Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29519 * 121.53255 * 2 1 4 4 S 1.69479 * 107.84287 * 180.22091 * 3 2 1 5 5 C 1.72013 * 96.02751 * 359.76415 * 4 3 2 6 6 C 1.50697 * 127.31603 * 179.97438 * 5 4 3 7 7 C 1.37901 * 105.36746 * 359.97438 * 5 4 3 8 8 C 1.47335 * 123.08814 * 179.97438 * 7 5 4 9 9 O 1.21614 * 120.00157 * 88.10148 * 8 7 5 10 10 N 1.34779 * 120.00028 * 267.82821 * 8 7 5 11 11 C 1.46503 * 119.99416 * 355.43696 * 10 8 7 12 12 C 1.50703 * 109.46968 * 90.00200 * 11 10 8 13 13 H 1.08003 * 120.00127 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99893 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47073 * 90.00045 * 16 14 12 18 18 H 1.48493 * 109.47040 * 210.00215 * 16 14 12 19 19 H 1.48510 * 109.47123 * 330.00158 * 16 14 12 20 20 C 1.46498 * 120.00317 * 175.43728 * 10 8 7 21 21 C 1.53001 * 109.46842 * 94.12827 * 20 10 8 22 22 C 1.47203 * 109.46809 * 175.21151 * 21 20 10 23 23 N 7.69416 * 64.96011 * 191.18570 * 2 1 3 24 24 H 1.08998 * 109.47269 * 270.21032 * 1 2 3 25 25 H 1.08994 * 109.46812 * 30.21185 * 1 2 3 26 26 H 1.08999 * 109.46790 * 150.21205 * 1 2 3 27 27 H 1.09001 * 109.47148 * 274.32378 * 6 5 4 28 28 H 1.08996 * 109.47553 * 34.32734 * 6 5 4 29 29 H 1.09003 * 109.47118 * 154.32971 * 6 5 4 30 30 H 1.09008 * 109.46952 * 209.99615 * 11 10 8 31 31 H 1.08992 * 109.47404 * 330.00150 * 11 10 8 32 32 H 0.97000 * 120.00192 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.47362 * 214.12836 * 20 10 8 34 34 H 1.08998 * 109.46906 * 334.13086 * 20 10 8 35 35 H 1.08995 * 109.47151 * 295.20773 * 21 20 10 36 36 H 1.08994 * 109.47162 * 55.21245 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8311 0.7029 -0.0062 5 6 3.6018 -1.0019 -0.0019 6 6 4.6677 -2.0671 -0.0048 7 6 2.2352 -1.1868 0.0049 8 6 1.6037 -2.5179 0.0099 9 8 1.3795 -3.0807 1.0644 10 7 1.2693 -3.1095 -1.1540 11 6 1.4413 -2.3888 -2.4179 12 6 2.8185 -2.6593 -2.9669 13 1 3.4975 -3.3039 -2.4285 14 6 3.2112 -2.0846 -4.1571 15 7 2.3843 -1.3000 -4.8130 16 14 4.9185 -2.4192 -4.8372 17 1 4.8756 -3.6156 -5.7158 18 1 5.3776 -1.2451 -5.6219 19 1 5.8597 -2.6630 -3.7146 20 6 0.7338 -4.4731 -1.1554 21 6 -0.7952 -4.4206 -1.1422 22 6 -1.3341 -5.7854 -1.2594 23 7 -1.7495 -6.8386 -1.3523 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8880 -0.5171 26 1 -0.3633 -0.8919 -0.5105 27 1 4.9747 -2.2711 -1.0306 28 1 5.5274 -1.7225 0.5700 29 1 4.2722 -2.9783 0.4440 30 1 0.6920 -2.7268 -3.1338 31 1 1.3226 -1.3192 -2.2453 32 1 2.6607 -0.8955 -5.6501 33 1 1.0717 -4.9953 -2.0505 34 1 1.0868 -5.0029 -0.2706 35 1 -1.1354 -3.9747 -0.2076 36 1 -1.1453 -3.8185 -1.9806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292412249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = 4.508932 kcal Electronic energy + Delta-G solvation = -21608.216288 eV Core-core repulsion = 18411.323803 eV Total energy + Delta-G solvation = -3196.892484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40598 -39.23065 -37.85913 -36.72907 -34.69120 -34.13027 -32.50885 -30.55189 -29.23533 -28.76862 -25.62675 -24.99585 -23.15097 -21.57673 -19.47270 -18.96888 -18.72877 -18.27618 -17.65615 -17.11355 -16.30459 -15.86954 -15.62594 -15.58773 -15.21773 -14.66188 -14.42299 -14.32382 -14.18900 -13.90719 -13.64149 -13.51296 -13.42977 -13.28207 -13.10449 -13.00817 -12.92572 -12.68213 -12.55022 -12.13548 -12.05708 -11.79044 -11.66565 -11.58887 -10.85087 -10.51382 -10.18912 -9.56473 -9.44011 -8.12529 -6.22450 -0.27640 0.49013 0.84386 1.28872 1.43322 1.47758 1.53245 1.57937 1.77782 1.82329 2.31426 2.48275 3.18994 3.22050 3.52331 3.77594 4.04843 4.14660 4.20431 4.33820 4.43202 4.57335 4.64842 4.65473 4.70936 4.84464 4.90634 4.97534 5.05752 5.09272 5.18857 5.34060 5.67519 5.73428 5.85184 6.15899 6.50217 6.58633 6.88343 7.23984 7.48020 8.93462 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.007929 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.108169 B = 3530.304035 C = 5086.285685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.148 3.852 3 N -0.496 5.496 4 S 0.274 5.726 5 C -0.119 4.119 6 C -0.081 4.081 7 C -0.218 4.218 8 C 0.601 3.399 9 O -0.572 6.572 10 N -0.581 5.581 11 C 0.252 3.748 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.026 3.974 15 N -0.919 5.919 16 Si 0.933 3.067 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.259 1.259 20 C 0.121 3.879 21 C -0.033 4.033 22 C 0.246 3.754 23 N -0.491 5.491 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 1.862 7.688 7.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 N -0.318 5.318 4 S 0.430 5.570 5 C -0.249 4.249 6 C -0.140 4.140 7 C -0.237 4.237 8 C 0.386 3.614 9 O -0.453 6.453 10 N -0.310 5.310 11 C 0.132 3.868 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.174 4.174 15 N -0.558 5.558 16 Si 0.760 3.240 17 H -0.206 1.206 18 H -0.218 1.218 19 H -0.183 1.183 20 C -0.003 4.003 21 C -0.074 4.074 22 C -0.071 4.071 23 N -0.169 5.169 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.482 2.185 7.903 8.214 hybrid contribution 0.266 -1.198 -0.945 1.549 sum 0.748 0.986 6.958 7.067 Atomic orbital electron populations 1.20710 0.84780 1.04592 1.04643 1.21552 1.00033 0.86780 0.94626 1.76231 1.00917 1.26601 1.28014 1.83495 1.10172 0.95549 1.67780 1.26139 0.97554 1.02668 0.98575 1.20457 0.94922 0.94497 1.04091 1.20089 0.93100 0.95766 1.14774 1.17342 0.76780 0.83938 0.83327 1.90721 1.56680 1.66160 1.31728 1.48070 1.60543 1.15165 1.07227 1.19148 0.96387 0.91789 0.79507 1.21648 1.00239 1.28981 1.05937 0.91954 1.25462 0.99830 0.94931 0.97165 1.69987 1.36996 1.32260 1.16584 0.85918 0.81724 0.77349 0.79007 1.20637 1.21767 1.18293 1.21287 0.91397 0.83354 1.04260 1.19736 0.95359 0.84769 1.07559 1.29207 0.92112 0.94630 0.91196 1.81215 1.10921 1.13523 1.11222 0.88113 0.89205 0.89912 0.89456 0.87784 0.90647 0.94572 0.95662 0.92854 0.89344 0.89632 0.85502 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 9.96 71.24 0.71 -1.58 16 2 C 0.15 5.03 6.06 43.14 0.26 5.29 16 3 N -0.50 -17.39 11.97 -51.09 -0.61 -18.00 16 4 S 0.27 8.66 23.69 -56.49 -1.34 7.32 16 5 C -0.12 -3.97 6.67 25.60 0.17 -3.80 16 6 C -0.08 -2.31 10.24 71.24 0.73 -1.59 16 7 C -0.22 -7.72 4.06 -20.72 -0.08 -7.80 16 8 C 0.60 21.12 5.54 86.64 0.48 21.60 16 9 O -0.57 -21.59 16.67 -4.08 -0.07 -21.66 16 10 N -0.58 -19.44 2.46 -830.13 -2.04 -21.48 16 11 C 0.25 10.13 4.95 85.63 0.42 10.55 16 12 C -0.53 -23.81 9.38 25.60 0.24 -23.57 16 13 H 0.06 2.77 7.36 -2.91 -0.02 2.75 16 14 C 0.03 1.27 5.46 84.66 0.46 1.73 16 15 N -0.92 -47.42 13.29 21.45 0.28 -47.14 16 16 Si 0.93 38.65 29.54 68.60 2.03 40.68 16 17 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 C 0.12 3.34 5.38 86.38 0.46 3.80 16 21 C -0.03 -0.71 6.03 28.79 0.17 -0.54 16 22 C 0.25 6.23 15.43 89.44 1.38 7.61 16 23 N -0.49 -15.16 18.54 20.01 0.37 -14.79 16 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.08 2.14 7.39 -2.39 -0.02 2.12 16 27 H 0.09 2.72 7.69 -2.39 -0.02 2.70 16 28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.19 7.74 -2.39 -0.02 2.17 16 30 H 0.04 1.50 8.07 -2.38 -0.02 1.48 16 31 H 0.03 1.12 6.45 -2.39 -0.02 1.10 16 32 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 33 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 34 H 0.09 2.37 7.37 -2.39 -0.02 2.35 16 35 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -59.36 335.82 5.14 -54.21 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.11 Total: 9.16 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.41 Total: 11.70 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -1.99 Total: -101.41 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.07 Total: -21.66 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -1.34 Total: 7.32 kcal Total: -59.36 5.14 -54.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292412249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.723 kcal (2) G-P(sol) polarization free energy of solvation -59.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds