Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32421 * 120.25566 * 2 1 4 4 C 1.33057 * 121.90332 * 180.02562 * 3 2 1 5 5 S 1.76444 * 129.52066 * 180.02562 * 4 3 2 6 6 C 1.75724 * 90.71803 * 180.02562 * 5 4 3 7 7 C 1.30892 * 109.69722 * 359.97438 * 6 5 4 8 8 N 1.35370 * 121.33822 * 0.02562 * 4 3 2 9 9 C 1.36345 * 118.86283 * 0.02562 * 8 4 3 10 10 O 1.22101 * 120.19818 * 180.02562 * 9 8 4 11 11 C 1.37872 * 120.25876 * 180.02562 * 2 1 3 12 12 C 1.50692 * 120.59726 * 359.70413 * 11 2 1 13 13 C 1.52999 * 109.47658 * 94.99597 * 12 11 2 14 14 N 1.46498 * 109.47546 * 180.02562 * 13 12 11 15 15 C 1.46494 * 120.00109 * 90.00046 * 14 13 12 16 16 C 1.36942 * 119.99820 * 270.00176 * 14 13 12 17 17 H 1.07993 * 120.00204 * 23.04405 * 16 14 13 18 18 C 1.38815 * 119.99495 * 203.04494 * 16 14 13 19 19 N 1.31614 * 120.00580 * 12.92865 * 18 16 14 20 20 Si 1.86807 * 119.99584 * 192.92882 * 18 16 14 21 21 H 1.48499 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46930 * 119.99755 * 20 18 16 23 23 H 1.48498 * 109.46989 * 239.99998 * 20 18 16 24 24 H 1.09001 * 109.46521 * 269.97148 * 1 2 3 25 25 H 1.09000 * 109.47124 * 29.97200 * 1 2 3 26 26 H 1.08997 * 109.47057 * 149.97570 * 1 2 3 27 27 H 1.07997 * 125.15484 * 179.97438 * 6 5 4 28 28 H 1.07996 * 121.69319 * 180.02562 * 7 6 5 29 29 H 1.09007 * 109.47335 * 214.99953 * 12 11 2 30 30 H 1.09004 * 109.47297 * 334.99726 * 12 11 2 31 31 H 1.08998 * 109.47223 * 300.00471 * 13 12 11 32 32 H 1.09007 * 109.47157 * 59.99727 * 13 12 11 33 33 H 1.09000 * 109.47426 * 95.12154 * 15 14 13 34 34 H 1.09001 * 109.47390 * 215.12148 * 15 14 13 35 35 H 1.09003 * 109.47125 * 335.12653 * 15 14 13 36 36 H 0.97001 * 120.00310 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1743 1.1438 0.0000 4 6 3.5043 1.1821 -0.0005 5 16 4.5875 2.5749 0.0000 6 6 5.9880 1.5136 -0.0021 7 6 5.5954 0.2649 -0.0024 8 7 4.2413 0.0466 -0.0016 9 6 3.5980 -1.1556 -0.0026 10 8 4.2387 -2.1950 -0.0031 11 6 2.2018 -1.1909 -0.0005 12 6 1.4680 -2.5070 0.0056 13 6 1.3228 -3.0168 -1.4297 14 7 0.6088 -4.2960 -1.4237 15 6 -0.8522 -4.3199 -1.5279 16 6 1.3073 -5.4695 -1.3208 17 1 2.2941 -5.4739 -0.8822 18 6 0.7467 -6.6533 -1.7805 19 7 -0.3298 -6.6216 -2.5370 20 14 1.5203 -8.2915 -1.3251 21 1 2.7124 -8.0558 -0.4716 22 1 0.5339 -9.1147 -0.5802 23 1 1.9290 -9.0064 -2.5608 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 7.0170 1.8417 -0.0029 28 1 6.3017 -0.5520 -0.0032 29 1 2.0289 -3.2331 0.5941 30 1 0.4795 -2.3699 0.4441 31 1 0.7619 -2.2908 -2.0182 32 1 2.3113 -3.1540 -1.8682 33 1 -1.1400 -4.4632 -2.5694 34 1 -1.2460 -5.1391 -0.9262 35 1 -1.2578 -3.3752 -1.1656 36 1 -0.7217 -7.4489 -2.8579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286085096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = 41.782022 kcal Electronic energy + Delta-G solvation = -21076.461323 eV Core-core repulsion = 17881.185121 eV Total energy + Delta-G solvation = -3195.276202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.47969 -39.30095 -38.82492 -37.55716 -34.65019 -33.09530 -32.55102 -30.67293 -28.92036 -27.92160 -26.79022 -24.98192 -23.83384 -22.69521 -21.84238 -20.15119 -19.61486 -18.72313 -17.90762 -17.79120 -16.95665 -16.61822 -15.83407 -15.48986 -15.48735 -15.13784 -14.83162 -14.80108 -14.39725 -14.23476 -13.93743 -13.82434 -13.27273 -12.90277 -12.81951 -12.74740 -12.66661 -12.58474 -12.43547 -12.10204 -11.92701 -11.65472 -11.41262 -11.26405 -11.13863 -10.69312 -10.24445 -8.90121 -8.56010 -7.84402 -5.33845 -0.97482 -0.49968 0.24744 0.40913 0.78516 1.14592 1.41799 1.42036 1.54649 2.30713 2.49034 2.99506 3.13530 3.27023 3.60685 3.83422 3.99435 4.14933 4.26973 4.32643 4.47611 4.62533 4.65818 4.74365 4.74987 4.79754 4.91762 5.03857 5.13915 5.20724 5.33541 5.35756 5.46717 5.61869 5.72023 6.31874 6.41528 6.54270 7.14765 7.85989 8.27937 9.17512 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026280 B = 0.003966 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.206712 B = 7058.414621 C = 7921.400676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.220 3.780 3 N -0.522 5.522 4 C 0.266 3.734 5 S 0.278 5.722 6 C -0.192 4.192 7 C 0.019 3.981 8 N -0.461 5.461 9 C 0.513 3.487 10 O -0.565 6.565 11 C -0.292 4.292 12 C -0.047 4.047 13 C 0.167 3.833 14 N -0.619 5.619 15 C 0.176 3.824 16 C -0.264 4.264 17 H 0.053 0.947 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.287 1.287 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.250 0.750 28 H 0.193 0.807 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.013 0.987 33 H 0.006 0.994 34 H 0.016 0.984 35 H 0.041 0.959 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.810 25.268 6.817 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.251 5.251 4 C -0.098 4.098 5 S 0.528 5.472 6 C -0.328 4.328 7 C -0.107 4.107 8 N -0.171 5.171 9 C 0.318 3.682 10 O -0.446 6.446 11 C -0.304 4.304 12 C -0.088 4.088 13 C 0.041 3.959 14 N -0.342 5.342 15 C 0.032 3.968 16 C -0.394 4.394 17 H 0.071 0.929 18 C -0.244 4.244 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.214 1.214 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.266 0.734 28 H 0.210 0.790 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.456 26.497 6.738 28.929 hybrid contribution 1.058 -3.707 0.001 3.855 sum 10.514 22.790 6.740 25.987 Atomic orbital electron populations 1.20955 0.85009 1.05102 1.05209 1.21633 0.98578 0.85534 0.85237 1.68087 1.01737 1.28673 1.26565 1.27139 0.93923 0.92246 0.96488 1.85090 0.88985 0.96989 1.76125 1.25799 1.06735 0.92790 1.07487 1.21184 0.83115 1.01582 1.04778 1.45254 1.08478 1.09050 1.54315 1.17408 0.89708 0.81510 0.79592 1.90965 1.68646 1.31485 1.53538 1.21198 0.90924 0.98662 1.19604 1.20519 0.98670 0.90388 0.99212 1.20684 0.94455 0.86676 0.94127 1.44168 1.02834 1.01406 1.85822 1.20589 0.81938 0.96390 0.97929 1.19421 1.00591 0.86658 1.32747 0.92906 1.25727 0.99117 1.01331 0.98212 1.70221 1.24439 1.26380 1.37148 0.85222 0.77870 0.80051 0.77435 1.20126 1.20838 1.21364 0.87454 0.88027 0.89694 0.73355 0.79010 0.94483 0.89369 0.92887 0.96799 0.97615 0.96506 0.94021 0.94060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.41 71.24 0.67 -1.63 16 2 C 0.22 6.32 6.81 42.39 0.29 6.61 16 3 N -0.52 -13.70 10.36 -182.42 -1.89 -15.59 16 4 C 0.27 6.22 8.32 179.40 1.49 7.71 16 5 S 0.28 3.08 23.37 -56.49 -1.32 1.76 16 6 C -0.19 -1.60 11.12 67.89 0.75 -0.85 16 7 C 0.02 0.34 10.46 83.93 0.88 1.22 16 8 N -0.46 -12.68 2.82 -481.02 -1.36 -14.04 16 9 C 0.51 19.34 7.50 84.34 0.63 19.97 16 10 O -0.57 -25.95 16.68 -5.65 -0.09 -26.05 16 11 C -0.29 -10.51 5.18 -19.61 -0.10 -10.62 16 12 C -0.05 -1.93 4.78 29.85 0.14 -1.78 16 13 C 0.17 7.87 5.58 86.38 0.48 8.36 16 14 N -0.62 -34.18 2.92 -726.95 -2.12 -36.30 16 15 C 0.18 9.05 8.98 127.77 1.15 10.20 16 16 C -0.26 -16.14 9.65 84.03 0.81 -15.33 16 17 H 0.05 3.33 7.86 -2.91 -0.02 3.31 16 18 C -0.05 -2.94 5.10 84.86 0.43 -2.50 16 19 N -0.94 -57.95 10.71 21.65 0.23 -57.72 16 20 Si 0.97 48.52 29.57 68.60 2.03 50.55 16 21 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 2.02 6.43 -2.39 -0.02 2.01 16 27 H 0.25 -0.44 8.06 -2.91 -0.02 -0.47 16 28 H 0.19 3.35 8.00 -2.91 -0.02 3.32 16 29 H 0.04 1.77 7.77 -2.38 -0.02 1.76 16 30 H 0.09 3.20 6.51 -2.39 -0.02 3.18 16 31 H 0.05 2.24 7.86 -2.39 -0.02 2.22 16 32 H 0.01 0.72 8.04 -2.38 -0.02 0.70 16 33 H 0.01 0.31 7.34 -2.39 -0.02 0.29 16 34 H 0.02 0.90 7.34 -2.39 -0.02 0.89 16 35 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -82.97 318.49 4.21 -78.76 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: 1.10 Total: -2.72 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 7.63 Total: 21.35 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.14 Total: -123.65 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.09 Total: -26.05 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.32 Total: 1.76 kcal Total: -82.97 4.21 -78.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286085096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.544 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds