Wall clock time and date at job start Tue Mar 31 2020 07:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47212 * 55.04674 * 3 2 1 5 5 C 1.36938 * 120.00264 * 263.92642 * 4 3 2 6 6 H 1.08003 * 119.99703 * 199.38596 * 5 4 3 7 7 C 1.38810 * 119.99962 * 19.39000 * 5 4 3 8 8 N 1.31615 * 120.00153 * 22.27753 * 7 5 4 9 9 Si 1.86804 * 119.99774 * 202.27827 * 7 5 4 10 10 H 1.48500 * 109.46898 * 60.00408 * 9 7 5 11 11 H 1.48508 * 109.46821 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47216 * 299.99723 * 9 7 5 13 13 C 1.46502 * 119.99667 * 83.92955 * 4 3 2 14 14 C 1.53000 * 109.47495 * 90.00113 * 13 4 3 15 15 H 1.08997 * 109.47348 * 59.99628 * 14 13 4 16 16 O 1.42904 * 109.46719 * 300.00054 * 14 13 4 17 17 C 1.52992 * 109.47340 * 180.02562 * 14 13 4 18 18 C 1.50705 * 109.47179 * 184.99708 * 17 14 13 19 19 C 1.38261 * 119.98940 * 89.99956 * 18 17 14 20 20 C 1.38220 * 120.02286 * 179.72396 * 19 18 17 21 21 C 1.38237 * 120.01540 * 0.27754 * 20 19 18 22 22 C 1.38332 * 119.98516 * 359.97438 * 21 20 19 23 23 Cl 1.73604 * 120.01319 * 179.97438 * 22 21 20 24 24 C 1.38191 * 119.99393 * 270.27447 * 18 17 14 25 25 H 4.40642 * 5.51431 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47201 * 295.05150 * 3 2 1 27 27 H 1.08999 * 109.47594 * 175.05000 * 3 2 1 28 28 H 0.97002 * 120.00415 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.47126 * 329.99604 * 13 4 3 30 30 H 1.09004 * 109.47134 * 210.00121 * 13 4 3 31 31 H 0.96699 * 113.99630 * 299.99690 * 16 14 13 32 32 H 1.09000 * 109.47454 * 65.00016 * 17 14 13 33 33 H 1.09000 * 109.47355 * 304.99571 * 17 14 13 34 34 H 1.07997 * 119.99156 * 0.02562 * 19 18 17 35 35 H 1.07999 * 119.99410 * 180.29531 * 20 19 18 36 36 H 1.08001 * 120.00838 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.00553 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7904 -1.1321 5 6 3.4818 -2.1027 -0.9513 6 1 4.1205 -2.5961 -1.6691 7 6 3.0128 -2.7987 0.1543 8 7 1.9282 -2.3900 0.7778 9 14 3.9212 -4.3156 0.7572 10 1 5.3104 -3.9454 1.1292 11 1 3.2229 -4.8715 1.9442 12 1 3.9526 -5.3353 -0.3218 13 6 3.2521 -0.1775 -2.4575 14 6 4.6451 0.4354 -2.6146 15 1 5.3993 -0.3440 -2.5066 16 8 4.8429 1.4320 -1.6097 17 6 4.7674 1.0760 -3.9985 18 6 6.1764 1.5712 -4.2001 19 6 7.1290 0.7376 -4.7564 20 6 8.4200 1.1930 -4.9469 21 6 8.7611 2.4802 -4.5759 22 6 7.8098 3.3129 -4.0145 23 17 8.2374 4.9294 -3.5478 24 6 6.5175 2.8564 -3.8237 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.4343 0.9310 27 1 3.0089 1.0246 -0.0887 28 1 1.6002 -2.8766 1.5502 29 1 2.4978 0.6019 -2.5655 30 1 3.1011 -0.9377 -3.2240 31 1 4.2058 2.1585 -1.6456 32 1 4.0738 1.9134 -4.0739 33 1 4.5292 0.3369 -4.7634 34 1 6.8630 -0.2680 -5.0467 35 1 9.1625 0.5430 -5.3858 36 1 9.7700 2.8358 -4.7244 37 1 5.7743 3.5060 -3.3854 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286695551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:32 Heat of formation + Delta-G solvation = 25.316447 kcal Electronic energy + Delta-G solvation = -20598.615999 eV Core-core repulsion = 17368.289339 eV Total energy + Delta-G solvation = -3230.326660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48417 -38.89539 -37.42316 -36.84570 -33.76331 -33.44861 -32.95300 -31.62365 -30.26497 -27.92666 -27.19817 -24.20001 -23.56421 -22.40115 -21.92291 -19.30858 -18.36212 -17.85882 -17.08871 -16.85195 -16.63113 -16.24544 -15.92538 -15.57693 -15.43702 -14.93892 -14.61868 -14.46232 -14.11500 -13.88075 -13.37940 -13.07996 -12.84083 -12.70217 -12.46271 -12.42421 -12.35396 -12.16862 -12.10740 -12.03159 -11.78930 -11.62334 -11.22640 -10.75325 -10.52780 -10.29968 -9.76137 -9.55086 -8.76110 -7.79979 -5.21764 0.25819 0.39532 1.20070 1.46836 1.51289 1.56203 2.34870 2.54470 2.61402 2.72566 3.30385 3.61309 3.82357 3.87493 3.96618 4.15430 4.20941 4.25937 4.36635 4.43655 4.48812 4.58684 4.69152 4.88854 4.94498 5.02079 5.08689 5.14675 5.31824 5.33597 5.38384 5.45056 5.66488 5.67516 5.71117 5.93882 6.32846 7.06341 7.14145 7.38651 7.88432 8.31150 9.20313 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019401 B = 0.003753 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.843576 B = 7458.995314 C = 8165.300794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.133 4.133 3 C 0.278 3.722 4 N -0.592 5.592 5 C -0.269 4.269 6 H 0.073 0.927 7 C -0.045 4.045 8 N -0.912 5.912 9 Si 0.954 3.046 10 H -0.284 1.284 11 H -0.299 1.299 12 H -0.277 1.277 13 C 0.119 3.881 14 C 0.110 3.890 15 H 0.071 0.929 16 O -0.564 6.564 17 C -0.104 4.104 18 C -0.064 4.064 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.047 4.047 23 Cl -0.078 7.078 24 C -0.107 4.107 25 H 0.220 0.780 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.245 0.755 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.375 0.625 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.976 11.423 -12.637 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.136 4.136 3 C 0.152 3.848 4 N -0.312 5.312 5 C -0.398 4.398 6 H 0.090 0.910 7 C -0.241 4.241 8 N -0.557 5.557 9 Si 0.783 3.217 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.007 4.007 14 C 0.048 3.952 15 H 0.089 0.911 16 O -0.370 6.370 17 C -0.142 4.142 18 C -0.065 4.065 19 C -0.143 4.143 20 C -0.126 4.126 21 C -0.145 4.145 22 C -0.073 4.073 23 Cl -0.050 7.050 24 C -0.126 4.126 25 H 0.237 0.763 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.223 0.777 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.456 11.080 -12.308 19.585 hybrid contribution -0.493 -0.641 0.619 1.019 sum 9.962 10.439 -11.689 18.570 Atomic orbital electron populations 1.24990 0.96358 1.06633 1.03584 1.24841 0.96285 0.95015 0.97459 1.17591 0.82295 0.93436 0.91462 1.43976 1.74832 1.08126 1.04267 1.19396 1.23544 0.88448 1.08455 0.90960 1.25522 0.96892 1.00704 1.01015 1.70273 1.20673 1.42290 1.22450 0.85548 0.78385 0.80266 0.77484 1.21003 1.22558 1.20301 1.21634 0.95367 0.96865 0.86851 1.22384 0.97762 0.89315 0.85704 0.91057 1.86610 1.58195 1.36453 1.55768 1.21300 0.92805 1.02091 0.98024 1.19861 0.96569 0.93077 0.96967 1.21467 0.93425 1.00381 0.99051 1.21384 0.96845 0.95217 0.99162 1.21273 0.99621 0.94057 0.99591 1.21077 0.95601 0.87134 1.03514 1.98356 1.93428 1.22094 1.91079 1.21022 0.95074 0.96469 1.00050 0.76303 0.92851 0.91251 0.94561 0.92867 0.92790 0.77738 0.89054 0.88648 0.84313 0.82808 0.83703 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.20 19.25 74.32 1.43 -11.77 16 2 C -0.13 -6.41 11.50 31.12 0.36 -6.06 16 3 C 0.28 13.10 5.20 84.57 0.44 13.54 16 4 N -0.59 -27.87 2.41 -712.55 -1.72 -29.59 16 5 C -0.27 -14.21 9.63 84.03 0.81 -13.40 16 6 H 0.07 3.71 7.92 -2.91 -0.02 3.69 16 7 C -0.04 -2.46 4.82 84.86 0.41 -2.05 16 8 N -0.91 -52.73 9.61 21.65 0.21 -52.52 16 9 Si 0.95 44.72 29.61 68.60 2.03 46.76 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.12 4.29 5.37 86.38 0.46 4.75 16 14 C 0.11 3.30 3.23 30.59 0.10 3.40 16 15 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 16 O -0.56 -17.61 11.45 -148.98 -1.71 -19.32 16 17 C -0.10 -2.27 5.03 29.85 0.15 -2.12 16 18 C -0.06 -1.45 4.97 -19.87 -0.10 -1.55 16 19 C -0.13 -2.59 9.70 22.27 0.22 -2.38 16 20 C -0.11 -1.98 10.05 22.27 0.22 -1.76 16 21 C -0.13 -2.48 9.83 22.29 0.22 -2.26 16 22 C -0.05 -1.04 6.32 22.32 0.14 -0.90 16 23 Cl -0.08 -1.64 28.96 -2.72 -0.08 -1.72 16 24 C -0.11 -2.45 9.17 22.29 0.20 -2.25 16 25 H 0.22 7.91 7.80 -4.42 -0.03 7.87 16 26 H 0.05 2.88 6.59 -2.39 -0.02 2.87 16 27 H 0.07 2.81 6.80 -2.39 -0.02 2.80 16 28 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 30 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 31 H 0.37 9.02 8.82 -74.06 -0.65 8.37 16 32 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 33 H 0.10 1.85 8.09 -2.39 -0.02 1.83 16 34 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -65.22 336.31 4.22 -61.00 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.42 Total: 20.18 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 5.06 Total: -24.78 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.51 Total: -82.11 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.71 Total: -19.32 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -65.22 4.22 -61.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286695551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.313 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds