Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29519 * 121.53255 * 2 1 4 4 S 1.69479 * 107.84287 * 180.22091 * 3 2 1 5 5 C 1.72013 * 96.02751 * 359.76415 * 4 3 2 6 6 C 1.50697 * 127.31603 * 179.97438 * 5 4 3 7 7 C 1.37901 * 105.36746 * 359.97438 * 5 4 3 8 8 C 1.47335 * 123.08814 * 179.97438 * 7 5 4 9 9 O 1.21614 * 120.00157 * 88.10148 * 8 7 5 10 10 N 1.34779 * 120.00028 * 267.82821 * 8 7 5 11 11 C 1.46503 * 119.99416 * 355.43696 * 10 8 7 12 12 C 1.50703 * 109.46968 * 90.00200 * 11 10 8 13 13 H 1.08003 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99893 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47073 * 90.00045 * 16 14 12 18 18 H 1.48493 * 109.47040 * 210.00215 * 16 14 12 19 19 H 1.48510 * 109.47123 * 330.00158 * 16 14 12 20 20 C 1.46498 * 120.00317 * 175.43728 * 10 8 7 21 21 C 1.53001 * 109.46842 * 94.12827 * 20 10 8 22 22 C 1.47203 * 109.46809 * 175.21151 * 21 20 10 23 23 N 7.69416 * 64.96011 * 191.18570 * 2 1 3 24 24 H 1.08998 * 109.47269 * 270.21032 * 1 2 3 25 25 H 1.08994 * 109.46812 * 30.21185 * 1 2 3 26 26 H 1.08999 * 109.46790 * 150.21205 * 1 2 3 27 27 H 1.09001 * 109.47148 * 274.32378 * 6 5 4 28 28 H 1.08996 * 109.47553 * 34.32734 * 6 5 4 29 29 H 1.09003 * 109.47118 * 154.32971 * 6 5 4 30 30 H 1.09008 * 109.46952 * 209.99615 * 11 10 8 31 31 H 1.08992 * 109.47404 * 330.00150 * 11 10 8 32 32 H 0.97000 * 120.00192 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.47362 * 214.12836 * 20 10 8 34 34 H 1.08998 * 109.46906 * 334.13086 * 20 10 8 35 35 H 1.08995 * 109.47151 * 295.20773 * 21 20 10 36 36 H 1.08994 * 109.47162 * 55.21245 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 -0.0062 5 6 3.6018 -1.0019 -0.0019 6 6 4.6677 -2.0671 -0.0048 7 6 2.2352 -1.1868 0.0049 8 6 1.6037 -2.5179 0.0099 9 8 1.3795 -3.0807 1.0644 10 7 1.2693 -3.1095 -1.1540 11 6 1.4413 -2.3888 -2.4179 12 6 2.8185 -2.6593 -2.9669 13 1 3.4975 -3.3039 -2.4285 14 6 3.2112 -2.0846 -4.1571 15 7 2.3843 -1.3000 -4.8130 16 14 4.9185 -2.4192 -4.8372 17 1 4.8756 -3.6156 -5.7158 18 1 5.3776 -1.2451 -5.6219 19 1 5.8597 -2.6630 -3.7146 20 6 0.7338 -4.4731 -1.1554 21 6 -0.7952 -4.4206 -1.1422 22 6 -1.3341 -5.7854 -1.2594 23 7 -1.7495 -6.8386 -1.3523 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8919 -0.5105 27 1 4.9747 -2.2711 -1.0306 28 1 5.5274 -1.7225 0.5700 29 1 4.2722 -2.9783 0.4440 30 1 0.6920 -2.7268 -3.1338 31 1 1.3226 -1.3192 -2.2453 32 1 2.6607 -0.8955 -5.6501 33 1 1.0717 -4.9953 -2.0505 34 1 1.0868 -5.0029 -0.2706 35 1 -1.1354 -3.9747 -0.2076 36 1 -1.1453 -3.8185 -1.9806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292412249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = 19.821685 kcal Electronic energy + Delta-G solvation = -21607.552277 eV Core-core repulsion = 18411.323803 eV Total energy + Delta-G solvation = -3196.228473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01826 -37.90190 -36.64744 -35.27119 -33.10531 -32.70756 -31.21515 -29.34543 -27.83309 -27.23491 -24.37266 -23.29061 -21.85759 -20.24446 -18.10450 -17.59946 -17.48250 -16.64402 -16.25424 -15.66235 -14.74143 -14.61799 -14.35243 -14.22812 -13.90682 -13.43415 -13.11143 -13.01150 -12.77635 -12.46635 -12.36038 -12.26510 -12.17437 -11.96233 -11.83850 -11.71774 -11.49467 -11.10652 -10.89548 -10.78012 -10.72934 -10.37476 -10.23224 -9.88608 -9.40044 -8.85635 -8.65729 -8.18113 -8.01145 -6.27005 -4.33606 1.05885 1.79751 2.14874 2.61589 2.81458 2.91438 3.08913 3.14982 3.23407 3.24402 3.67137 4.23443 4.33676 4.76212 5.07661 5.11385 5.24410 5.31162 5.34500 5.53011 5.56006 5.61204 5.74281 5.84599 5.87655 6.00351 6.11432 6.18348 6.27403 6.36207 6.50526 6.97837 7.05203 7.30991 7.65079 7.67198 7.94388 8.03498 8.61355 8.76009 9.33374 10.80373 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.007929 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.108169 B = 3530.304035 C = 5086.285685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.156 3.844 3 N -0.473 5.473 4 S 0.251 5.749 5 C -0.108 4.108 6 C -0.083 4.083 7 C -0.192 4.192 8 C 0.594 3.406 9 O -0.558 6.558 10 N -0.586 5.586 11 C 0.237 3.763 12 C -0.536 4.536 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.887 5.887 16 Si 0.889 3.111 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.125 3.875 21 C -0.047 4.047 22 C 0.221 3.779 23 N -0.449 5.449 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 1.966 7.090 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 N -0.293 5.293 4 S 0.407 5.593 5 C -0.239 4.239 6 C -0.142 4.142 7 C -0.211 4.211 8 C 0.379 3.621 9 O -0.438 6.438 10 N -0.315 5.315 11 C 0.117 3.883 12 C -0.575 4.575 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.000 4.000 21 C -0.088 4.088 22 C -0.097 4.097 23 N -0.126 5.126 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.161 2.310 7.290 7.649 hybrid contribution 0.329 -1.246 -0.798 1.516 sum 0.490 1.064 6.492 6.597 Atomic orbital electron populations 1.20593 0.86726 1.04117 1.03287 1.21136 0.98543 0.87188 0.95374 1.76285 0.99994 1.26012 1.27045 1.83670 1.10929 0.96372 1.68359 1.25721 0.97189 1.01592 0.99352 1.20402 0.94368 0.95057 1.04361 1.19876 0.92465 0.95460 1.13346 1.17381 0.77164 0.84004 0.83549 1.90732 1.55943 1.65691 1.31386 1.48219 1.60475 1.14411 1.08421 1.19519 0.97689 0.92420 0.78635 1.21384 0.99334 1.30238 1.06510 0.91942 1.24886 0.97360 0.94734 0.96530 1.69895 1.35597 1.30775 1.16175 0.86640 0.84339 0.78034 0.79364 1.20490 1.21016 1.19666 1.21172 0.89633 0.84975 1.04256 1.19783 0.97528 0.85520 1.05958 1.29080 0.93192 0.94867 0.92580 1.81182 1.09548 1.12288 1.09626 0.90003 0.89988 0.90142 0.88328 0.90946 0.90319 0.94210 0.94094 0.92464 0.89181 0.89716 0.87220 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.96 36.01 0.36 -0.85 16 2 C 0.16 2.73 6.06 -83.19 -0.50 2.23 16 3 N -0.47 -8.49 11.97 32.50 0.39 -8.10 16 4 S 0.25 4.11 23.69 -107.50 -2.55 1.56 16 5 C -0.11 -1.88 6.67 -34.43 -0.23 -2.10 16 6 C -0.08 -1.26 10.24 36.00 0.37 -0.89 16 7 C -0.19 -3.51 4.06 -105.95 -0.43 -3.94 16 8 C 0.59 10.86 5.54 -12.56 -0.07 10.79 16 9 O -0.56 -10.97 16.67 5.26 0.09 -10.89 16 10 N -0.59 -10.22 2.46 -176.36 -0.43 -10.66 16 11 C 0.24 4.87 4.95 -5.19 -0.03 4.84 16 12 C -0.54 -12.33 9.38 -34.44 -0.32 -12.65 16 13 H 0.06 1.43 7.36 -52.48 -0.39 1.04 16 14 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -22.96 13.29 55.43 0.74 -22.22 16 16 Si 0.89 19.21 29.54 -169.99 -5.02 14.19 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 C 0.13 1.83 5.38 -4.04 -0.02 1.80 16 21 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 22 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 23 N -0.45 -7.18 18.54 42.15 0.78 -6.40 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.10 7.39 -51.93 -0.38 0.72 16 27 H 0.10 1.61 7.69 -51.93 -0.40 1.21 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.20 7.74 -51.93 -0.40 0.80 16 30 H 0.04 0.84 8.07 -51.92 -0.42 0.42 16 31 H 0.04 0.92 6.45 -51.93 -0.34 0.58 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.08 1.25 7.37 -51.93 -0.38 0.87 16 35 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -28.57 335.82 -6.80 -35.37 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.38 Total: -0.66 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.47 Total: 2.75 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 1.47 Total: -47.38 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.55 Total: 1.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.57 -6.80 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292412249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.188 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds