Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99830 * 2 1 4 4 N 1.46499 * 109.46760 * 126.18555 * 3 2 1 5 5 C 1.46503 * 119.99869 * 277.32285 * 4 3 2 6 6 C 1.50699 * 109.47403 * 269.99804 * 5 4 3 7 7 H 1.07998 * 120.00144 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00014 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99933 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99851 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47324 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46885 * 120.00713 * 10 8 6 13 13 H 1.48500 * 109.47069 * 240.00238 * 10 8 6 14 14 C 1.34784 * 120.00271 * 97.32874 * 4 3 2 15 15 O 1.21545 * 120.00039 * 185.61878 * 14 4 3 16 16 C 1.47842 * 119.99608 * 5.61824 * 14 4 3 17 17 C 1.39600 * 120.14036 * 311.32000 * 16 14 4 18 18 C 1.37940 * 119.87969 * 180.25669 * 17 16 14 19 19 C 1.38365 * 120.15901 * 359.46311 * 18 17 16 20 20 C 1.50703 * 119.86053 * 180.23538 * 19 18 17 21 21 C 1.38450 * 120.27942 * 0.51543 * 19 18 17 22 22 Cl 1.73597 * 119.94163 * 179.74698 * 21 19 18 23 23 C 1.38101 * 120.11615 * 359.76345 * 21 19 18 24 24 H 1.07997 * 120.00492 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00204 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00150 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47373 * 6.18976 * 3 2 1 28 28 H 1.09003 * 109.47494 * 246.18497 * 3 2 1 29 29 H 1.09001 * 109.46965 * 30.00738 * 5 4 3 30 30 H 1.09005 * 109.46743 * 150.00470 * 5 4 3 31 31 H 0.96994 * 120.00267 * 179.97438 * 9 8 6 32 32 H 1.08000 * 120.05873 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.91978 * 179.69898 * 18 17 16 34 34 H 1.09001 * 109.46838 * 270.27920 * 20 19 18 35 35 H 1.09000 * 109.46555 * 30.27650 * 20 19 18 36 36 H 1.09001 * 109.47188 * 150.27398 * 20 19 18 37 37 H 1.08000 * 120.07751 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0138 1.3202 1.1148 5 6 2.5607 1.6876 2.4587 6 6 2.7029 3.1760 2.6474 7 1 3.0915 3.7872 1.8463 8 6 2.3359 3.7575 3.8425 9 7 1.8622 3.0133 4.8178 10 14 2.5115 5.6025 4.0761 11 1 3.0637 6.2079 2.8378 12 1 1.1802 6.1938 4.3646 13 1 3.4296 5.8725 5.2116 14 6 4.3050 0.9962 0.9041 15 8 5.0709 0.9092 1.8439 16 6 4.7897 0.7467 -0.4701 17 6 4.0823 -0.1067 -1.3188 18 6 4.5423 -0.3398 -2.5982 19 6 5.6964 0.2786 -3.0454 20 6 6.1900 0.0232 -4.4462 21 6 6.4029 1.1266 -2.2095 22 17 7.8534 1.8927 -2.7775 23 6 5.9559 1.3637 -0.9245 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3603 2.1306 0.1108 28 1 2.6045 1.4123 -0.9402 29 1 1.5151 1.4042 2.5797 30 1 3.1663 1.1678 3.2011 31 1 1.6043 3.4223 5.6587 32 1 3.1791 -0.5870 -0.9727 33 1 3.9982 -1.0037 -3.2536 34 1 6.8623 -0.8347 -4.4438 35 1 5.3412 -0.1821 -5.0986 36 1 6.7232 0.9018 -4.8094 37 1 6.5077 2.0249 -0.2729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292461115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = -12.255808 kcal Electronic energy + Delta-G solvation = -20870.587478 eV Core-core repulsion = 17638.631563 eV Total energy + Delta-G solvation = -3231.955915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50022 -39.68509 -37.51214 -37.35323 -35.21015 -33.91892 -33.69671 -31.91864 -29.94472 -28.19418 -26.96681 -25.14661 -23.84038 -22.93379 -21.43741 -20.29185 -18.69361 -18.50956 -17.65457 -16.89965 -16.68709 -16.42886 -16.05457 -15.83941 -15.20713 -15.07113 -14.83276 -14.42573 -14.35489 -14.09878 -13.39834 -13.30594 -13.22249 -13.06881 -12.95376 -12.81811 -12.64912 -12.49044 -12.32263 -12.25458 -12.05926 -11.89873 -11.67389 -10.84136 -10.67380 -10.36319 -9.97849 -9.67241 -9.53445 -8.25620 -6.40496 -0.17780 0.11442 1.01766 1.30460 1.34766 1.37108 1.48861 1.71166 2.24983 2.39649 2.59208 3.04429 3.46258 3.70512 3.81866 4.00575 4.06771 4.18709 4.22740 4.35537 4.48376 4.66651 4.76567 4.82553 4.84664 4.92601 5.03927 5.08787 5.19554 5.21832 5.25755 5.34145 5.45830 5.67046 5.71260 5.73490 5.91959 6.01909 6.59075 6.68866 7.18241 7.34232 8.82150 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.004730 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.430497 B = 5918.442818 C = 7110.495381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C 0.126 3.874 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.281 1.281 14 C 0.542 3.458 15 O -0.592 6.592 16 C -0.130 4.130 17 C -0.087 4.087 18 C -0.099 4.099 19 C -0.055 4.055 20 C -0.119 4.119 21 C -0.050 4.050 22 Cl -0.060 7.060 23 C -0.078 4.078 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.028 0.972 30 H -0.001 1.001 31 H 0.268 0.732 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -7.609 -22.157 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.210 4.210 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.191 1.191 13 H -0.207 1.207 14 C 0.331 3.669 15 O -0.474 6.474 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.055 4.055 20 C -0.175 4.175 21 C -0.076 4.076 22 Cl -0.031 7.031 23 C -0.098 4.098 24 H 0.117 0.883 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.046 0.954 30 H 0.017 0.983 31 H 0.077 0.923 32 H 0.173 0.827 33 H 0.198 0.802 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.442 -7.552 -21.531 22.947 hybrid contribution 0.378 1.207 1.232 1.766 sum 2.821 -6.345 -20.299 21.454 Atomic orbital electron populations 1.24089 0.95295 1.03166 0.96950 1.23279 0.96850 0.97768 1.03119 1.21007 0.92110 0.96894 0.89550 1.48129 1.07890 1.64410 1.11092 1.18768 0.94025 0.94380 0.78564 1.21704 1.43351 0.93464 0.99995 0.93022 1.25822 0.94371 1.03464 0.95125 1.70051 1.43755 1.37521 1.05146 0.85380 0.78317 0.79063 0.78140 1.19290 1.19140 1.20664 1.18908 0.82232 0.76749 0.89010 1.90717 1.56452 1.54466 1.45786 1.19749 0.97452 1.02663 0.93459 1.21996 0.99368 0.95466 0.93651 1.21373 0.95334 0.99738 0.95257 1.20361 0.94135 0.93618 0.97436 1.21012 1.03171 1.03505 0.89860 1.20703 0.91839 1.00938 0.94149 1.98350 1.35620 1.80473 1.88687 1.20934 0.94859 0.99148 0.94869 0.88258 0.85980 0.86175 0.90534 0.87766 0.95359 0.98257 0.92285 0.82712 0.80164 0.89168 0.88226 0.90940 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 14.32 67.78 0.97 -2.58 16 2 C -0.19 -4.98 8.56 25.65 0.22 -4.76 16 3 C 0.13 4.10 5.34 85.63 0.46 4.56 16 4 N -0.59 -26.05 2.45 -833.92 -2.04 -28.09 16 5 C 0.26 14.55 5.21 85.63 0.45 14.99 16 6 C -0.55 -32.11 9.39 25.60 0.24 -31.87 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.67 5.46 84.65 0.46 1.14 16 9 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 14 C 0.54 24.62 7.24 86.78 0.63 25.25 16 15 O -0.59 -33.08 16.58 -3.86 -0.06 -33.14 16 16 C -0.13 -4.41 4.96 -20.09 -0.10 -4.51 16 17 C -0.09 -2.09 7.48 22.53 0.17 -1.92 16 18 C -0.10 -1.70 9.68 22.23 0.22 -1.48 16 19 C -0.05 -1.03 5.89 -19.78 -0.12 -1.14 16 20 C -0.12 -1.39 9.60 71.24 0.68 -0.70 16 21 C -0.05 -1.25 6.31 22.29 0.14 -1.11 16 22 Cl -0.06 -1.38 27.27 -2.72 -0.07 -1.45 16 23 C -0.08 -2.55 9.50 22.55 0.21 -2.34 16 24 H 0.10 2.26 7.85 -2.91 -0.02 2.24 16 25 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.12 2.82 6.51 -2.91 -0.02 2.80 16 27 H 0.08 2.61 7.78 -2.39 -0.02 2.59 16 28 H 0.10 2.88 5.26 -2.39 -0.01 2.87 16 29 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 30 H 0.00 -0.04 7.35 -2.38 -0.02 -0.06 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.16 3.33 4.14 -2.91 -0.01 3.31 16 33 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 36 H 0.07 0.92 6.88 -2.39 -0.02 0.90 16 37 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -75.61 329.75 5.84 -69.76 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.08 Total: 7.96 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.63 Total: -6.48 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.75 Total: -84.07 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.06 Total: -33.14 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.45 kcal Total: -75.61 5.84 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292461115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.507 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds