Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32421 * 120.25566 * 2 1 4 4 C 1.33057 * 121.90332 * 180.02562 * 3 2 1 5 5 S 1.76444 * 129.52066 * 180.02562 * 4 3 2 6 6 C 1.75724 * 90.71803 * 180.02562 * 5 4 3 7 7 C 1.30892 * 109.69722 * 359.97438 * 6 5 4 8 8 N 1.35370 * 121.33822 * 0.02562 * 4 3 2 9 9 C 1.36345 * 118.86283 * 0.02562 * 8 4 3 10 10 O 1.22101 * 120.19818 * 180.02562 * 9 8 4 11 11 C 1.37872 * 120.25876 * 180.02562 * 2 1 3 12 12 C 1.50692 * 120.59726 * 359.70413 * 11 2 1 13 13 C 1.52999 * 109.47658 * 94.99597 * 12 11 2 14 14 N 1.46498 * 109.47546 * 180.02562 * 13 12 11 15 15 C 1.46494 * 120.00109 * 90.00046 * 14 13 12 16 16 C 1.36942 * 119.99820 * 270.00176 * 14 13 12 17 17 H 1.07993 * 120.00204 * 23.04405 * 16 14 13 18 18 C 1.38815 * 119.99495 * 203.04494 * 16 14 13 19 19 N 1.31614 * 120.00580 * 12.92865 * 18 16 14 20 20 Si 1.86807 * 119.99584 * 192.92882 * 18 16 14 21 21 H 1.48499 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46930 * 119.99755 * 20 18 16 23 23 H 1.48498 * 109.46989 * 239.99998 * 20 18 16 24 24 H 1.09001 * 109.46521 * 269.97148 * 1 2 3 25 25 H 1.09000 * 109.47124 * 29.97200 * 1 2 3 26 26 H 1.08997 * 109.47057 * 149.97570 * 1 2 3 27 27 H 1.07997 * 125.15484 * 179.97438 * 6 5 4 28 28 H 1.07996 * 121.69319 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.47335 * 214.99953 * 12 11 2 30 30 H 1.09004 * 109.47297 * 334.99726 * 12 11 2 31 31 H 1.08998 * 109.47223 * 300.00471 * 13 12 11 32 32 H 1.09007 * 109.47157 * 59.99727 * 13 12 11 33 33 H 1.09000 * 109.47426 * 95.12154 * 15 14 13 34 34 H 1.09001 * 109.47390 * 215.12148 * 15 14 13 35 35 H 1.09003 * 109.47125 * 335.12653 * 15 14 13 36 36 H 0.97001 * 120.00310 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1743 1.1438 0.0000 4 6 3.5043 1.1821 -0.0005 5 16 4.5875 2.5749 0.0000 6 6 5.9880 1.5136 -0.0021 7 6 5.5954 0.2649 -0.0024 8 7 4.2413 0.0466 -0.0016 9 6 3.5980 -1.1556 -0.0026 10 8 4.2387 -2.1950 -0.0031 11 6 2.2018 -1.1909 -0.0005 12 6 1.4680 -2.5070 0.0056 13 6 1.3228 -3.0168 -1.4297 14 7 0.6088 -4.2960 -1.4237 15 6 -0.8522 -4.3199 -1.5279 16 6 1.3073 -5.4695 -1.3208 17 1 2.2941 -5.4739 -0.8822 18 6 0.7467 -6.6533 -1.7805 19 7 -0.3298 -6.6216 -2.5370 20 14 1.5203 -8.2915 -1.3251 21 1 2.7124 -8.0558 -0.4716 22 1 0.5339 -9.1147 -0.5802 23 1 1.9290 -9.0064 -2.5608 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 7.0170 1.8417 -0.0029 28 1 6.3017 -0.5520 -0.0032 29 1 2.0289 -3.2331 0.5941 30 1 0.4795 -2.3699 0.4441 31 1 0.7619 -2.2908 -2.0182 32 1 2.3113 -3.1540 -1.8682 33 1 -1.1400 -4.4632 -2.5694 34 1 -1.2460 -5.1391 -0.9262 35 1 -1.2578 -3.3752 -1.1656 36 1 -0.7217 -7.4489 -2.8579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286085096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = 64.453543 kcal Electronic energy + Delta-G solvation = -21075.478212 eV Core-core repulsion = 17881.185121 eV Total energy + Delta-G solvation = -3194.293091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.38677 -38.12005 -37.62732 -35.69980 -33.18111 -31.78574 -30.96654 -29.36400 -27.61962 -25.87490 -25.43348 -23.58687 -22.58998 -21.39224 -20.17487 -19.11621 -18.57678 -16.83951 -16.73877 -16.51684 -15.45749 -15.04390 -14.80807 -14.19321 -13.86570 -13.68180 -13.53558 -13.46725 -13.14263 -12.74032 -12.59244 -12.12806 -11.89294 -11.83111 -11.74992 -11.16040 -10.80480 -10.78345 -10.51259 -10.36252 -10.21244 -10.08839 -10.03882 -9.76481 -9.66469 -9.25096 -8.48773 -7.63836 -6.63473 -5.65204 -3.09570 0.06637 0.40386 1.17521 1.20664 1.82075 2.15308 3.43271 3.49466 3.50747 3.54844 4.01688 4.16577 4.57419 4.70081 4.82534 4.96798 5.22172 5.29436 5.50471 5.60377 5.61291 5.69402 5.92766 5.96279 6.09485 6.27749 6.30549 6.37263 6.48241 6.79054 6.94340 7.05314 7.42996 7.52566 7.75035 7.78813 7.91864 8.47979 9.32064 9.94677 10.42902 11.39394 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.003966 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.206712 B = 7058.414621 C = 7921.400676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.183 3.817 3 N -0.503 5.503 4 C 0.284 3.716 5 S 0.185 5.815 6 C -0.240 4.240 7 C 0.070 3.930 8 N -0.462 5.462 9 C 0.525 3.475 10 O -0.506 6.506 11 C -0.235 4.235 12 C -0.074 4.074 13 C 0.161 3.839 14 N -0.599 5.599 15 C 0.161 3.839 16 C -0.249 4.249 17 H 0.070 0.930 18 C 0.000 4.000 19 N -0.909 5.909 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.291 1.291 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.199 0.801 28 H 0.190 0.810 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.041 0.959 35 H -0.002 1.002 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.640 21.339 6.090 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.056 3.944 3 N -0.230 5.230 4 C -0.083 4.083 5 S 0.434 5.566 6 C -0.377 4.377 7 C -0.057 4.057 8 N -0.175 5.175 9 C 0.327 3.673 10 O -0.382 6.382 11 C -0.247 4.247 12 C -0.115 4.115 13 C 0.033 3.967 14 N -0.320 5.320 15 C 0.017 3.983 16 C -0.379 4.379 17 H 0.088 0.912 18 C -0.198 4.198 19 N -0.554 5.554 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.218 1.218 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.216 0.784 28 H 0.207 0.793 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.205 22.450 5.995 24.643 hybrid contribution 1.187 -3.015 0.204 3.247 sum 9.391 19.435 6.199 22.458 Atomic orbital electron populations 1.20816 0.87106 1.04523 1.03705 1.21236 0.97242 0.86215 0.89671 1.67923 1.01097 1.29598 1.24408 1.25939 0.93349 0.90533 0.98466 1.85129 0.91127 1.00436 1.79904 1.25046 1.04671 0.94555 1.13439 1.20868 0.84633 0.99666 1.00520 1.45314 1.06755 1.09675 1.55723 1.17332 0.89307 0.81055 0.79629 1.91019 1.67641 1.29532 1.49974 1.21578 0.90765 0.98971 1.13349 1.21063 0.98169 0.89898 1.02410 1.20646 0.96456 0.87775 0.91819 1.43957 1.02220 1.00828 1.85026 1.20811 0.82520 0.95150 0.99835 1.19320 1.00765 0.84973 1.32794 0.91182 1.25010 0.98351 0.98354 0.98068 1.70079 1.23350 1.25813 1.36192 0.86195 0.78638 0.84113 0.77763 1.20235 1.21635 1.21762 0.89628 0.90109 0.88914 0.78424 0.79270 0.90432 0.90976 0.94792 0.93486 0.95038 0.94072 0.98352 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.41 36.01 0.34 -0.91 16 2 C 0.18 2.70 6.81 -82.47 -0.56 2.14 16 3 N -0.50 -7.12 10.36 -9.01 -0.09 -7.21 16 4 C 0.28 3.65 8.32 -87.90 -0.73 2.91 16 5 S 0.19 1.49 23.37 -107.50 -2.51 -1.02 16 6 C -0.24 -1.60 11.12 29.04 0.32 -1.28 16 7 C 0.07 0.70 10.46 -16.86 -0.18 0.53 16 8 N -0.46 -6.46 2.82 -66.36 -0.19 -6.65 16 9 C 0.52 9.36 7.50 -15.01 -0.11 9.25 16 10 O -0.51 -10.63 16.68 4.83 0.08 -10.55 16 11 C -0.23 -4.07 5.18 -104.23 -0.54 -4.61 16 12 C -0.07 -1.44 4.78 -27.89 -0.13 -1.57 16 13 C 0.16 3.60 5.58 -4.04 -0.02 3.58 16 14 N -0.60 -15.80 2.92 -181.12 -0.53 -16.33 16 15 C 0.16 4.04 8.98 59.84 0.54 4.58 16 16 C -0.25 -7.23 9.65 -15.06 -0.15 -7.38 16 17 H 0.07 2.06 7.86 -52.49 -0.41 1.65 16 18 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 19 N -0.91 -27.30 10.71 55.49 0.59 -26.70 16 20 Si 0.90 22.81 29.57 -169.99 -5.03 17.78 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.18 6.43 -51.93 -0.33 0.85 16 27 H 0.20 0.54 8.06 -52.49 -0.42 0.12 16 28 H 0.19 1.67 8.00 -52.49 -0.42 1.25 16 29 H 0.08 1.71 7.77 -51.92 -0.40 1.30 16 30 H 0.07 1.28 6.51 -51.93 -0.34 0.94 16 31 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 33 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 34 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 35 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -34.88 318.49 -8.50 -43.39 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.32 Total: -4.67 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -1.31 Total: 7.16 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.22 Total: -56.89 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.51 Total: -1.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.88 -8.50 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286085096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.839 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds