Wall clock time and date at job start Tue Mar 31 2020 07:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47624 * 2 1 4 4 N 1.29024 * 124.91864 * 90.27406 * 3 2 1 5 5 C 1.31788 * 117.12365 * 180.22767 * 4 3 2 6 6 C 1.50704 * 122.74677 * 179.75253 * 5 4 3 7 7 C 1.50700 * 109.47155 * 304.71133 * 6 5 4 8 8 N 1.29942 * 126.28944 * 270.02624 * 7 6 5 9 9 O 1.21306 * 110.25137 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.81154 * 359.97438 * 9 8 7 11 11 C 1.50691 * 126.55129 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47367 * 269.95883 * 11 10 9 13 13 C 1.50700 * 109.47366 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00178 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00136 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99440 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46999 * 90.00170 * 17 15 13 19 19 H 1.48507 * 109.47068 * 209.99815 * 17 15 13 20 20 H 1.48497 * 109.47400 * 330.00022 * 17 15 13 21 21 N 1.31138 * 106.89453 * 0.02562 * 10 9 8 22 22 C 1.33637 * 114.49963 * 359.49180 * 5 4 3 23 23 S 1.70982 * 124.91597 * 269.97738 * 3 2 1 24 24 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47008 * 300.00594 * 1 2 3 26 26 H 1.09007 * 109.47013 * 60.00128 * 1 2 3 27 27 H 1.08996 * 109.47008 * 239.99406 * 2 1 3 28 28 H 1.09007 * 109.47013 * 119.99872 * 2 1 3 29 29 H 1.08999 * 109.46727 * 184.71457 * 6 5 4 30 30 H 1.09002 * 109.46931 * 64.71293 * 6 5 4 31 31 H 1.09001 * 109.47255 * 29.96194 * 11 10 9 32 32 H 1.09000 * 109.47143 * 149.95492 * 11 10 9 33 33 H 1.09001 * 109.47188 * 300.00353 * 12 11 10 34 34 H 1.09000 * 109.47308 * 59.99710 * 12 11 10 35 35 H 0.97000 * 119.99435 * 180.02562 * 16 15 13 36 36 H 1.07997 * 126.03429 * 180.26696 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2835 2.1153 1.0579 5 6 2.7136 3.3481 0.8792 6 6 3.0396 4.2718 2.0245 7 6 1.8443 4.3840 2.9354 8 7 0.8853 5.2558 2.8420 9 8 0.0720 5.0816 3.7250 10 6 0.4461 4.0504 4.4884 11 6 -0.2877 3.5093 5.6881 12 6 0.1995 4.2250 6.9495 13 6 -0.5339 3.6835 8.1495 14 1 -1.2739 2.9068 8.0249 15 6 -0.2611 4.1803 9.4064 16 7 0.6397 5.1265 9.5580 17 14 -1.1707 3.5095 10.8936 18 1 -0.4186 2.3594 11.4565 19 1 -1.2902 4.5739 11.9223 20 1 -2.5262 3.0620 10.4845 21 7 1.5738 3.5994 3.9937 22 6 2.8422 3.7102 -0.4007 23 16 2.3593 2.3432 -1.4020 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.2934 5.2578 1.6351 30 1 3.8862 3.8729 2.5833 31 1 -1.3578 3.6769 5.5656 32 1 -0.0957 2.4403 5.7798 33 1 1.2695 4.0575 7.0721 34 1 0.0074 5.2941 6.8578 35 1 0.8319 5.4758 10.4423 36 1 3.1821 4.6709 -0.7582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291074904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:16 Heat of formation + Delta-G solvation = 68.173240 kcal Electronic energy + Delta-G solvation = -20077.067446 eV Core-core repulsion = 16882.935654 eV Total energy + Delta-G solvation = -3194.131793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.54311 -41.02369 -37.19675 -36.40369 -35.25151 -34.37665 -32.47094 -31.44851 -29.16432 -27.74220 -26.40887 -24.86521 -23.97664 -22.91965 -21.95987 -20.76735 -19.21917 -18.74078 -18.50510 -18.16480 -16.60232 -16.49846 -16.14020 -15.84342 -15.43112 -15.27852 -15.03355 -14.65039 -14.33881 -14.06953 -13.86311 -13.48191 -13.38381 -13.10147 -12.82552 -12.80923 -12.63674 -12.58529 -12.27655 -12.06138 -12.05339 -11.91534 -11.80224 -11.34601 -10.78651 -10.58554 -10.56659 -10.41939 -9.76168 -8.20283 -6.32426 -0.33037 0.12146 0.37473 0.66573 1.25629 1.46005 1.47189 1.58333 1.66070 1.87447 2.44022 2.75813 2.94125 3.10867 3.14976 3.76959 3.99094 4.08436 4.16170 4.26675 4.27681 4.38514 4.43693 4.52565 4.59012 4.65089 4.76030 4.92241 4.93903 4.97994 5.02686 5.08453 5.26279 5.42633 5.52832 5.77426 6.13267 6.77125 6.82865 7.14557 7.37569 8.92298 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.003056 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.169225 B = 9159.906375 C = 9831.833919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.036 3.964 4 N -0.499 5.499 5 C 0.048 3.952 6 C 0.048 3.952 7 C 0.180 3.820 8 N -0.408 5.408 9 O 0.056 5.944 10 C 0.204 3.796 11 C -0.012 4.012 12 C 0.036 3.964 13 C -0.539 4.539 14 H 0.077 0.923 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.256 1.256 21 N -0.499 5.499 22 C -0.247 4.247 23 S 0.169 5.831 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.109 0.891 33 H -0.007 1.007 34 H -0.002 1.002 35 H 0.264 0.736 36 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -7.718 -24.520 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.242 4.242 4 N -0.214 5.214 5 C -0.085 4.085 6 C 0.007 3.993 7 C -0.093 4.093 8 N -0.121 5.121 9 O 0.003 5.997 10 C -0.015 4.015 11 C -0.051 4.051 12 C -0.003 4.003 13 C -0.577 4.577 14 H 0.095 0.905 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.180 1.180 21 N -0.233 5.233 22 C -0.387 4.387 23 S 0.425 5.575 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.012 0.988 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.197 -7.698 -25.623 26.944 hybrid contribution -0.011 0.751 2.041 2.175 sum 3.186 -6.947 -23.582 24.789 Atomic orbital electron populations 1.21742 0.93264 1.03626 1.01526 1.20387 0.96869 0.86333 1.05351 1.27600 1.02412 1.02980 0.91182 1.66070 1.15400 1.06532 1.33371 1.19869 1.03176 0.91359 0.94092 1.18617 0.90592 1.00313 0.89758 1.25974 0.98704 0.89498 0.95149 1.74502 1.03384 1.24187 1.10028 1.85231 1.41049 1.42966 1.30471 1.29536 0.91424 0.85247 0.95324 1.20477 0.99233 1.00917 0.84501 1.18930 0.95592 0.94765 0.90965 1.21563 1.22639 1.21559 0.91959 0.90452 1.26015 0.96017 0.95101 1.02706 1.70120 1.34340 1.28912 1.24111 0.85354 0.79370 0.77792 0.77976 1.19939 1.21190 1.18000 1.71959 1.13481 1.27573 1.10239 1.27197 1.10491 1.05980 0.94998 1.83611 1.58959 1.04060 1.10871 0.89204 0.94822 0.91824 0.86683 0.89419 0.84702 0.86734 0.86873 0.87232 0.98830 0.98350 0.92734 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.05 -0.78 6.52 29.85 0.19 -0.59 16 3 C 0.04 0.79 6.64 88.52 0.59 1.38 16 4 N -0.50 -14.40 10.39 -179.40 -1.86 -16.27 16 5 C 0.05 1.23 6.06 41.52 0.25 1.48 16 6 C 0.05 1.28 6.34 29.10 0.18 1.46 16 7 C 0.18 6.52 7.35 138.46 1.02 7.54 16 8 N -0.41 -15.54 12.16 -60.30 -0.73 -16.28 16 9 O 0.06 2.25 11.31 74.81 0.85 3.09 16 10 C 0.20 8.33 7.77 88.38 0.69 9.02 16 11 C -0.01 -0.50 5.78 29.84 0.17 -0.33 16 12 C 0.04 1.85 4.95 29.85 0.15 2.00 16 13 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 14 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 15 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 16 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 17 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 N -0.50 -20.51 11.55 -303.18 -3.50 -24.01 16 22 C -0.25 -4.64 11.07 66.78 0.74 -3.90 16 23 S 0.17 2.72 23.18 -56.49 -1.31 1.41 16 24 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.13 2.66 8.03 -2.39 -0.02 2.64 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 32 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -71.57 333.24 2.23 -69.34 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.09 Total: 5.96 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 5.39 Total: -12.11 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -5.82 Total: -112.81 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.85 Total: 3.09 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Total: -71.57 2.23 -69.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291074904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.515 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds