Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47222 * 286.94457 * 3 2 1 5 5 C 1.37088 * 120.00076 * 263.73664 * 4 3 2 6 6 H 1.08007 * 120.00025 * 142.46549 * 5 4 3 7 7 C 1.38943 * 120.00063 * 322.46064 * 5 4 3 8 8 N 1.31419 * 120.00450 * 157.51612 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 337.51681 * 7 5 4 10 10 H 1.48505 * 109.47374 * 95.70427 * 9 7 5 11 11 H 1.48506 * 109.47591 * 215.70359 * 9 7 5 12 12 H 1.48503 * 109.47188 * 335.70598 * 9 7 5 13 13 C 1.34781 * 119.99789 * 83.73320 * 4 3 2 14 14 O 1.21292 * 120.00177 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00246 * 0.02562 * 13 4 3 16 16 C 1.52992 * 109.47395 * 179.97438 * 15 13 4 17 17 C 1.50695 * 109.47333 * 179.97438 * 16 15 13 18 18 C 1.38250 * 120.00220 * 264.97837 * 17 16 15 19 19 C 1.38219 * 120.07422 * 180.02562 * 18 17 16 20 20 C 1.38260 * 120.06601 * 359.97438 * 19 18 17 21 21 C 1.38362 * 119.99871 * 0.02562 * 20 19 18 22 22 F 1.35108 * 120.02993 * 179.97438 * 21 20 19 23 23 C 1.38375 * 119.99896 * 84.99895 * 17 16 15 24 24 F 1.35095 * 120.03533 * 0.25733 * 23 17 16 25 25 H 4.40640 * 5.51445 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46692 * 166.94508 * 3 2 1 27 27 H 1.09001 * 109.46754 * 46.94367 * 3 2 1 28 28 H 0.96994 * 120.00318 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46653 * 59.99635 * 15 13 4 30 30 H 1.09001 * 109.46560 * 300.00265 * 15 13 4 31 31 H 1.09002 * 109.47099 * 59.99545 * 16 15 13 32 32 H 1.09001 * 109.47342 * 300.00256 * 16 15 13 33 33 H 1.07998 * 119.96565 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.96547 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99264 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4017 1.3212 5 6 3.4848 0.5516 2.2421 6 1 3.2649 0.3983 3.2883 7 6 4.1227 1.7149 1.8294 8 7 4.0694 2.7943 2.5772 9 14 5.0561 1.7448 0.2116 10 1 4.1782 2.2869 -0.8565 11 1 6.2579 2.6063 0.3492 12 1 5.4742 0.3650 -0.1442 13 6 3.2397 -1.7091 1.6314 14 8 3.6446 -2.0423 2.7252 15 6 2.8552 -2.7571 0.6190 16 6 3.0680 -4.1482 1.2190 17 6 2.6830 -5.1962 0.2068 18 6 1.4136 -5.7436 0.2273 19 6 1.0590 -6.7052 -0.7001 20 6 1.9729 -7.1213 -1.6505 21 6 3.2441 -6.5753 -1.6736 22 9 4.1378 -6.9818 -2.6018 23 6 3.6000 -5.6108 -0.7429 24 9 4.8424 -5.0804 -0.7600 25 1 -1.0499 0.0001 0.0002 26 1 3.0089 1.0019 -0.2321 27 1 3.0096 -0.7008 -0.7509 28 1 4.5144 3.6065 2.2890 29 1 3.4748 -2.6469 -0.2711 30 1 1.8063 -2.6339 0.3491 31 1 2.4488 -4.2586 2.1092 32 1 4.1170 -4.2711 1.4886 33 1 0.6983 -5.4196 0.9686 34 1 0.0672 -7.1320 -0.6822 35 1 1.6945 -7.8725 -2.3748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281467233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -35.154283 kcal Electronic energy + Delta-G solvation = -22693.442852 eV Core-core repulsion = 18908.697304 eV Total energy + Delta-G solvation = -3784.745548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.54032 -48.61020 -39.44753 -38.75707 -35.50066 -33.89362 -32.67104 -31.62635 -30.47326 -29.78524 -26.80493 -25.86842 -23.80077 -22.97593 -21.52505 -18.96184 -18.47924 -17.99231 -17.40307 -17.07851 -16.74200 -16.39873 -16.03633 -15.65896 -15.03510 -15.00851 -14.95495 -14.44734 -13.97315 -13.75465 -13.39504 -13.06447 -13.05818 -12.77182 -12.52967 -12.31293 -12.09426 -11.94324 -11.64345 -11.17510 -10.98209 -10.89131 -10.71449 -10.27628 -9.81046 -9.59962 -9.18052 -9.08948 -8.90714 -8.56259 -7.92042 -6.44327 -4.02325 0.75323 0.79009 2.96946 3.11359 3.15526 3.18005 3.21869 3.31017 3.61921 3.66196 4.09949 4.21406 4.28763 4.50407 4.57092 4.74866 4.86495 4.87842 5.04033 5.29891 5.33225 5.45602 5.58124 5.63177 5.71955 5.77910 5.85834 5.91448 6.01065 6.04282 6.29835 6.32724 6.37556 6.59487 7.47060 8.04406 8.22410 8.42131 8.89279 9.24277 9.67078 10.67656 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.004332 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.876489 B = 6461.883940 C = 6810.603456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C 0.191 3.809 4 N -0.463 5.463 5 C -0.318 4.318 6 H 0.107 0.893 7 C 0.062 3.938 8 N -0.859 5.859 9 Si 0.864 3.136 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.473 3.527 14 O -0.557 6.557 15 C -0.134 4.134 16 C -0.065 4.065 17 C -0.079 4.079 18 C -0.098 4.098 19 C -0.099 4.099 20 C -0.136 4.136 21 C 0.066 3.934 22 F -0.132 7.132 23 C 0.069 3.931 24 F -0.124 7.124 25 H 0.213 0.787 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.275 0.725 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 -16.316 -10.736 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.176 4.176 3 C 0.068 3.932 4 N -0.184 5.184 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.144 4.144 8 N -0.494 5.494 9 Si 0.690 3.310 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.183 1.183 13 C 0.262 3.738 14 O -0.438 6.438 15 C -0.174 4.174 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.155 4.155 21 C 0.046 3.954 22 F -0.110 7.110 23 C 0.048 3.952 24 F -0.102 7.102 25 H 0.230 0.770 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.731 -16.256 -10.146 20.310 hybrid contribution 0.678 0.362 -1.189 1.415 sum -6.053 -15.894 -11.335 20.439 Atomic orbital electron populations 1.24723 0.95644 1.02270 1.01010 1.23773 0.94870 0.99266 0.99709 1.18928 0.84021 1.02118 0.88127 1.43683 1.57039 1.05089 1.12610 1.19029 1.37851 0.96206 0.91422 0.87582 1.25342 0.96193 0.94903 0.97948 1.69760 1.40068 1.00534 1.39083 0.87146 0.80738 0.79411 0.83679 1.19979 1.20799 1.18320 1.20176 0.81619 0.83043 0.88969 1.90567 1.48750 1.80487 1.24005 1.21645 1.02959 0.93544 0.99280 1.20331 1.04186 0.90174 0.95590 1.20116 0.93321 0.98467 0.96109 1.21127 0.95102 0.96100 0.99298 1.21074 0.99648 0.96907 0.94109 1.21042 0.91337 1.01858 1.01271 1.17708 0.89063 0.98352 0.90321 1.91524 1.66972 1.89259 1.63251 1.17612 0.82045 0.97178 0.98331 1.91546 1.38068 1.84782 1.95801 0.76963 0.88507 0.89627 0.91477 0.89978 0.89650 0.89132 0.89444 0.84062 0.84294 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.53 19.25 29.55 0.57 -2.96 16 2 C -0.17 -3.31 12.91 -37.12 -0.48 -3.79 16 3 C 0.19 3.90 4.27 -6.83 -0.03 3.87 16 4 N -0.46 -11.20 2.15 -117.93 -0.25 -11.45 16 5 C -0.32 -9.00 9.36 -14.94 -0.14 -9.14 16 6 H 0.11 3.37 7.91 -52.48 -0.42 2.96 16 7 C 0.06 1.72 5.26 -17.47 -0.09 1.63 16 8 N -0.86 -24.73 13.96 55.50 0.77 -23.95 16 9 Si 0.86 20.04 25.05 -169.99 -4.26 15.78 16 10 H -0.27 -5.87 6.69 56.52 0.38 -5.49 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.47 10.82 7.56 -10.98 -0.08 10.74 16 14 O -0.56 -14.67 15.85 5.55 0.09 -14.58 16 15 C -0.13 -2.26 4.29 -27.88 -0.12 -2.38 16 16 C -0.07 -0.98 4.41 -27.89 -0.12 -1.10 16 17 C -0.08 -0.99 5.14 -104.57 -0.54 -1.52 16 18 C -0.10 -0.94 9.68 -39.58 -0.38 -1.33 16 19 C -0.10 -0.78 10.04 -39.58 -0.40 -1.18 16 20 C -0.14 -1.20 10.02 -39.53 -0.40 -1.60 16 21 C 0.07 0.78 7.31 -39.37 -0.29 0.49 16 22 F -0.13 -1.68 17.18 2.25 0.04 -1.64 16 23 C 0.07 0.92 7.25 -39.37 -0.29 0.63 16 24 F -0.12 -1.91 16.48 2.25 0.04 -1.87 16 25 H 0.21 2.48 7.80 -54.10 -0.42 2.06 16 26 H 0.10 2.08 3.62 -51.93 -0.19 1.89 16 27 H 0.09 1.46 6.70 -51.93 -0.35 1.11 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.09 1.30 7.48 -51.93 -0.39 0.91 16 31 H 0.09 1.33 8.01 -51.93 -0.42 0.91 16 32 H 0.09 1.45 7.75 -51.93 -0.40 1.04 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -32.56 317.49 -4.96 -37.52 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.39 Total: 3.06 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.78 Total: -7.65 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.52 Total: -35.41 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.26 Total: 15.78 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.56 -4.96 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281467233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.370 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds