Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38641 * 120.40588 * 2 1 4 4 C 1.38587 * 118.53392 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.40618 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49681 * 275.00006 * 5 4 3 7 7 C 1.53002 * 60.02940 * 107.47810 * 6 5 4 8 8 N 1.32286 * 119.18792 * 0.25457 * 4 3 2 9 9 C 1.32393 * 120.75142 * 359.48784 * 8 4 3 10 10 N 1.38934 * 119.20725 * 180.24460 * 9 8 4 11 11 C 1.34779 * 120.00261 * 180.27900 * 10 9 8 12 12 O 1.21261 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99903 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47033 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00330 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99820 * 0.02562 * 15 14 13 17 17 C 1.38790 * 120.00417 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47080 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46980 * 120.00297 * 19 17 15 22 22 H 1.48501 * 109.47404 * 240.00290 * 19 17 15 23 23 N 1.32255 * 120.40763 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47529 * 89.99916 * 1 2 3 25 25 H 1.09007 * 109.46842 * 209.99558 * 1 2 3 26 26 H 1.08995 * 109.47136 * 329.99622 * 1 2 3 27 27 H 1.08002 * 120.73072 * 359.96128 * 3 2 1 28 28 H 1.08999 * 115.56047 * 129.31453 * 5 4 3 29 29 H 1.09002 * 117.49833 * 214.97915 * 6 5 4 30 30 H 1.09002 * 117.49953 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49996 * 107.50493 * 7 6 5 32 32 H 1.08999 * 117.49664 * 252.51862 * 7 6 5 33 33 H 0.97004 * 119.99593 * 0.26851 * 10 9 8 34 34 H 1.09006 * 109.46544 * 299.99132 * 13 11 10 35 35 H 1.08995 * 109.47651 * 59.99351 * 13 11 10 36 36 H 0.96998 * 120.00510 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1957 0.0000 4 6 3.5938 1.1505 0.0005 5 6 4.3987 2.4246 0.0000 6 6 4.6764 3.0841 -1.3524 7 6 3.6749 3.7174 -0.3845 8 7 4.2009 -0.0249 -0.0041 9 6 3.5007 -1.1485 0.0010 10 7 4.1713 -2.3652 0.0010 11 6 3.4744 -3.5189 0.0005 12 8 2.2620 -3.4948 0.0004 13 6 4.2019 -4.8387 0.0011 14 16 2.9987 -6.1908 0.0009 15 6 4.0915 -7.5729 0.0010 16 1 5.1601 -7.4164 0.0015 17 6 3.5791 -8.8628 0.0014 18 7 2.2767 -9.0537 0.0012 19 14 4.7377 -10.3281 0.0007 20 1 6.1430 -9.8480 0.0004 21 1 4.4963 -11.1505 1.2134 22 1 4.4950 -11.1506 -1.2116 23 7 2.1764 -1.1406 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6874 2.1416 -0.0006 28 1 5.1763 2.4900 0.7610 29 1 5.6367 3.5835 -1.4810 30 1 4.2774 2.5962 -2.2417 31 1 3.9762 4.6335 0.1236 32 1 2.6169 3.6459 -0.6369 33 1 5.1412 -2.3844 0.0014 34 1 4.8280 -4.9088 -0.8885 35 1 4.8266 -4.9088 0.8915 36 1 1.9186 -9.9551 0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291722347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = 51.728664 kcal Electronic energy + Delta-G solvation = -19891.054333 eV Core-core repulsion = 16696.209450 eV Total energy + Delta-G solvation = -3194.844883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40040 -39.25355 -37.55780 -35.10946 -33.82733 -32.45375 -31.55833 -29.25017 -28.44982 -25.55420 -25.18732 -23.33724 -22.58266 -21.58164 -20.01075 -18.30757 -17.51623 -17.37236 -16.34227 -15.95849 -15.84800 -15.39265 -14.82523 -14.67853 -14.46832 -14.13317 -13.51396 -13.30487 -13.21404 -12.68342 -12.61008 -12.27801 -12.12910 -11.94245 -11.41590 -11.10596 -11.08155 -11.01445 -10.87237 -10.77778 -10.49474 -10.14996 -9.85240 -9.62183 -9.09693 -8.91090 -8.61698 -8.28844 -6.54204 -6.24264 -3.95565 0.91149 1.03872 2.48974 2.91557 3.20392 3.20820 3.29349 3.34978 3.47332 3.77046 3.91168 4.13911 4.18040 4.41287 4.48201 4.66798 4.80298 4.95202 5.07010 5.11286 5.14231 5.24949 5.28036 5.45063 5.48568 5.54674 5.62905 5.69846 5.78663 5.79666 5.83520 6.05438 6.11325 6.56211 7.06378 7.18547 7.57972 8.22562 8.33069 8.45843 9.21285 10.83215 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.002904 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.040878 B = 9640.673306 C =10322.297146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.207 3.793 3 C -0.269 4.269 4 C 0.236 3.764 5 C -0.111 4.111 6 C -0.158 4.158 7 C -0.169 4.169 8 N -0.555 5.555 9 C 0.553 3.447 10 N -0.644 5.644 11 C 0.523 3.477 12 O -0.441 6.441 13 C -0.150 4.150 14 S -0.054 6.054 15 C -0.536 4.536 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.504 5.504 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.421 0.579 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 24.954 -0.613 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.059 3.941 3 C -0.293 4.293 4 C 0.088 3.912 5 C -0.130 4.130 6 C -0.196 4.196 7 C -0.206 4.206 8 N -0.277 5.277 9 C 0.197 3.803 10 N -0.295 5.295 11 C 0.308 3.692 12 O -0.305 6.305 13 C -0.301 4.301 14 S 0.172 5.828 15 C -0.684 4.684 16 H 0.093 0.907 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.225 5.225 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.144 0.856 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.259 0.741 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.258 23.794 -0.614 23.835 hybrid contribution 2.374 -0.257 0.029 2.388 sum 3.632 23.537 -0.585 23.822 Atomic orbital electron populations 1.20788 0.87628 1.04143 1.03767 1.21731 0.97670 0.87168 0.87546 1.22331 0.95305 1.00421 1.11271 1.20359 0.90545 0.91159 0.89089 1.20784 1.02231 0.88741 1.01210 1.22980 1.01092 1.02561 0.92943 1.23119 0.98745 0.95540 1.03201 1.67464 1.41355 0.97520 1.21318 1.19482 0.85532 0.85767 0.89497 1.43557 1.11207 1.02169 1.72533 1.20678 0.88446 0.83962 0.76140 1.90817 1.12919 1.85688 1.41112 1.23548 1.05148 0.95860 1.05529 1.85442 1.07189 0.93409 1.96754 1.22897 0.94461 0.91997 1.59027 0.90721 1.24999 0.95625 0.98504 0.94470 1.70022 1.11010 1.22387 1.46813 0.86095 0.80229 0.81129 0.77913 1.19577 1.20548 1.20543 1.68405 1.06798 1.29650 1.17693 0.89602 0.89350 0.90253 0.83761 0.85581 0.87863 0.88568 0.87779 0.88048 0.74131 0.88636 0.88628 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.22 36.01 0.37 -0.71 16 2 C 0.21 2.82 6.82 -82.26 -0.56 2.25 16 3 C -0.27 -2.98 9.11 -39.30 -0.36 -3.34 16 4 C 0.24 2.82 6.50 -82.26 -0.53 2.29 16 5 C -0.11 -0.94 6.25 -91.73 -0.57 -1.51 16 6 C -0.16 -1.09 10.23 -26.73 -0.27 -1.37 16 7 C -0.17 -0.98 9.83 -26.69 -0.26 -1.25 16 8 N -0.55 -8.07 10.39 -10.06 -0.10 -8.17 16 9 C 0.55 9.24 8.38 -322.25 -2.70 6.54 16 10 N -0.64 -10.31 5.40 -13.07 -0.07 -10.38 16 11 C 0.52 10.25 7.81 -10.98 -0.09 10.16 16 12 O -0.44 -10.28 14.06 5.57 0.08 -10.20 16 13 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 14 S -0.05 -1.46 20.57 -107.50 -2.21 -3.68 16 15 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.59 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 19 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.50 -8.90 7.81 -10.05 -0.08 -8.98 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.14 1.10 6.38 -52.49 -0.34 0.76 16 28 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.54 6.47 -51.93 -0.34 0.20 16 33 H 0.42 5.28 8.81 -40.82 -0.36 4.92 16 34 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 35 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -35.60 329.64 -10.65 -46.25 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.38 Total: 1.75 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.56 Total: -2.56 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.48 Total: -52.83 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.60 -10.65 -46.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291722347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.978 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds