Wall clock time and date at job start Tue Mar 31 2020 06:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46793 * 145.46632 * 3 2 1 5 5 C 1.37092 * 120.00232 * 274.45071 * 4 3 2 6 6 H 1.07999 * 120.00358 * 133.73191 * 5 4 3 7 7 C 1.38956 * 120.00127 * 313.74099 * 5 4 3 8 8 N 1.31413 * 119.99803 * 3.60652 * 7 5 4 9 9 Si 1.86794 * 120.00006 * 183.61127 * 7 5 4 10 10 H 1.48499 * 109.47416 * 89.99585 * 9 7 5 11 11 H 1.48504 * 109.47016 * 209.99642 * 9 7 5 12 12 H 1.48497 * 109.47341 * 329.99401 * 9 7 5 13 13 C 1.34783 * 119.99847 * 94.45062 * 4 3 2 14 14 O 1.21295 * 119.99726 * 5.22103 * 13 4 3 15 15 C 1.50693 * 119.99809 * 185.21180 * 13 4 3 16 16 F 1.39906 * 109.46795 * 80.77733 * 15 13 4 17 17 F 1.39896 * 109.47594 * 320.77930 * 15 13 4 18 18 C 1.50695 * 109.47136 * 200.77404 * 15 13 4 19 19 C 1.38240 * 119.99969 * 90.00427 * 18 15 13 20 20 C 1.38236 * 120.00221 * 179.72430 * 19 18 15 21 21 C 1.38234 * 119.99645 * 0.25550 * 20 19 18 22 22 C 1.50702 * 119.99665 * 179.97438 * 21 20 19 23 23 C 1.38235 * 120.00412 * 0.02562 * 21 20 19 24 24 C 1.38231 * 120.00066 * 359.94995 * 23 21 20 25 25 H 4.40637 * 5.51411 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47354 * 25.46787 * 3 2 1 27 27 H 1.09002 * 109.47132 * 265.46050 * 3 2 1 28 28 H 0.96992 * 119.99897 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.99738 * 0.02562 * 19 18 15 30 30 H 1.07991 * 119.99858 * 180.27727 * 20 19 18 31 31 H 1.08994 * 109.47143 * 90.00533 * 22 21 20 32 32 H 1.09007 * 109.47044 * 209.99849 * 22 21 20 33 33 H 1.08999 * 109.47194 * 329.99793 * 22 21 20 34 34 H 1.08002 * 120.00075 * 179.97438 * 23 21 20 35 35 H 1.08001 * 120.00344 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1388 -0.7830 5 6 3.2754 1.0256 -2.1419 6 1 2.9059 1.8062 -2.7903 7 6 3.8944 -0.0937 -2.6851 8 7 4.2802 -1.0760 -1.9021 9 14 4.1779 -0.2019 -4.5282 10 1 5.5013 0.3841 -4.8608 11 1 4.1463 -1.6251 -4.9512 12 1 3.1116 0.5492 -5.2381 13 6 3.4433 2.2972 -0.1674 14 8 3.4089 2.3687 1.0429 15 6 3.8321 3.5033 -0.9829 16 9 2.6791 4.1284 -1.4699 17 9 4.6337 3.1015 -2.0567 18 6 4.5994 4.4689 -0.1170 19 6 5.9756 4.3738 -0.0273 20 6 6.6800 5.2631 0.7625 21 6 6.0077 6.2443 1.4668 22 6 6.7755 7.2135 2.3283 23 6 4.6310 6.3359 1.3818 24 6 3.9266 5.4469 0.5916 25 1 -1.0501 -0.0002 0.0004 26 1 3.0098 -0.9270 -0.4419 27 1 3.0093 0.0822 1.0245 28 1 4.7126 -1.8571 -2.2812 29 1 6.5009 3.6076 -0.5782 30 1 7.7555 5.1915 0.8289 31 1 7.0532 8.0851 1.7357 32 1 6.1527 7.5273 3.1661 33 1 7.6759 6.7292 2.7063 34 1 4.1057 7.1023 1.9324 35 1 2.8511 5.5187 0.5248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281566403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:50 Heat of formation + Delta-G solvation = -55.445670 kcal Electronic energy + Delta-G solvation = -23619.309246 eV Core-core repulsion = 19833.683798 eV Total energy + Delta-G solvation = -3785.625448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.15535 -48.12474 -40.76539 -40.10349 -37.28043 -34.37400 -34.18385 -33.31873 -31.96297 -30.05120 -28.61071 -27.10772 -25.53749 -23.75298 -22.44965 -21.44532 -20.30865 -19.32296 -18.73209 -18.58415 -17.73169 -16.92678 -16.73402 -16.23545 -16.02789 -15.73456 -15.57350 -15.43887 -14.88475 -14.67121 -14.59155 -14.34037 -14.23937 -14.13041 -13.96704 -13.49230 -13.24634 -13.09070 -13.01586 -12.91097 -12.66947 -12.20135 -12.11542 -11.98945 -11.54693 -11.29467 -11.00678 -10.61817 -9.94448 -9.78258 -9.68669 -8.39099 -6.36822 0.11950 0.38993 1.21292 1.40876 1.47286 1.52739 1.69442 1.97149 2.25204 2.35245 2.59518 2.90174 2.93768 3.28055 3.57532 3.70653 3.89917 3.99976 4.00289 4.02638 4.45014 4.50288 4.58887 4.76575 4.78433 4.90774 5.07523 5.10770 5.12435 5.22412 5.34330 5.37627 5.44191 5.58352 5.71535 5.97860 6.19011 6.72886 6.86269 7.09129 7.54622 8.58899 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.005721 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.096799 B = 4892.698863 C = 5641.442314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.224 4.224 3 C 0.191 3.809 4 N -0.421 5.421 5 C -0.356 4.356 6 H 0.086 0.914 7 C 0.017 3.983 8 N -0.892 5.892 9 Si 0.988 3.012 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.263 1.263 13 C 0.432 3.568 14 O -0.584 6.584 15 C 0.346 3.654 16 F -0.194 7.194 17 F -0.175 7.175 18 C -0.159 4.159 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.070 4.070 22 C -0.110 4.110 23 C -0.123 4.123 24 C -0.087 4.087 25 H 0.258 0.742 26 H 0.142 0.858 27 H 0.071 0.929 28 H 0.281 0.719 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 11.220 3.307 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.225 4.225 3 C 0.070 3.930 4 N -0.138 5.138 5 C -0.484 4.484 6 H 0.103 0.897 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.810 3.190 10 H -0.193 1.193 11 H -0.194 1.194 12 H -0.188 1.188 13 C 0.217 3.783 14 O -0.469 6.469 15 C 0.307 3.693 16 F -0.175 7.175 17 F -0.156 7.156 18 C -0.161 4.161 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.070 4.070 22 C -0.166 4.166 23 C -0.140 4.140 24 C -0.105 4.105 25 H 0.274 0.726 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.174 0.826 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.176 0.824 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.183 11.012 3.838 12.088 hybrid contribution -0.396 -0.698 -1.185 1.431 sum 2.787 10.314 2.653 11.008 Atomic orbital electron populations 1.25672 0.96449 0.99527 1.00416 1.24267 0.95831 1.01517 1.00859 1.18870 0.83637 0.94469 0.96034 1.43606 1.52826 1.09457 1.07884 1.19685 1.39534 1.08695 0.80456 0.89656 1.26292 0.93146 0.94414 1.04760 1.69514 1.37874 1.07947 1.37517 0.85011 0.79373 0.78144 0.76480 1.19278 1.19375 1.18753 1.21055 0.82495 0.86584 0.88150 1.90559 1.57934 1.84553 1.13854 1.19461 0.77778 0.89658 0.82421 1.92961 1.51673 1.83555 1.89268 1.93040 1.73363 1.91430 1.57784 1.19930 0.95426 0.98304 1.02414 1.21047 0.92289 0.99445 0.98779 1.21294 1.01196 0.94815 0.96745 1.20502 0.93972 0.96204 0.96349 1.20883 0.99951 0.97377 0.98412 1.21312 0.94257 0.99425 0.99039 1.20992 1.00300 0.93904 0.95340 0.72555 0.84180 0.91080 0.90831 0.86112 0.82616 0.89275 0.90068 0.90193 0.82421 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.85 19.25 74.32 1.43 -6.42 16 2 C -0.22 -10.58 13.64 31.12 0.42 -10.16 16 3 C 0.19 9.92 5.63 84.57 0.48 10.40 16 4 N -0.42 -22.88 2.49 -645.40 -1.61 -24.49 16 5 C -0.36 -19.20 7.05 84.04 0.59 -18.61 16 6 H 0.09 4.63 7.10 -2.91 -0.02 4.61 16 7 C 0.02 0.88 5.40 84.93 0.46 1.34 16 8 N -0.89 -46.79 10.76 21.67 0.23 -46.56 16 9 Si 0.99 40.69 29.55 68.60 2.03 42.71 16 10 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 13 C 0.43 22.93 7.13 87.65 0.62 23.55 16 14 O -0.58 -32.36 15.67 -3.08 -0.05 -32.41 16 15 C 0.35 16.29 1.66 29.10 0.05 16.34 16 16 F -0.19 -8.91 16.20 44.97 0.73 -8.18 16 17 F -0.18 -8.45 13.56 44.97 0.61 -7.84 16 18 C -0.16 -6.46 4.34 -19.86 -0.09 -6.54 16 19 C -0.10 -3.50 9.40 22.27 0.21 -3.29 16 20 C -0.12 -3.35 9.70 22.27 0.22 -3.14 16 21 C -0.07 -1.68 5.88 -19.87 -0.12 -1.80 16 22 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 23 C -0.12 -3.27 9.70 22.27 0.22 -3.05 16 24 C -0.09 -3.05 9.38 22.27 0.21 -2.84 16 25 H 0.26 6.80 7.80 -4.41 -0.03 6.77 16 26 H 0.14 7.55 5.18 -2.39 -0.01 7.53 16 27 H 0.07 3.72 7.23 -2.39 -0.02 3.70 16 28 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.12 4.42 7.60 -2.91 -0.02 4.40 16 30 H 0.16 3.18 8.06 -2.92 -0.02 3.15 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 33 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.12 4.23 7.61 -2.91 -0.02 4.20 16 Total: -1.00 -66.93 319.00 8.48 -58.46 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.12 Total: 23.41 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.42 Total: -5.10 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.37 Total: -71.05 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 9 Polarization: -17.36 SS G_CDS: 1.34 Total: -16.02 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -66.93 8.48 -58.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281566403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.010 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds