Wall clock time and date at job start Tue Mar 31 2020 07:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47197 * 178.55706 * 3 2 1 5 5 C 1.36934 * 119.99648 * 275.88355 * 4 3 2 6 6 H 1.07996 * 120.00221 * 175.82234 * 5 4 3 7 7 C 1.38813 * 120.00291 * 355.81960 * 5 4 3 8 8 N 1.31622 * 119.99717 * 33.99233 * 7 5 4 9 9 Si 1.86794 * 120.00287 * 213.98631 * 7 5 4 10 10 H 1.48503 * 109.47089 * 85.00406 * 9 7 5 11 11 H 1.48507 * 109.47335 * 204.99750 * 9 7 5 12 12 H 1.48495 * 109.47438 * 325.00262 * 9 7 5 13 13 C 1.46499 * 120.00267 * 95.88341 * 4 3 2 14 14 C 1.52995 * 109.46919 * 270.00181 * 13 4 3 15 15 H 1.08998 * 109.47165 * 304.99513 * 14 13 4 16 16 O 1.42891 * 109.47489 * 64.99901 * 14 13 4 17 17 C 1.53007 * 109.46981 * 185.00189 * 14 13 4 18 18 C 1.50693 * 109.47177 * 174.99885 * 17 14 13 19 19 C 1.38267 * 119.99452 * 89.99962 * 18 17 14 20 20 C 1.38224 * 120.02546 * 179.97438 * 19 18 17 21 21 C 1.38226 * 120.01390 * 0.25288 * 20 19 18 22 22 C 1.38329 * 119.99056 * 359.47292 * 21 20 19 23 23 Cl 1.73595 * 120.01925 * 180.29766 * 22 21 20 24 24 C 1.38199 * 119.99502 * 269.97266 * 18 17 14 25 25 H 4.40641 * 5.51409 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47341 * 58.55421 * 3 2 1 27 27 H 1.09004 * 109.47360 * 298.55269 * 3 2 1 28 28 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46900 * 150.00195 * 13 4 3 30 30 H 1.08999 * 109.47183 * 30.00195 * 13 4 3 31 31 H 0.96707 * 114.00114 * 59.99714 * 16 14 13 32 32 H 1.09003 * 109.47048 * 54.99629 * 17 14 13 33 33 H 1.08998 * 109.46766 * 294.99764 * 17 14 13 34 34 H 1.08001 * 119.98599 * 359.97438 * 19 18 17 35 35 H 1.08005 * 119.99131 * 179.97438 * 20 19 18 36 36 H 1.08006 * 120.00664 * 179.74462 * 21 20 19 37 37 H 1.07997 * 120.00049 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3817 -0.0348 5 6 3.2470 2.0377 -1.2314 6 1 3.5418 3.0765 -1.2519 7 6 2.9831 1.3677 -2.4181 8 7 2.0520 0.4381 -2.4559 9 14 3.9490 1.7854 -3.9614 10 1 5.2183 1.0147 -3.9746 11 1 3.1444 1.4344 -5.1592 12 1 4.2523 3.2390 -3.9773 13 6 3.5002 2.0607 1.2105 14 6 2.2748 2.7783 1.7798 15 1 1.8625 3.4477 1.0249 16 8 1.2879 1.8140 2.1513 17 6 2.6847 3.5890 3.0110 18 6 1.5065 4.3919 3.4989 19 6 0.6394 3.8509 4.4301 20 6 -0.4412 4.5870 4.8784 21 6 -0.6586 5.8625 4.3921 22 6 0.2118 6.4065 3.4647 23 17 -0.0561 8.0112 2.8592 24 6 1.2932 5.6690 3.0158 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0096 -0.5353 -0.8768 27 1 3.0096 -0.4904 0.9027 28 1 1.8672 -0.0298 -3.2852 29 1 4.2867 2.7883 1.0097 30 1 3.8596 1.3271 1.9322 31 1 1.5864 1.1838 2.8214 32 1 3.4997 4.2631 2.7473 33 1 3.0140 2.9115 3.7988 34 1 0.8065 2.8528 4.8073 35 1 -1.1185 4.1637 5.6056 36 1 -1.5053 6.4360 4.7394 37 1 1.9711 6.0917 2.2891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286695547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:29 Heat of formation + Delta-G solvation = 50.717583 kcal Electronic energy + Delta-G solvation = -20860.393102 eV Core-core repulsion = 17631.167918 eV Total energy + Delta-G solvation = -3229.225184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.51524 -37.49375 -36.44464 -35.20399 -32.68197 -31.39595 -31.23289 -30.69908 -28.84190 -26.18084 -25.65755 -22.79023 -22.55568 -21.02612 -20.65153 -17.50118 -17.04749 -16.23254 -15.80644 -15.75095 -15.23474 -14.82259 -14.53425 -14.22059 -13.80742 -13.65861 -13.25615 -13.15307 -12.93019 -12.48432 -11.88798 -11.53060 -11.50078 -11.42212 -11.28422 -11.19229 -10.89508 -10.80161 -10.63224 -10.36656 -10.27144 -9.94014 -9.69912 -8.85990 -8.69605 -8.64939 -8.50585 -8.09920 -7.07388 -5.85235 -3.05188 1.19471 1.28492 2.11195 3.40379 3.49179 3.50063 3.64217 4.32850 4.59003 4.68785 4.72245 4.79032 4.99498 5.04431 5.23424 5.27940 5.34656 5.36980 5.50918 5.64339 5.85940 5.86965 5.93031 5.99057 6.11019 6.13135 6.22219 6.32574 6.49688 6.54108 6.69744 6.81822 6.83746 7.40548 7.57392 7.80841 8.21810 8.31219 9.11540 9.47168 9.80537 10.23906 11.19819 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.004215 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.171609 B = 6640.895396 C = 7411.520831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.083 4.083 3 C 0.266 3.734 4 N -0.583 5.583 5 C -0.272 4.272 6 H 0.079 0.921 7 C 0.012 3.988 8 N -0.871 5.871 9 Si 0.881 3.119 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.124 3.876 14 C 0.087 3.913 15 H 0.095 0.905 16 O -0.536 6.536 17 C -0.117 4.117 18 C -0.049 4.049 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.032 4.032 23 Cl -0.080 7.080 24 C -0.111 4.111 25 H 0.182 0.818 26 H 0.094 0.906 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.353 0.647 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 6.882 15.553 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.086 4.086 3 C 0.142 3.858 4 N -0.302 5.302 5 C -0.400 4.400 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.513 5.513 9 Si 0.710 3.290 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.207 1.207 13 C -0.004 4.004 14 C 0.024 3.976 15 H 0.113 0.887 16 O -0.338 6.338 17 C -0.156 4.156 18 C -0.050 4.050 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.058 4.058 23 Cl -0.051 7.051 24 C -0.130 4.130 25 H 0.200 0.800 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.198 0.802 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.382 7.257 14.873 16.607 hybrid contribution 0.199 0.328 -0.707 0.804 sum -1.183 7.585 14.166 16.112 Atomic orbital electron populations 1.23953 0.95113 1.04658 1.08123 1.23924 0.94860 0.96165 0.93611 1.18079 0.83300 0.85928 0.98535 1.44288 1.73640 1.10605 1.01662 1.19124 1.42075 0.95980 0.82826 0.90357 1.24742 0.97849 0.98723 0.97425 1.70365 1.26458 1.28019 1.26446 0.86607 0.81069 0.78007 0.83314 1.21422 1.22113 1.20681 1.21534 0.94589 0.95593 0.88704 1.22916 0.92095 0.89820 0.92753 0.88746 1.86800 1.40171 1.45035 1.61802 1.21509 0.95131 0.99080 0.99843 1.19816 0.97066 0.93051 0.95021 1.21096 0.94410 0.99545 0.96873 1.21059 0.97812 0.93740 1.00010 1.20955 0.99293 0.96348 0.97646 1.20869 0.98171 0.87234 0.99533 1.98358 1.96255 1.23207 1.87268 1.20965 0.97250 0.94277 1.00485 0.80020 0.88877 0.94892 0.93532 0.92352 0.93772 0.80205 0.90160 0.90772 0.85623 0.85434 0.85457 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.13 19.05 29.55 0.56 -6.57 16 2 C -0.08 -2.02 9.80 -37.12 -0.36 -2.39 16 3 C 0.27 6.20 5.40 -6.83 -0.04 6.16 16 4 N -0.58 -13.57 2.47 -176.57 -0.44 -14.01 16 5 C -0.27 -7.17 9.60 -15.06 -0.14 -7.31 16 6 H 0.08 2.04 8.02 -52.49 -0.42 1.62 16 7 C 0.01 0.34 4.87 -17.43 -0.08 0.25 16 8 N -0.87 -24.68 9.35 55.49 0.52 -24.16 16 9 Si 0.88 21.20 29.67 -169.99 -5.04 16.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.12 2.22 5.36 -4.04 -0.02 2.20 16 14 C 0.09 1.44 3.20 -26.73 -0.09 1.36 16 15 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 16 O -0.54 -9.40 10.47 -35.23 -0.37 -9.76 16 17 C -0.12 -1.46 5.03 -27.88 -0.14 -1.60 16 18 C -0.05 -0.64 4.97 -104.63 -0.52 -1.16 16 19 C -0.10 -1.21 9.40 -39.58 -0.37 -1.58 16 20 C -0.11 -1.20 10.04 -39.59 -0.40 -1.60 16 21 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 22 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 23 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 24 C -0.11 -1.50 9.49 -39.54 -0.38 -1.87 16 25 H 0.18 3.82 7.80 -54.08 -0.42 3.39 16 26 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 27 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.35 4.93 9.05 45.56 0.41 5.34 16 32 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -30.66 334.18 -8.48 -39.14 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.07 Total: 6.69 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.62 Total: -16.62 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.08 Total: -38.16 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.37 Total: -9.76 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.04 Total: 16.16 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.66 -8.48 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286695547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.862 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds