Wall clock time and date at job start Tue Mar 31 2020 07:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47197 * 178.55706 * 3 2 1 5 5 C 1.36934 * 119.99648 * 275.88355 * 4 3 2 6 6 H 1.07996 * 120.00221 * 175.82234 * 5 4 3 7 7 C 1.38813 * 120.00291 * 355.81960 * 5 4 3 8 8 N 1.31622 * 119.99717 * 33.99233 * 7 5 4 9 9 Si 1.86794 * 120.00287 * 213.98631 * 7 5 4 10 10 H 1.48503 * 109.47089 * 85.00406 * 9 7 5 11 11 H 1.48507 * 109.47335 * 204.99750 * 9 7 5 12 12 H 1.48495 * 109.47438 * 325.00262 * 9 7 5 13 13 C 1.46499 * 120.00267 * 95.88341 * 4 3 2 14 14 C 1.52995 * 109.46919 * 270.00181 * 13 4 3 15 15 H 1.08998 * 109.47165 * 304.99513 * 14 13 4 16 16 O 1.42891 * 109.47489 * 64.99901 * 14 13 4 17 17 C 1.53007 * 109.46981 * 185.00189 * 14 13 4 18 18 C 1.50693 * 109.47177 * 174.99885 * 17 14 13 19 19 C 1.38267 * 119.99452 * 89.99962 * 18 17 14 20 20 C 1.38224 * 120.02546 * 179.97438 * 19 18 17 21 21 C 1.38226 * 120.01390 * 0.25288 * 20 19 18 22 22 C 1.38329 * 119.99056 * 359.47292 * 21 20 19 23 23 Cl 1.73595 * 120.01925 * 180.29766 * 22 21 20 24 24 C 1.38199 * 119.99502 * 269.97266 * 18 17 14 25 25 H 4.40641 * 5.51409 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.47341 * 58.55421 * 3 2 1 27 27 H 1.09004 * 109.47360 * 298.55269 * 3 2 1 28 28 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.46900 * 150.00195 * 13 4 3 30 30 H 1.08999 * 109.47183 * 30.00195 * 13 4 3 31 31 H 0.96707 * 114.00114 * 59.99714 * 16 14 13 32 32 H 1.09003 * 109.47048 * 54.99629 * 17 14 13 33 33 H 1.08998 * 109.46766 * 294.99764 * 17 14 13 34 34 H 1.08001 * 119.98599 * 359.97438 * 19 18 17 35 35 H 1.08005 * 119.99131 * 179.97438 * 20 19 18 36 36 H 1.08006 * 120.00664 * 179.74462 * 21 20 19 37 37 H 1.07997 * 120.00049 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3817 -0.0348 5 6 3.2470 2.0377 -1.2314 6 1 3.5418 3.0765 -1.2519 7 6 2.9831 1.3677 -2.4181 8 7 2.0520 0.4381 -2.4559 9 14 3.9490 1.7854 -3.9614 10 1 5.2183 1.0147 -3.9746 11 1 3.1444 1.4344 -5.1592 12 1 4.2523 3.2390 -3.9773 13 6 3.5002 2.0607 1.2105 14 6 2.2748 2.7783 1.7798 15 1 1.8625 3.4477 1.0249 16 8 1.2879 1.8140 2.1513 17 6 2.6847 3.5890 3.0110 18 6 1.5065 4.3919 3.4989 19 6 0.6394 3.8509 4.4301 20 6 -0.4412 4.5870 4.8784 21 6 -0.6586 5.8625 4.3921 22 6 0.2118 6.4065 3.4647 23 17 -0.0561 8.0112 2.8592 24 6 1.2932 5.6690 3.0158 25 1 -1.0502 -0.0004 -0.0002 26 1 3.0096 -0.5353 -0.8768 27 1 3.0096 -0.4904 0.9027 28 1 1.8672 -0.0298 -3.2852 29 1 4.2867 2.7883 1.0097 30 1 3.8596 1.3271 1.9322 31 1 1.5864 1.1838 2.8214 32 1 3.4997 4.2631 2.7473 33 1 3.0140 2.9115 3.7988 34 1 0.8065 2.8528 4.8073 35 1 -1.1185 4.1637 5.6056 36 1 -1.5053 6.4360 4.7394 37 1 1.9711 6.0917 2.2891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286695547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:28 Heat of formation + Delta-G solvation = 33.649019 kcal Electronic energy + Delta-G solvation = -20861.133250 eV Core-core repulsion = 17631.167918 eV Total energy + Delta-G solvation = -3229.965333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48657 -38.86908 -37.46499 -36.82067 -33.78271 -33.33338 -32.91490 -31.61915 -30.19262 -27.91768 -27.18515 -24.19046 -23.56427 -22.35019 -21.92192 -19.37465 -18.18772 -17.86843 -17.18430 -16.82941 -16.51988 -16.21359 -15.91621 -15.62528 -15.35235 -14.89627 -14.61163 -14.43470 -14.10818 -13.93742 -13.41570 -13.11890 -12.89535 -12.69637 -12.43102 -12.40836 -12.29087 -12.17687 -12.10394 -11.88460 -11.80758 -11.63283 -11.11147 -10.55851 -10.45330 -10.03474 -9.79124 -9.55969 -8.90112 -7.88483 -5.06405 0.25908 0.35380 1.15947 1.47761 1.52473 1.57744 2.46430 2.67209 2.71105 2.83186 3.20940 3.64004 3.87442 3.89109 3.95515 4.12706 4.25369 4.35472 4.39004 4.43668 4.50301 4.59146 4.68889 4.87581 4.94854 4.98630 5.06996 5.15722 5.28474 5.36877 5.44778 5.52125 5.66364 5.69372 5.82911 5.93524 6.26926 7.14162 7.16853 7.60983 7.91902 8.30522 9.15396 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.004215 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.171609 B = 6640.895396 C = 7411.520831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.099 4.099 3 C 0.268 3.732 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.075 0.925 7 C -0.038 4.038 8 N -0.900 5.900 9 Si 0.938 3.062 10 H -0.284 1.284 11 H -0.305 1.305 12 H -0.277 1.277 13 C 0.118 3.882 14 C 0.103 3.897 15 H 0.046 0.954 16 O -0.555 6.555 17 C -0.103 4.103 18 C -0.064 4.064 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.047 4.047 23 Cl -0.081 7.081 24 C -0.130 4.130 25 H 0.203 0.797 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.246 0.754 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.371 0.629 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 6.910 17.632 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.102 4.102 3 C 0.143 3.857 4 N -0.316 5.316 5 C -0.400 4.400 6 H 0.093 0.907 7 C -0.235 4.235 8 N -0.544 5.544 9 Si 0.768 3.232 10 H -0.211 1.211 11 H -0.233 1.233 12 H -0.202 1.202 13 C -0.008 4.008 14 C 0.041 3.959 15 H 0.065 0.935 16 O -0.360 6.360 17 C -0.141 4.141 18 C -0.064 4.064 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.146 4.146 22 C -0.074 4.074 23 Cl -0.052 7.052 24 C -0.149 4.149 25 H 0.220 0.780 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.218 0.782 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.067 7.310 16.993 18.529 hybrid contribution 0.075 0.361 -1.258 1.311 sum -0.992 7.671 15.735 17.533 Atomic orbital electron populations 1.24597 0.96075 1.04482 1.07949 1.24359 0.95610 0.96397 0.93818 1.18011 0.82837 0.86034 0.98820 1.44447 1.73732 1.10848 1.02618 1.19369 1.40423 0.95889 0.84333 0.90739 1.25304 0.98819 0.99529 0.99801 1.70490 1.27940 1.29621 1.26362 0.85710 0.79586 0.77796 0.80141 1.21124 1.23290 1.20216 1.21805 0.95142 0.96444 0.87428 1.22436 0.90580 0.89337 0.93550 0.93531 1.86753 1.40769 1.45775 1.62722 1.21334 0.95161 0.99069 0.98503 1.19933 0.97707 0.93007 0.95792 1.21408 0.94189 1.00424 0.96356 1.21442 0.97857 0.93302 0.99998 1.21271 0.99429 0.96901 0.97028 1.21052 0.98636 0.87414 1.00267 1.98351 1.96246 1.23261 1.87376 1.21090 0.97793 0.95061 1.00965 0.78025 0.91907 0.91306 0.94464 0.91807 0.90441 0.78204 0.89419 0.87817 0.83687 0.82565 0.83681 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.71 19.05 74.32 1.42 -13.29 16 2 C -0.10 -4.80 9.80 31.13 0.31 -4.49 16 3 C 0.27 12.27 5.40 84.57 0.46 12.73 16 4 N -0.60 -27.32 2.47 -712.55 -1.76 -29.09 16 5 C -0.27 -14.29 9.60 84.03 0.81 -13.49 16 6 H 0.07 3.90 8.02 -2.91 -0.02 3.88 16 7 C -0.04 -2.06 4.87 84.86 0.41 -1.65 16 8 N -0.90 -51.90 9.35 21.65 0.20 -51.70 16 9 Si 0.94 44.32 29.67 68.60 2.04 46.36 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.12 3.99 5.36 86.38 0.46 4.46 16 14 C 0.10 3.29 3.20 30.59 0.10 3.39 16 15 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 16 O -0.56 -18.41 10.47 -148.98 -1.56 -19.97 16 17 C -0.10 -2.32 5.03 29.85 0.15 -2.17 16 18 C -0.06 -1.56 4.97 -19.87 -0.10 -1.66 16 19 C -0.11 -2.24 9.40 22.27 0.21 -2.04 16 20 C -0.11 -2.10 10.04 22.26 0.22 -1.88 16 21 C -0.13 -2.75 9.83 22.29 0.22 -2.53 16 22 C -0.05 -1.19 6.32 22.32 0.14 -1.05 16 23 Cl -0.08 -1.96 28.96 -2.72 -0.08 -2.04 16 24 C -0.13 -3.45 9.49 22.29 0.21 -3.24 16 25 H 0.20 8.28 7.80 -4.41 -0.03 8.24 16 26 H 0.06 3.28 6.15 -2.38 -0.01 3.26 16 27 H 0.07 2.59 7.83 -2.39 -0.02 2.57 16 28 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 29 H 0.06 2.08 8.04 -2.38 -0.02 2.07 16 30 H 0.08 2.12 7.86 -2.39 -0.02 2.10 16 31 H 0.37 9.18 9.05 -74.05 -0.67 8.51 16 32 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 33 H 0.10 1.75 8.09 -2.39 -0.02 1.73 16 34 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -66.54 334.18 4.25 -62.29 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.40 Total: 21.04 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 5.01 Total: -26.90 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.56 Total: -80.78 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -1.56 Total: -19.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.04 Total: 46.36 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -66.54 4.25 -62.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286695547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.941 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds