Wall clock time and date at job start Tue Mar 31 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47222 * 286.94457 * 3 2 1 5 5 C 1.37088 * 120.00076 * 263.73664 * 4 3 2 6 6 H 1.08007 * 120.00025 * 142.46549 * 5 4 3 7 7 C 1.38943 * 120.00063 * 322.46064 * 5 4 3 8 8 N 1.31419 * 120.00450 * 157.51612 * 7 5 4 9 9 Si 1.86797 * 120.00093 * 337.51681 * 7 5 4 10 10 H 1.48505 * 109.47374 * 95.70427 * 9 7 5 11 11 H 1.48506 * 109.47591 * 215.70359 * 9 7 5 12 12 H 1.48503 * 109.47188 * 335.70598 * 9 7 5 13 13 C 1.34781 * 119.99789 * 83.73320 * 4 3 2 14 14 O 1.21292 * 120.00177 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00246 * 0.02562 * 13 4 3 16 16 C 1.52992 * 109.47395 * 179.97438 * 15 13 4 17 17 C 1.50695 * 109.47333 * 179.97438 * 16 15 13 18 18 C 1.38250 * 120.00220 * 264.97837 * 17 16 15 19 19 C 1.38219 * 120.07422 * 180.02562 * 18 17 16 20 20 C 1.38260 * 120.06601 * 359.97438 * 19 18 17 21 21 C 1.38362 * 119.99871 * 0.02562 * 20 19 18 22 22 F 1.35108 * 120.02993 * 179.97438 * 21 20 19 23 23 C 1.38375 * 119.99896 * 84.99895 * 17 16 15 24 24 F 1.35095 * 120.03533 * 0.25733 * 23 17 16 25 25 H 4.40640 * 5.51445 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46692 * 166.94508 * 3 2 1 27 27 H 1.09001 * 109.46754 * 46.94367 * 3 2 1 28 28 H 0.96994 * 120.00318 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46653 * 59.99635 * 15 13 4 30 30 H 1.09001 * 109.46560 * 300.00265 * 15 13 4 31 31 H 1.09002 * 109.47099 * 59.99545 * 16 15 13 32 32 H 1.09001 * 109.47342 * 300.00256 * 16 15 13 33 33 H 1.07998 * 119.96565 * 0.02562 * 18 17 16 34 34 H 1.07994 * 119.96547 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99264 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4017 1.3212 5 6 3.4848 0.5516 2.2421 6 1 3.2649 0.3983 3.2883 7 6 4.1227 1.7149 1.8294 8 7 4.0694 2.7943 2.5772 9 14 5.0561 1.7448 0.2116 10 1 4.1782 2.2869 -0.8565 11 1 6.2579 2.6063 0.3492 12 1 5.4742 0.3650 -0.1442 13 6 3.2397 -1.7091 1.6314 14 8 3.6446 -2.0423 2.7252 15 6 2.8552 -2.7571 0.6190 16 6 3.0680 -4.1482 1.2190 17 6 2.6830 -5.1962 0.2068 18 6 1.4136 -5.7436 0.2273 19 6 1.0590 -6.7052 -0.7001 20 6 1.9729 -7.1213 -1.6505 21 6 3.2441 -6.5753 -1.6736 22 9 4.1378 -6.9818 -2.6018 23 6 3.6000 -5.6108 -0.7429 24 9 4.8424 -5.0804 -0.7600 25 1 -1.0499 0.0001 0.0002 26 1 3.0089 1.0019 -0.2321 27 1 3.0096 -0.7008 -0.7509 28 1 4.5144 3.6065 2.2890 29 1 3.4748 -2.6469 -0.2711 30 1 1.8063 -2.6339 0.3491 31 1 2.4488 -4.2586 2.1092 32 1 4.1170 -4.2711 1.4886 33 1 0.6983 -5.4196 0.9686 34 1 0.0672 -7.1320 -0.6822 35 1 1.6945 -7.8725 -2.3748 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281467233.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:01 Heat of formation + Delta-G solvation = -55.009581 kcal Electronic energy + Delta-G solvation = -22694.303843 eV Core-core repulsion = 18908.697304 eV Total energy + Delta-G solvation = -3785.606538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.49645 -49.58705 -40.89608 -39.92262 -37.28595 -35.12857 -34.45961 -33.32072 -31.25825 -30.93077 -28.44566 -27.45453 -25.27142 -23.78160 -22.57752 -20.65568 -20.17618 -18.92863 -18.56169 -18.29039 -18.06121 -17.59894 -17.45443 -17.26653 -16.49969 -16.03842 -15.73154 -15.67180 -15.46267 -15.09307 -14.91030 -14.63777 -14.36471 -14.16339 -13.96334 -13.59477 -13.48197 -12.94010 -12.83595 -12.76307 -12.58491 -12.11485 -12.08047 -12.03020 -11.38149 -11.18923 -11.02949 -10.49793 -9.91899 -9.85653 -9.73281 -8.56278 -6.19872 -0.04840 -0.00202 1.14173 1.27728 1.39885 1.67168 1.88327 1.93289 2.13341 2.39926 2.76359 2.85123 2.89583 3.34360 3.51267 3.57544 3.76809 3.87807 3.97107 4.08156 4.19698 4.23719 4.24903 4.36028 4.60788 4.68011 4.83426 4.96561 5.03629 5.10153 5.12034 5.23414 5.36573 5.47066 5.80504 5.98754 6.45745 6.72639 6.86573 7.20326 7.76222 8.60920 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.004332 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.876489 B = 6461.883940 C = 6810.603456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.238 4.238 3 C 0.190 3.810 4 N -0.475 5.475 5 C -0.337 4.337 6 H 0.046 0.954 7 C 0.017 3.983 8 N -0.905 5.905 9 Si 0.933 3.067 10 H -0.238 1.238 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.465 3.535 14 O -0.606 6.606 15 C -0.117 4.117 16 C -0.058 4.058 17 C -0.091 4.091 18 C -0.092 4.092 19 C -0.080 4.080 20 C -0.121 4.121 21 C 0.048 3.952 22 F -0.143 7.143 23 C 0.039 3.961 24 F -0.147 7.147 25 H 0.258 0.742 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.281 0.719 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -18.166 -13.960 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.239 4.239 3 C 0.069 3.931 4 N -0.196 5.196 5 C -0.465 4.465 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.542 5.542 9 Si 0.755 3.245 10 H -0.163 1.163 11 H -0.208 1.208 12 H -0.177 1.177 13 C 0.255 3.745 14 O -0.490 6.490 15 C -0.157 4.157 16 C -0.096 4.096 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.098 4.098 20 C -0.140 4.140 21 C 0.028 3.972 22 F -0.121 7.121 23 C 0.019 3.981 24 F -0.125 7.125 25 H 0.274 0.726 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.180 0.820 34 H 0.200 0.800 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.492 -18.107 -13.400 24.445 hybrid contribution 1.361 0.864 -0.093 1.615 sum -8.132 -17.243 -13.493 23.356 Atomic orbital electron populations 1.25731 0.96444 0.99000 0.97560 1.23696 0.95159 1.02308 1.02776 1.18943 0.85651 1.02203 0.86333 1.43802 1.57527 1.04840 1.13426 1.18629 1.39675 0.97983 0.90213 0.93586 1.26099 0.96250 0.93806 1.02441 1.69866 1.41168 1.01406 1.41783 0.86056 0.79226 0.79764 0.79451 1.16264 1.20766 1.17741 1.21258 0.80113 0.83716 0.89364 1.90530 1.50591 1.81369 1.26471 1.21576 1.04415 0.92234 0.97493 1.20152 1.02692 0.90238 0.96529 1.19881 0.94709 0.98890 0.95763 1.21440 0.93913 0.95789 0.99880 1.21546 1.01012 0.95137 0.92104 1.21485 0.89723 1.01244 1.01513 1.18004 0.90189 0.98783 0.90223 1.91492 1.67675 1.89373 1.63600 1.17957 0.81582 0.98666 0.99869 1.91476 1.39622 1.85366 1.96083 0.72589 0.89819 0.86349 0.90885 0.88745 0.87092 0.89184 0.92142 0.82027 0.79998 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 19.25 74.32 1.43 -3.40 16 2 C -0.24 -8.51 12.91 31.13 0.40 -8.11 16 3 C 0.19 7.56 4.27 84.57 0.36 7.92 16 4 N -0.47 -23.52 2.15 -645.41 -1.39 -24.91 16 5 C -0.34 -20.18 9.36 84.04 0.79 -19.40 16 6 H 0.05 3.22 7.91 -2.91 -0.02 3.19 16 7 C 0.02 0.96 5.26 84.92 0.45 1.41 16 8 N -0.91 -54.31 13.96 21.66 0.30 -54.01 16 9 Si 0.93 41.72 25.05 68.60 1.72 43.44 16 10 H -0.24 -9.29 6.69 99.48 0.67 -8.63 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.25 -11.02 7.11 99.48 0.71 -10.32 16 13 C 0.46 21.89 7.56 87.66 0.66 22.55 16 14 O -0.61 -33.82 15.85 -3.07 -0.05 -33.87 16 15 C -0.12 -3.89 4.29 29.85 0.13 -3.76 16 16 C -0.06 -1.76 4.41 29.84 0.13 -1.63 16 17 C -0.09 -2.14 5.14 -19.83 -0.10 -2.25 16 18 C -0.09 -1.43 9.68 22.27 0.22 -1.21 16 19 C -0.08 -0.84 10.04 22.27 0.22 -0.61 16 20 C -0.12 -1.62 10.02 22.30 0.22 -1.40 16 21 C 0.05 1.05 7.31 22.41 0.16 1.21 16 22 F -0.14 -3.50 17.18 44.97 0.77 -2.73 16 23 C 0.04 1.02 7.25 22.41 0.16 1.19 16 24 F -0.15 -4.67 16.48 44.97 0.74 -3.93 16 25 H 0.26 4.53 7.80 -4.42 -0.03 4.50 16 26 H 0.08 3.48 3.62 -2.39 -0.01 3.48 16 27 H 0.12 3.78 6.70 -2.39 -0.02 3.76 16 28 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.09 2.91 7.42 -2.38 -0.02 2.90 16 30 H 0.11 3.12 7.48 -2.39 -0.02 3.10 16 31 H 0.09 2.65 8.01 -2.39 -0.02 2.64 16 32 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -78.89 317.49 8.42 -70.47 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.08 Total: 13.03 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.24 Total: -7.49 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.09 Total: -78.92 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.05 Total: -33.87 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.51 Total: -6.66 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.72 Total: 43.44 kcal Total: -78.89 8.42 -70.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281467233.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.462 kcal (2) G-P(sol) polarization free energy of solvation -78.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds