Wall clock time and date at job start Tue Mar 31 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32237 * 120.50326 * 2 1 4 4 C 1.31966 * 121.21975 * 180.02562 * 3 2 1 5 5 C 1.50703 * 118.87201 * 180.02562 * 4 3 2 6 6 C 1.52994 * 117.49828 * 188.74859 * 5 4 3 7 7 C 1.52996 * 117.49643 * 120.08769 * 5 4 3 8 8 N 1.31681 * 122.25412 * 359.97438 * 4 3 2 9 9 C 1.33021 * 120.83975 * 359.74484 * 8 4 3 10 10 S 1.76202 * 120.65164 * 180.28744 * 9 8 4 11 11 C 1.39778 * 120.50182 * 180.02562 * 2 1 3 12 12 C 1.47302 * 121.00251 * 359.97438 * 11 2 1 13 13 O 1.21642 * 119.99711 * 90.00551 * 12 11 2 14 14 N 1.34780 * 119.99975 * 269.72632 * 12 11 2 15 15 C 1.46491 * 120.00184 * 0.27536 * 14 12 11 16 16 C 1.36908 * 119.99882 * 180.27851 * 14 12 11 17 17 H 1.08003 * 119.99939 * 22.48841 * 16 14 12 18 18 C 1.39011 * 120.00224 * 202.49389 * 16 14 12 19 19 N 1.31394 * 119.99782 * 11.50398 * 18 16 14 20 20 Si 1.86801 * 120.00283 * 191.50456 * 18 16 14 21 21 H 1.48492 * 109.46954 * 59.99987 * 20 18 16 22 22 H 1.48501 * 109.47196 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46810 * 299.99860 * 20 18 16 24 24 H 1.09010 * 109.47077 * 269.97895 * 1 2 3 25 25 H 1.09001 * 109.47127 * 29.97331 * 1 2 3 26 26 H 1.09000 * 109.47678 * 149.97561 * 1 2 3 27 27 H 1.08998 * 115.54836 * 334.42002 * 5 4 3 28 28 H 1.08999 * 117.49880 * 0.02562 * 6 5 4 29 29 H 1.09003 * 117.49725 * 145.02117 * 6 5 4 30 30 H 1.09005 * 117.49792 * 214.97899 * 7 5 4 31 31 H 1.09000 * 117.50463 * 359.97386 * 7 5 4 32 32 H 1.40996 * 100.00356 * 270.24120 * 10 9 8 33 33 H 1.09002 * 109.47265 * 92.30766 * 15 14 12 34 34 H 1.09002 * 109.47558 * 212.31025 * 15 14 12 35 35 H 1.09008 * 109.47340 * 332.30633 * 15 14 12 36 36 H 0.96994 * 119.99834 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1781 1.1394 0.0000 4 6 3.4977 1.1559 -0.0005 5 6 4.2088 2.4846 0.0001 6 6 5.7247 2.4746 -0.2069 7 6 5.1424 2.7855 1.1742 8 7 4.2143 0.0511 -0.0005 9 6 3.6273 -1.1425 0.0050 10 16 4.5910 -2.6176 0.0126 11 6 2.2164 -1.2043 -0.0005 12 6 1.5136 -2.4989 -0.0006 13 8 1.2232 -3.0332 -1.0540 14 7 1.1975 -3.0941 1.1667 15 6 1.5473 -2.4507 2.4353 16 6 0.5494 -4.3000 1.1666 17 1 0.6068 -4.9439 0.3014 18 6 -0.1827 -4.6958 2.2801 19 7 -0.4430 -3.8326 3.2359 20 14 -0.7962 -6.4548 2.4177 21 1 0.3608 -7.3854 2.3998 22 1 -1.5441 -6.6201 3.6899 23 1 -1.6926 -6.7573 1.2731 24 1 -0.3634 -0.0004 1.0278 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 3.6484 3.3179 -0.4237 28 1 6.2075 1.5071 -0.3440 29 1 6.1616 3.3016 -0.7666 30 1 5.1966 3.8170 1.5226 31 1 5.2421 2.0228 1.9465 32 1 4.7304 -2.8262 -1.3749 33 1 0.7127 -1.8365 2.7736 34 1 1.7629 -3.2142 3.1828 35 1 2.4268 -1.8224 2.2938 36 1 -0.9541 -4.1086 4.0126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283069157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:49 Heat of formation + Delta-G solvation = 39.484151 kcal Electronic energy + Delta-G solvation = -21437.926907 eV Core-core repulsion = 18242.551062 eV Total energy + Delta-G solvation = -3195.375845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.48647 -40.25279 -38.02246 -36.73845 -35.57683 -34.04399 -33.15791 -29.97100 -28.38254 -27.38008 -25.89186 -24.95506 -23.23099 -22.36150 -21.23488 -19.67927 -19.02247 -18.82162 -18.18624 -17.41775 -16.88377 -16.44428 -15.95920 -15.89409 -15.59922 -15.23656 -14.79265 -14.56484 -14.22164 -13.72829 -13.45870 -13.39786 -13.34666 -13.15528 -12.91056 -12.70316 -12.61335 -12.43254 -12.31919 -12.12569 -11.71617 -11.53671 -11.40093 -11.05554 -10.69077 -10.60106 -10.22324 -9.78193 -9.41165 -8.36515 -6.00833 -0.82010 -0.43462 0.09206 1.24817 1.38314 1.45738 1.55450 1.79253 2.16542 2.27937 2.52278 2.76339 2.86124 3.05690 3.07485 3.34055 3.71219 3.86144 3.89751 3.99844 4.10963 4.33475 4.42453 4.49989 4.61993 4.74633 4.81353 4.91118 4.96134 5.09548 5.16940 5.22585 5.33209 5.44464 5.52068 6.01763 6.39031 6.70197 7.07373 7.32653 7.87774 8.65676 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.004923 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.636782 B = 5686.176738 C = 6038.445999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.205 3.795 3 N -0.500 5.500 4 C 0.342 3.658 5 C -0.120 4.120 6 C -0.143 4.143 7 C -0.141 4.141 8 N -0.487 5.487 9 C 0.175 3.825 10 S -0.092 6.092 11 C -0.177 4.177 12 C 0.497 3.503 13 O -0.621 6.621 14 N -0.422 5.422 15 C 0.132 3.868 16 C -0.340 4.340 17 H 0.080 0.920 18 C 0.007 3.993 19 N -0.889 5.889 20 Si 0.991 3.009 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.274 1.274 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.342 11.941 -1.004 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.056 3.944 3 N -0.214 5.214 4 C 0.073 3.927 5 C -0.140 4.140 6 C -0.180 4.180 7 C -0.179 4.179 8 N -0.202 5.202 9 C -0.083 4.083 10 S 0.064 5.936 11 C -0.189 4.189 12 C 0.284 3.716 13 O -0.510 6.510 14 N -0.137 5.137 15 C -0.012 4.012 16 C -0.468 4.468 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.527 5.527 20 Si 0.814 3.186 21 H -0.192 1.192 22 H -0.195 1.195 23 H -0.199 1.199 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.092 11.738 -1.016 14.882 hybrid contribution -1.356 -1.165 -0.787 1.953 sum 7.736 10.573 -1.804 13.225 Atomic orbital electron populations 1.20845 0.85679 1.04627 1.04804 1.22209 0.98685 0.86002 0.87502 1.68080 1.09863 1.28871 1.14631 1.23171 0.86211 0.94233 0.89105 1.20871 0.93441 0.90745 1.08920 1.23130 0.91102 1.04488 0.99315 1.23110 0.99578 1.04097 0.91162 1.68703 1.40214 0.97179 1.14140 1.23172 0.91503 0.96674 0.96927 1.86971 1.68582 1.23673 1.14335 1.22153 0.95173 0.97402 1.04131 1.17395 0.85136 0.84567 0.84504 1.90606 1.61572 1.66625 1.32160 1.43503 1.47872 1.18038 1.04306 1.21325 0.97036 0.96945 0.85853 1.19623 1.29422 0.94273 1.03482 0.90165 1.26096 0.95188 1.03345 0.95035 1.70032 1.37418 1.35323 1.09878 0.85033 0.78471 0.77276 0.77842 1.19237 1.19469 1.19925 0.88372 0.86900 0.91536 0.83393 0.88841 0.85152 0.84824 0.89959 0.90770 0.92792 0.91755 0.95004 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.45 9.85 71.23 0.70 -2.75 16 2 C 0.21 7.76 6.86 42.87 0.29 8.05 16 3 N -0.50 -17.00 10.24 -175.16 -1.79 -18.79 16 4 C 0.34 10.80 7.31 138.73 1.01 11.81 16 5 C -0.12 -2.62 6.23 -11.54 -0.07 -2.69 16 6 C -0.14 -2.50 10.01 30.62 0.31 -2.19 16 7 C -0.14 -2.46 10.24 30.62 0.31 -2.15 16 8 N -0.49 -16.78 9.32 -182.76 -1.70 -18.48 16 9 C 0.18 6.82 6.72 85.25 0.57 7.39 16 10 S -0.09 -3.34 25.15 -56.49 -1.42 -4.76 16 11 C -0.18 -7.52 3.92 -19.79 -0.08 -7.60 16 12 C 0.50 24.90 4.77 86.63 0.41 25.31 16 13 O -0.62 -35.40 16.80 -4.16 -0.07 -35.47 16 14 N -0.42 -21.68 3.01 -662.78 -2.00 -23.68 16 15 C 0.13 6.08 8.54 127.77 1.09 7.17 16 16 C -0.34 -18.70 9.28 84.09 0.78 -17.92 16 17 H 0.08 4.67 7.40 -2.91 -0.02 4.65 16 18 C 0.01 0.34 5.11 84.94 0.43 0.77 16 19 N -0.89 -45.07 10.61 21.68 0.23 -44.84 16 20 Si 0.99 40.82 29.57 68.60 2.03 42.84 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 25 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.07 2.59 7.18 -2.39 -0.02 2.57 16 27 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.09 2.01 7.53 -2.39 -0.02 1.99 16 29 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 1.52 8.14 -2.38 -0.02 1.51 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.13 4.23 9.55 73.80 0.70 4.93 16 33 H 0.05 2.52 7.53 -2.39 -0.02 2.51 16 34 H 0.06 3.07 7.07 -2.39 -0.02 3.05 16 35 H 0.03 1.35 6.46 -2.38 -0.02 1.33 16 36 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -64.39 324.74 2.88 -61.51 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.83 Total: 16.45 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.77 Total: 25.20 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -5.26 Total: -105.79 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.07 Total: -35.47 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.42 Total: -4.76 kcal Total: -64.39 2.88 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283069157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.999 kcal (2) G-P(sol) polarization free energy of solvation -64.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds