.00135 * 308.26878 * 8 7 5 11 11 N 1.31361 * 120.00185 * 182.91448 * 10 8 7 12 12 Si 1.86799 * 119.99706 * 2.91371 * 10 8 7 13 13 H 1.48505 * 109.47288 * 94.80407 * 12 10 8 14 14 H 1.48504 * 109.47068 * 214.80128 * 12 10 8 15 15 H 1.48495 * 109.47277 * 334.80224 * 12 10 8 16 16 C 1.46501 * 119.99844 * 4.26912 * 7 5 4 17 17 C 1.53008 * 117.49777 * 192.37825 * 16 7 5 18 18 C 1.52995 * 59.99954 * 252.51067 * 17 16 7 19 19 C 1.39705 * 119.72562 * 0.52786 * 4 3 2 20 20 C 1.50700 * 120.06685 * 179.72435 * 19 4 3 21 21 C 1.37851 * 119.85744 * 359.44673 * 19 4 3 22 22 C 1.38504 * 119.93359 * 179.97438 * 2 1 3 23 23 Cl 1.73608 * 119.85876 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.47556 * 270.02636 * 1 2 3 25 25 H 1.09004 * 109.47021 * 30.02844 * 1 2 3 26 26 H 1.09005 * 109.47142 * 150.02616 * 1 2 3 27 27 H 1.08005 * 120.07204 * 359.96925 * 3 2 1 28 28 H 0.97004 * 120.00460 * 180.02562 * 11 10 8 29 29 H 1.08998 * 115.55130 * 338.08812 * 16 7 5 30 30 H 1.09000 * 117.49465 * 0.02562 * 17 16 7 31 31 H 1.08995 * 117.49768 * 145.02111 * 17 16 7 32 32 H 1.09001 * 117.50139 * 252.50839 * 18 17 16 33 33 H 1.09003 * 117.49972 * 107.48827 * 18 17 16 34 34 H 1.08999 * 109.47185 * 265.40720 * 20 19 4 35 35 H 1.09007 * 109.46529 * 145.41148 * 20 19 4 36 36 H 1.08991 * 109.47318 * 25.41468 * 20 19 4 37 37 H 1.08002 * 119.92612 * 180.25732 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.1950 0.0000 4 6 3.5916 1.1933 0.0054 5 6 4.3346 2.4694 0.0110 6 8 5.1806 2.6767 0.8595 7 7 4.0751 3.4044 -0.9243 8 6 4.8230 4.5498 -0.9731 9 1 5.2780 4.8585 -1.9027 10 6 4.9971 5.3158 0.1741 11 7 5.6665 6.4445 0.1150 12 14 4.2788 4.7400 1.7995 13 1 5.3134 3.9962 2.5622 14 1 3.8328 5.9166 2.5881 15 1 3.1191 3.8493 1.5404 16 6 2.9925 3.1948 -1.8889 17 6 2.9281 4.1355 -3.0939 18 6 1.9001 4.2631 -1.9680 19 6 4.2829 -0.0208 -0.0003 20 6 5.7898 -0.0316 -0.0008 21 6 3.5835 -1.2087 0.0002 22 6 2.1981 -1.2003 0.0005 23 17 1.3246 -2.7006 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3634 -0.8903 -0.5134 27 1 1.6550 2.1304 -0.0005 28 1 5.7883 6.9788 0.9154 29 1 2.6944 2.1578 -2.0431 30 1 3.6914 4.9100 -3.1691 31 1 2.5877 3.7174 -4.0412 32 1 0.8834 3.9290 -2.1744 33 1 1.9869 5.1218 -1.3022 34 1 6.1523 -0.1118 -1.0256 35 1 6.1472 -0.8830 0.5787 36 1 6.1599 0.8919 0.4444 37 1 4.1168 -2.1479 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280711471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:30 Heat of formation + Delta-G solvation = 0.127790 kcal Electronic energy + Delta-G solvation = -21871.864118 eV Core-core repulsion = 18640.445196 eV Total energy + Delta-G solvation = -3231.418922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75677 -39.91752 -38.24809 -37.46929 -35.09890 -34.73702 -33.65773 -32.07316 -30.27141 -27.41269 -25.95435 -24.76994 -23.45545 -22.88652 -22.46017 -20.91826 -19.22751 -18.06799 -17.50460 -17.28855 -17.13879 -16.30370 -15.67883 -15.52866 -15.34315 -15.10418 -14.82402 -14.64895 -14.21398 -13.95301 -13.78235 -13.61915 -13.19414 -13.08215 -12.87759 -12.77694 -12.47754 -12.40729 -12.27671 -12.11523 -12.02045 -11.74016 -11.59119 -11.24463 -11.06794 -10.45209 -9.86807 -9.52075 -9.40582 -8.46641 -6.40282 -0.21137 0.18077 1.04661 1.14766 1.23638 1.44350 1.84396 2.30478 2.42506 2.62471 2.87002 3.16778 3.59682 3.67842 3.73372 4.00038 4.01974 4.11956 4.21515 4.26602 4.39450 4.55973 4.68300 4.72278 4.78690 4.80937 4.85676 4.89988 5.03386 5.08473 5.20080 5.26809 5.29339 5.43988 5.48864 5.60317 5.68432 5.82408 6.60426 6.73659 7.15782 7.66042 8.56225 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.005986 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.656285 B = 4676.662728 C = 5160.883123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.084 4.084 4 C -0.124 4.124 5 C 0.501 3.499 6 O -0.581 6.581 7 N -0.436 5.436 8 C -0.329 4.329 9 H 0.076 0.924 10 C 0.037 3.963 11 N -0.908 5.908 12 Si 1.008 2.992 13 H -0.299 1.299 14 H -0.325 1.325 15 H -0.286 1.286 16 C 0.039 3.961 17 C -0.167 4.167 18 C -0.178 4.178 19 C -0.047 4.047 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.025 4.025 23 Cl -0.050 7.050 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.275 0.725 29 H 0.142 0.858 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 -17.107 -3.880 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.103 4.103 4 C -0.128 4.128 5 C 0.294 3.706 6 O -0.470 6.470 7 N -0.153 5.153 8 C -0.456 4.456 9 H 0.093 0.907 10 C -0.167 4.167 11 N -0.545 5.545 12 Si 0.846 3.154 13 H -0.229 1.229 14 H -0.258 1.258 15 H -0.213 1.213 16 C -0.065 4.065 17 C -0.204 4.204 18 C -0.217 4.217 19 C -0.048 4.048 20 C -0.186 4.186 21 C -0.123 4.123 22 C -0.051 4.051 23 Cl -0.021 7.021 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.154 0.846 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.095 0.905 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.289 -16.940 -3.463 21.212 hybrid contribution 0.473 0.487 0.946 1.164 sum -11.816 -16.453 -2.517 20.412 Atomic orbital electron populations 1.20941 0.87708 1.04734 1.03839 1.19872 0.98324 0.90075 0.99967 1.21240 0.91713 0.98738 0.98638 1.20013 0.94728 0.92961 1.05054 1.18965 0.83623 0.84020 0.84024 1.90254 1.38346 1.78721 1.39675 1.43245 1.28238 1.15638 1.28184 1.18619 1.30067 0.99246 0.97680 0.90683 1.26121 0.94798 0.93644 1.02141 1.69713 1.40400 1.13408 1.30987 0.84529 0.77559 0.73576 0.79715 1.22901 1.25751 1.21307 1.22258 0.91893 0.97031 0.95290 1.23185 1.01845 1.01962 0.93441 1.23311 0.95730 1.00697 1.01922 1.19931 0.97019 0.90871 0.96991 1.21009 0.90102 1.04145 1.03343 1.20991 0.91956 0.98356 1.00992 1.21004 0.92261 0.87352 1.04526 1.98352 1.76078 1.30935 1.96689 0.89898 0.89585 0.89630 0.84624 0.91528 0.84024 0.90482 0.85276 0.84765 0.91235 0.90025 0.88737 0.92389 0.82008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.61 71.23 0.68 -1.29 16 2 C -0.08 -1.97 5.88 -19.89 -0.12 -2.09 16 3 C -0.08 -2.59 7.29 22.53 0.16 -2.43 16 4 C -0.12 -4.64 4.87 -20.09 -0.10 -4.74 16 5 C 0.50 23.97 4.35 86.74 0.38 24.35 16 6 O -0.58 -32.50 9.82 -4.03 -0.04 -32.54 16 7 N -0.44 -20.80 2.54 -616.54 -1.56 -22.37 16 8 C -0.33 -18.61 8.46 84.10 0.71 -17.90 16 9 H 0.08 4.54 7.21 -2.91 -0.02 4.52 16 10 C 0.04 2.23 5.34 84.95 0.45 2.68 16 11 N -0.91 -56.49 13.95 21.68 0.30 -56.19 16 12 Si 1.01 55.82 24.06 68.60 1.65 57.47 16 13 H -0.30 -17.88 6.61 99.48 0.66 -17.22 16 14 H -0.32 -17.44 7.11 99.48 0.71 -16.73 16 15 H -0.29 -15.04 6.28 99.48 0.62 -14.42 16 16 C 0.04 1.41 4.85 44.99 0.22 1.63 16 17 C -0.17 -5.41 9.86 30.60 0.30 -5.10 16 18 C -0.18 -5.64 10.20 30.59 0.31 -5.33 16 19 C -0.05 -1.50 5.91 -19.60 -0.12 -1.61 16 20 C -0.13 -4.08 9.68 71.24 0.69 -3.39 16 21 C -0.10 -2.58 9.48 22.25 0.21 -2.37 16 22 C -0.02 -0.57 6.32 22.41 0.14 -0.43 16 23 Cl -0.05 -0.92 27.27 -2.72 -0.07 -0.99 16 24 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 25 H 0.09 1.26 8.08 -2.38 -0.02 1.24 16 26 H 0.08 1.25 6.89 -2.38 -0.02 1.24 16 27 H 0.14 4.14 7.29 -2.91 -0.02 4.12 16 28 H 0.28 16.23 8.31 -92.71 -0.77 15.46 16 29 H 0.14 4.32 5.99 -2.39 -0.01 4.30 16 30 H 0.08 3.05 6.65 -2.39 -0.02 3.04 16 31 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.34 8.11 -2.38 -0.02 2.32 16 36 H 0.06 2.36 5.52 -2.39 -0.01 2.35 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -72.28 312.55 5.17 -67.11 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.96 Total: 5.53 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.93 Total: -18.03 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -1.26 Total: -78.55 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.04 Total: -32.54 kcal Atomic # 14 Polarization: 55.82 SS G_CDS: 1.65 Total: 57.47 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.07 Total: -0.99 kcal Total: -72.28 5.17 -67.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280711471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.239 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds