Wall clock time and date at job start Tue Mar 31 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47624 * 2 1 4 4 N 1.29024 * 124.91864 * 90.27406 * 3 2 1 5 5 C 1.31788 * 117.12365 * 180.22767 * 4 3 2 6 6 C 1.50704 * 122.74677 * 179.75253 * 5 4 3 7 7 C 1.50700 * 109.47155 * 304.71133 * 6 5 4 8 8 N 1.29942 * 126.28944 * 270.02624 * 7 6 5 9 9 O 1.21306 * 110.25137 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81154 * 359.97438 * 9 8 7 11 11 C 1.50691 * 126.55129 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47367 * 269.95883 * 11 10 9 13 13 C 1.50700 * 109.47366 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00136 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99440 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46999 * 90.00170 * 17 15 13 19 19 H 1.48507 * 109.47068 * 209.99815 * 17 15 13 20 20 H 1.48497 * 109.47400 * 330.00022 * 17 15 13 21 21 N 1.31138 * 106.89453 * 0.02562 * 10 9 8 22 22 C 1.33637 * 114.49963 * 359.49180 * 5 4 3 23 23 S 1.70982 * 124.91597 * 269.97738 * 3 2 1 24 24 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47008 * 300.00594 * 1 2 3 26 26 H 1.09007 * 109.47013 * 60.00128 * 1 2 3 27 27 H 1.08996 * 109.47008 * 239.99406 * 2 1 3 28 28 H 1.09007 * 109.47013 * 119.99872 * 2 1 3 29 29 H 1.08999 * 109.46727 * 184.71457 * 6 5 4 30 30 H 1.09002 * 109.46931 * 64.71293 * 6 5 4 31 31 H 1.09001 * 109.47255 * 29.96194 * 11 10 9 32 32 H 1.09000 * 109.47143 * 149.95492 * 11 10 9 33 33 H 1.09001 * 109.47188 * 300.00353 * 12 11 10 34 34 H 1.09000 * 109.47308 * 59.99710 * 12 11 10 35 35 H 0.97000 * 119.99435 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.03429 * 180.26696 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2835 2.1153 1.0579 5 6 2.7136 3.3481 0.8792 6 6 3.0396 4.2718 2.0245 7 6 1.8443 4.3840 2.9354 8 7 0.8853 5.2558 2.8420 9 8 0.0720 5.0816 3.7250 10 6 0.4461 4.0504 4.4884 11 6 -0.2877 3.5093 5.6881 12 6 0.1995 4.2250 6.9495 13 6 -0.5339 3.6835 8.1495 14 1 -1.2739 2.9068 8.0249 15 6 -0.2611 4.1803 9.4064 16 7 0.6397 5.1265 9.5580 17 14 -1.1707 3.5095 10.8936 18 1 -0.4186 2.3594 11.4565 19 1 -1.2902 4.5739 11.9223 20 1 -2.5262 3.0620 10.4845 21 7 1.5738 3.5994 3.9937 22 6 2.8422 3.7102 -0.4007 23 16 2.3593 2.3432 -1.4020 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2934 5.2578 1.6351 30 1 3.8862 3.8729 2.5833 31 1 -1.3578 3.6769 5.5656 32 1 -0.0957 2.4403 5.7798 33 1 1.2695 4.0575 7.0721 34 1 0.0074 5.2941 6.8578 35 1 0.8319 5.4758 10.4423 36 1 3.1821 4.6709 -0.7582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291074904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:17 Heat of formation + Delta-G solvation = 89.512156 kcal Electronic energy + Delta-G solvation = -20076.142121 eV Core-core repulsion = 16882.935654 eV Total energy + Delta-G solvation = -3193.206468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.04331 -40.14762 -35.77671 -34.81423 -34.16476 -32.63255 -31.13508 -29.97708 -28.17119 -25.81356 -25.60852 -23.36746 -22.47161 -21.72534 -20.45668 -19.91509 -17.91490 -17.46424 -16.93182 -16.34500 -15.76611 -15.13540 -14.70891 -14.55094 -14.29809 -14.12287 -13.86435 -13.31313 -13.16167 -12.77993 -12.42105 -12.37508 -11.95747 -11.89419 -11.73602 -11.49422 -11.39309 -10.99668 -10.95752 -10.68614 -10.48404 -10.08847 -9.99077 -9.74871 -9.60385 -9.30095 -9.13140 -8.95089 -8.42814 -6.07269 -4.11686 0.48523 1.13082 1.46358 1.69778 2.52211 2.77553 3.30463 3.36350 3.38820 3.44785 3.78068 4.05067 4.37802 4.43902 4.59550 4.81570 4.91996 4.93183 5.11944 5.27245 5.29375 5.34344 5.40185 5.53367 5.66827 5.76919 5.86588 5.96249 6.06134 6.20601 6.30031 6.51498 6.67570 7.52290 7.59701 7.60139 7.88681 8.24474 8.66573 8.93602 9.52980 11.04074 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.003056 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.169225 B = 9159.906375 C = 9831.833919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.057 3.943 4 N -0.452 5.452 5 C 0.078 3.922 6 C 0.050 3.950 7 C 0.174 3.826 8 N -0.399 5.399 9 O 0.067 5.933 10 C 0.211 3.789 11 C -0.027 4.027 12 C 0.028 3.972 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 N -0.479 5.479 22 C -0.252 4.252 23 S 0.108 5.892 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.027 0.973 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -6.663 -22.825 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.222 4.222 4 N -0.166 5.166 5 C -0.055 4.055 6 C 0.008 3.992 7 C -0.100 4.100 8 N -0.110 5.110 9 O 0.010 5.990 10 C -0.008 4.008 11 C -0.066 4.066 12 C -0.010 4.010 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 N -0.212 5.212 22 C -0.391 4.391 23 S 0.363 5.637 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.756 -6.631 -23.913 25.097 hybrid contribution -0.241 0.420 1.660 1.729 sum 3.514 -6.211 -22.252 23.369 Atomic orbital electron populations 1.21768 0.93374 1.02677 1.02754 1.20245 0.96857 0.87401 1.04333 1.27163 1.02609 1.01916 0.90510 1.66089 1.13738 1.05499 1.31236 1.19901 1.00880 0.91301 0.93381 1.18353 0.92491 0.98356 0.89953 1.25203 0.98102 0.90964 0.95722 1.74523 1.02974 1.23605 1.09902 1.85254 1.40540 1.43009 1.30173 1.29623 0.91192 0.84932 0.95093 1.20721 0.98059 1.01141 0.86715 1.19152 0.97586 0.95725 0.88548 1.21078 1.22508 1.21460 0.91274 0.92051 1.25014 0.95191 0.94895 0.99172 1.69971 1.32483 1.27247 1.23300 0.86508 0.80144 0.78595 0.82259 1.20555 1.21197 1.19702 1.71945 1.13366 1.26648 1.09209 1.26795 1.12384 1.04435 0.95520 1.83870 1.60716 1.05915 1.13216 0.91212 0.91798 0.92524 0.89679 0.88470 0.87576 0.86907 0.89266 0.88269 0.95501 0.95830 0.92779 0.80325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.41 6.52 -27.89 -0.18 -0.59 16 3 C 0.06 0.66 6.64 -13.46 -0.09 0.57 16 4 N -0.45 -6.59 10.39 -8.06 -0.08 -6.67 16 5 C 0.08 1.05 6.06 -84.22 -0.51 0.54 16 6 C 0.05 0.68 6.34 -29.03 -0.18 0.49 16 7 C 0.17 3.12 7.35 -156.38 -1.15 1.98 16 8 N -0.40 -7.58 12.16 30.90 0.38 -7.20 16 9 O 0.07 1.32 11.31 18.09 0.20 1.52 16 10 C 0.21 4.22 7.77 -13.05 -0.10 4.12 16 11 C -0.03 -0.54 5.78 -27.89 -0.16 -0.71 16 12 C 0.03 0.71 4.95 -27.89 -0.14 0.57 16 13 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 N -0.48 -9.65 11.55 -9.87 -0.11 -9.77 16 22 C -0.25 -2.66 11.07 29.12 0.32 -2.34 16 23 S 0.11 1.01 23.18 -107.50 -2.49 -1.49 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.13 8.03 -51.93 -0.42 0.72 16 30 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -32.48 333.24 -8.22 -40.69 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.61 Total: -3.33 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.24 Total: -9.21 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.91 Total: -49.27 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.48 -8.22 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291074904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.207 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds