Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38641 * 120.40588 * 2 1 4 4 C 1.38587 * 118.53392 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.40618 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49681 * 275.00006 * 5 4 3 7 7 C 1.53002 * 60.02940 * 107.47810 * 6 5 4 8 8 N 1.32286 * 119.18792 * 0.25457 * 4 3 2 9 9 C 1.32393 * 120.75142 * 359.48784 * 8 4 3 10 10 N 1.38934 * 119.20725 * 180.24460 * 9 8 4 11 11 C 1.34779 * 120.00261 * 180.27900 * 10 9 8 12 12 O 1.21261 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99903 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47033 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00330 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99820 * 0.02562 * 15 14 13 17 17 C 1.38790 * 120.00417 * 179.97438 * 15 14 13 18 18 N 1.31632 * 120.00155 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47080 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46980 * 120.00297 * 19 17 15 22 22 H 1.48501 * 109.47404 * 240.00290 * 19 17 15 23 23 N 1.32255 * 120.40763 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47529 * 89.99916 * 1 2 3 25 25 H 1.09007 * 109.46842 * 209.99558 * 1 2 3 26 26 H 1.08995 * 109.47136 * 329.99622 * 1 2 3 27 27 H 1.08002 * 120.73072 * 359.96128 * 3 2 1 28 28 H 1.08999 * 115.56047 * 129.31453 * 5 4 3 29 29 H 1.09002 * 117.49833 * 214.97915 * 6 5 4 30 30 H 1.09002 * 117.49953 * 359.97438 * 6 5 4 31 31 H 1.09000 * 117.49996 * 107.50493 * 7 6 5 32 32 H 1.08999 * 117.49664 * 252.51862 * 7 6 5 33 33 H 0.97004 * 119.99593 * 0.26851 * 10 9 8 34 34 H 1.09006 * 109.46544 * 299.99132 * 13 11 10 35 35 H 1.08995 * 109.47651 * 59.99351 * 13 11 10 36 36 H 0.96998 * 120.00510 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1957 0.0000 4 6 3.5938 1.1505 0.0005 5 6 4.3987 2.4246 0.0000 6 6 4.6764 3.0841 -1.3524 7 6 3.6749 3.7174 -0.3845 8 7 4.2009 -0.0249 -0.0041 9 6 3.5007 -1.1485 0.0010 10 7 4.1713 -2.3652 0.0010 11 6 3.4744 -3.5189 0.0005 12 8 2.2620 -3.4948 0.0004 13 6 4.2019 -4.8387 0.0011 14 16 2.9987 -6.1908 0.0009 15 6 4.0915 -7.5729 0.0010 16 1 5.1601 -7.4164 0.0015 17 6 3.5791 -8.8628 0.0014 18 7 2.2767 -9.0537 0.0012 19 14 4.7377 -10.3281 0.0007 20 1 6.1430 -9.8480 0.0004 21 1 4.4963 -11.1505 1.2134 22 1 4.4950 -11.1506 -1.2116 23 7 2.1764 -1.1406 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6874 2.1416 -0.0006 28 1 5.1763 2.4900 0.7610 29 1 5.6367 3.5835 -1.4810 30 1 4.2774 2.5962 -2.2417 31 1 3.9762 4.6335 0.1236 32 1 2.6169 3.6459 -0.6369 33 1 5.1412 -2.3844 0.0014 34 1 4.8280 -4.9088 -0.8885 35 1 4.8266 -4.9088 0.8915 36 1 1.9186 -9.9551 0.0011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291722347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = 29.705747 kcal Electronic energy + Delta-G solvation = -19892.009319 eV Core-core repulsion = 16696.209450 eV Total energy + Delta-G solvation = -3195.799868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49200 -40.63572 -38.27371 -36.36462 -34.90402 -34.59579 -32.72198 -30.73203 -29.39812 -27.70123 -26.10522 -24.35674 -23.15227 -22.71285 -21.09315 -20.00209 -18.89659 -18.65825 -17.45977 -17.16560 -17.01149 -16.89098 -16.26316 -16.11373 -15.77800 -15.25464 -14.99403 -14.54933 -14.33237 -14.16988 -13.65765 -13.38083 -13.18025 -12.96867 -12.92119 -12.62971 -12.47394 -12.35549 -12.03790 -11.74982 -11.61441 -11.42802 -11.16821 -11.12231 -10.93140 -10.31902 -10.07219 -9.73197 -8.69575 -8.36119 -6.14689 -0.17103 0.05191 1.05217 1.39004 1.41467 1.46810 1.54492 1.75474 2.24845 2.63613 2.81916 2.98369 2.98670 3.10829 3.33496 3.53426 3.87460 3.89853 4.03326 4.09908 4.21952 4.22108 4.31773 4.43532 4.47443 4.69192 4.75692 4.79589 4.94250 5.02984 5.11036 5.14717 5.26977 5.41837 5.49591 5.91099 6.09638 6.19304 6.91279 7.05490 7.22244 8.73394 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036025 B = 0.002904 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.040878 B = 9640.673306 C =10322.297146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.184 3.816 3 C -0.249 4.249 4 C 0.224 3.776 5 C -0.131 4.131 6 C -0.159 4.159 7 C -0.145 4.145 8 N -0.559 5.559 9 C 0.527 3.473 10 N -0.630 5.630 11 C 0.530 3.470 12 O -0.487 6.487 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.545 4.545 16 H 0.085 0.915 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.551 5.551 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.186 0.814 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.436 0.564 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 27.390 -0.652 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.038 3.962 3 C -0.272 4.272 4 C 0.078 3.922 5 C -0.150 4.150 6 C -0.197 4.197 7 C -0.182 4.182 8 N -0.281 5.281 9 C 0.171 3.829 10 N -0.282 5.282 11 C 0.315 3.685 12 O -0.355 6.355 13 C -0.275 4.275 14 S 0.085 5.915 15 C -0.693 4.693 16 H 0.104 0.896 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.822 3.178 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.199 1.199 23 N -0.274 5.274 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.203 0.797 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.276 0.724 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.904 26.299 -0.653 26.467 hybrid contribution 1.868 -0.760 0.028 2.017 sum 4.772 25.539 -0.625 25.989 Atomic orbital electron populations 1.20888 0.85693 1.04782 1.04577 1.22357 0.99122 0.87169 0.87589 1.22731 0.95051 1.01076 1.08326 1.21104 0.91647 0.91510 0.87939 1.20873 1.03308 0.88232 1.02571 1.23061 1.02449 1.02335 0.91820 1.23287 0.98946 0.94636 1.01318 1.67526 1.41405 0.97772 1.21434 1.19560 0.85760 0.86235 0.91342 1.43113 1.11725 1.01461 1.71918 1.20464 0.87813 0.84635 0.75558 1.90802 1.14714 1.86389 1.43586 1.23343 1.03182 0.93341 1.07667 1.85622 1.11726 0.97052 1.97084 1.23235 0.94829 0.92383 1.58851 0.89647 1.26136 0.97407 1.01924 0.93715 1.70184 1.13326 1.23263 1.48007 0.84883 0.78232 0.76637 0.78050 1.17974 1.19959 1.19947 1.68334 1.07665 1.32199 1.19176 0.88603 0.91789 0.86451 0.79707 0.85119 0.86367 0.89686 0.85538 0.87123 0.72376 0.86351 0.86349 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.22 71.24 0.73 -1.28 16 2 C 0.18 4.90 6.82 42.59 0.29 5.19 16 3 C -0.25 -4.95 9.11 22.45 0.20 -4.74 16 4 C 0.22 4.99 6.50 42.58 0.28 5.27 16 5 C -0.13 -1.87 6.25 -11.51 -0.07 -1.94 16 6 C -0.16 -1.75 10.23 30.60 0.31 -1.43 16 7 C -0.14 -1.10 9.83 30.62 0.30 -0.79 16 8 N -0.56 -15.97 10.39 -185.73 -1.93 -17.90 16 9 C 0.53 17.83 8.38 261.29 2.19 20.02 16 10 N -0.63 -20.36 5.40 -313.66 -1.69 -22.06 16 11 C 0.53 21.27 7.81 87.66 0.68 21.96 16 12 O -0.49 -23.80 14.06 -2.97 -0.04 -23.84 16 13 C -0.12 -4.99 6.16 71.24 0.44 -4.55 16 14 S -0.14 -7.89 20.57 -56.49 -1.16 -9.06 16 15 C -0.55 -31.04 9.50 67.95 0.65 -30.39 16 16 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 17 C 0.01 0.74 5.49 84.85 0.47 1.20 16 18 N -0.91 -56.05 13.22 21.65 0.29 -55.76 16 19 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 N -0.55 -19.98 7.81 -185.72 -1.45 -21.43 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.12 1.33 8.09 -2.39 -0.02 1.31 16 27 H 0.19 2.01 6.38 -2.91 -0.02 1.99 16 28 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.11 0.64 6.47 -2.39 -0.02 0.63 16 33 H 0.44 10.73 8.81 -92.71 -0.82 9.92 16 34 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 35 H 0.12 4.22 8.14 -2.40 -0.02 4.20 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.42 329.64 2.80 -78.62 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.30 Total: 17.22 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.47 Total: 8.51 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.79 Total: -117.14 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.06 kcal Total: -81.42 2.80 -78.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291722347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.322 kcal (2) G-P(sol) polarization free energy of solvation -81.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds