Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99830 * 2 1 4 4 N 1.46499 * 109.46760 * 126.18555 * 3 2 1 5 5 C 1.46503 * 119.99869 * 277.32285 * 4 3 2 6 6 C 1.50699 * 109.47403 * 269.99804 * 5 4 3 7 7 H 1.07998 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99933 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99851 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47324 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46885 * 120.00713 * 10 8 6 13 13 H 1.48500 * 109.47069 * 240.00238 * 10 8 6 14 14 C 1.34784 * 120.00271 * 97.32874 * 4 3 2 15 15 O 1.21545 * 120.00039 * 185.61878 * 14 4 3 16 16 C 1.47842 * 119.99608 * 5.61824 * 14 4 3 17 17 C 1.39600 * 120.14036 * 311.32000 * 16 14 4 18 18 C 1.37940 * 119.87969 * 180.25669 * 17 16 14 19 19 C 1.38365 * 120.15901 * 359.46311 * 18 17 16 20 20 C 1.50703 * 119.86053 * 180.23538 * 19 18 17 21 21 C 1.38450 * 120.27942 * 0.51543 * 19 18 17 22 22 Cl 1.73597 * 119.94163 * 179.74698 * 21 19 18 23 23 C 1.38101 * 120.11615 * 359.76345 * 21 19 18 24 24 H 1.07997 * 120.00492 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00204 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00150 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47373 * 6.18976 * 3 2 1 28 28 H 1.09003 * 109.47494 * 246.18497 * 3 2 1 29 29 H 1.09001 * 109.46965 * 30.00738 * 5 4 3 30 30 H 1.09005 * 109.46743 * 150.00470 * 5 4 3 31 31 H 0.96994 * 120.00267 * 179.97438 * 9 8 6 32 32 H 1.08000 * 120.05873 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.91978 * 179.69898 * 18 17 16 34 34 H 1.09001 * 109.46838 * 270.27920 * 20 19 18 35 35 H 1.09000 * 109.46555 * 30.27650 * 20 19 18 36 36 H 1.09001 * 109.47188 * 150.27398 * 20 19 18 37 37 H 1.08000 * 120.07751 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0138 1.3202 1.1148 5 6 2.5607 1.6876 2.4587 6 6 2.7029 3.1760 2.6474 7 1 3.0915 3.7872 1.8463 8 6 2.3359 3.7575 3.8425 9 7 1.8622 3.0133 4.8178 10 14 2.5115 5.6025 4.0761 11 1 3.0637 6.2079 2.8378 12 1 1.1802 6.1938 4.3646 13 1 3.4296 5.8725 5.2116 14 6 4.3050 0.9962 0.9041 15 8 5.0709 0.9092 1.8439 16 6 4.7897 0.7467 -0.4701 17 6 4.0823 -0.1067 -1.3188 18 6 4.5423 -0.3398 -2.5982 19 6 5.6964 0.2786 -3.0454 20 6 6.1900 0.0232 -4.4462 21 6 6.4029 1.1266 -2.2095 22 17 7.8534 1.8927 -2.7775 23 6 5.9559 1.3637 -0.9245 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3603 2.1306 0.1108 28 1 2.6045 1.4123 -0.9402 29 1 1.5151 1.4042 2.5797 30 1 3.1663 1.1678 3.2011 31 1 1.6043 3.4223 5.6587 32 1 3.1791 -0.5870 -0.9727 33 1 3.9982 -1.0037 -3.2536 34 1 6.8623 -0.8347 -4.4438 35 1 5.3412 -0.1821 -5.0986 36 1 6.7232 0.9018 -4.8094 37 1 6.5077 2.0249 -0.2729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292461115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = 6.242175 kcal Electronic energy + Delta-G solvation = -20869.785346 eV Core-core repulsion = 17638.631563 eV Total energy + Delta-G solvation = -3231.153783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15704 -38.35516 -36.45964 -35.83001 -33.36575 -32.84621 -32.06966 -30.86696 -28.28951 -26.91854 -25.51638 -23.37404 -22.77157 -21.67252 -20.20005 -18.94339 -17.11572 -16.53851 -16.21132 -15.71705 -15.23327 -15.14515 -14.57684 -14.24698 -14.19111 -13.90058 -13.72882 -13.07914 -12.77900 -12.56707 -12.44543 -12.17406 -11.84418 -11.79071 -11.44313 -11.36289 -11.20888 -11.07450 -10.92617 -10.84061 -10.63013 -10.21536 -9.67734 -9.26068 -9.16439 -8.92900 -8.60082 -8.45426 -7.76685 -6.06889 -4.11951 0.90676 1.15357 2.03305 2.38710 3.16222 3.28607 3.36464 3.40296 3.63353 3.96620 4.42324 4.61483 4.64039 4.86380 4.99655 5.16703 5.23386 5.27687 5.33574 5.38872 5.40174 5.51021 5.62637 5.73929 5.87245 5.97324 6.06117 6.16677 6.24729 6.31856 6.63561 6.73776 6.85554 7.04422 7.40501 7.48172 7.89350 8.19478 8.29568 8.82282 8.98258 9.53286 11.01314 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.004730 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.430497 B = 5918.442818 C = 7110.495381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.174 4.174 3 C 0.128 3.872 4 N -0.583 5.583 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.548 3.452 15 O -0.531 6.531 16 C -0.105 4.105 17 C -0.093 4.093 18 C -0.116 4.116 19 C -0.068 4.068 20 C -0.119 4.119 21 C -0.042 4.042 22 Cl -0.069 7.069 23 C -0.060 4.060 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -7.036 -18.760 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C 0.004 3.996 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.334 3.666 15 O -0.408 6.408 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.069 4.069 20 C -0.176 4.176 21 C -0.069 4.069 22 Cl -0.040 7.040 23 C -0.079 4.079 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.367 -6.974 -18.081 19.670 hybrid contribution 0.099 1.079 0.256 1.113 sum 3.467 -5.895 -17.825 19.092 Atomic orbital electron populations 1.23840 0.95753 1.01923 0.99744 1.23414 0.96412 0.98782 1.00675 1.20779 0.92852 0.95439 0.90544 1.48161 1.06704 1.64890 1.11563 1.19343 0.95565 0.95750 0.76613 1.21463 1.43111 0.92468 0.99735 0.92333 1.24924 0.94997 0.98465 0.95590 1.69941 1.43213 1.35399 1.04622 0.86448 0.77702 0.85048 0.78282 1.19759 1.20928 1.20823 1.18121 0.82898 0.78209 0.87362 1.90776 1.55021 1.51719 1.43283 1.20170 0.95801 0.99399 0.95497 1.21854 0.99434 0.96684 0.93184 1.20909 0.95900 1.00448 0.96175 1.19870 0.94882 0.95767 0.96375 1.20888 1.01797 1.02991 0.91883 1.20631 0.91167 1.00248 0.94846 1.98350 1.36140 1.80491 1.89038 1.21072 0.94743 0.98462 0.93639 0.88148 0.88606 0.87478 0.89518 0.89951 0.94630 0.93590 0.92721 0.83906 0.84751 0.90621 0.91016 0.90801 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 14.32 29.01 0.42 -1.75 16 2 C -0.17 -2.39 8.56 -36.03 -0.31 -2.69 16 3 C 0.13 2.07 5.34 -5.20 -0.03 2.04 16 4 N -0.58 -12.34 2.45 -177.55 -0.43 -12.78 16 5 C 0.25 6.39 5.21 -5.19 -0.03 6.37 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.55 11.72 7.24 -12.33 -0.09 11.63 16 15 O -0.53 -13.65 16.58 5.33 0.09 -13.56 16 16 C -0.11 -1.75 4.96 -104.97 -0.52 -2.27 16 17 C -0.09 -1.22 7.48 -39.18 -0.29 -1.51 16 18 C -0.12 -1.24 9.68 -39.64 -0.38 -1.62 16 19 C -0.07 -0.76 5.89 -104.50 -0.62 -1.37 16 20 C -0.12 -0.97 9.60 36.01 0.35 -0.63 16 21 C -0.04 -0.56 6.31 -39.55 -0.25 -0.81 16 22 Cl -0.07 -0.82 27.27 -51.86 -1.41 -2.24 16 23 C -0.06 -0.94 9.50 -39.15 -0.37 -1.31 16 24 H 0.10 1.23 7.85 -52.49 -0.41 0.82 16 25 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 26 H 0.11 1.36 6.51 -52.48 -0.34 1.02 16 27 H 0.09 1.46 7.78 -51.93 -0.40 1.05 16 28 H 0.08 1.18 5.26 -51.93 -0.27 0.90 16 29 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.14 1.71 4.14 -52.49 -0.22 1.49 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.07 0.61 6.88 -51.93 -0.36 0.25 16 37 H 0.14 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -32.27 329.75 -8.08 -40.35 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.46 Total: -0.38 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.55 Total: -7.46 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.30 Total: -38.42 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.41 Total: -2.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.27 -8.08 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292461115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.593 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds