Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00228 * 2 1 4 4 N 1.46505 * 109.46882 * 125.00201 * 3 2 1 5 5 C 1.46499 * 120.00075 * 284.22133 * 4 3 2 6 6 C 1.50702 * 109.47155 * 270.00273 * 5 4 3 7 7 H 1.08000 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00378 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00513 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47025 * 89.99313 * 10 8 6 12 12 H 1.48497 * 109.47134 * 209.99630 * 10 8 6 13 13 H 1.48506 * 109.46634 * 329.99528 * 10 8 6 14 14 C 1.34772 * 120.00092 * 104.21724 * 4 3 2 15 15 O 1.21561 * 120.00274 * 186.64184 * 14 4 3 16 16 C 1.47772 * 119.99717 * 6.64767 * 14 4 3 17 17 C 1.39630 * 120.15399 * 325.86586 * 16 14 4 18 18 C 1.37897 * 119.86337 * 180.25795 * 17 16 14 19 19 C 1.38422 * 120.18193 * 359.44840 * 18 17 16 20 20 C 1.38262 * 120.31875 * 0.28408 * 19 18 17 21 21 C 1.50704 * 119.93652 * 179.97438 * 20 19 18 22 22 C 1.38160 * 120.13110 * 359.97438 * 20 19 18 23 23 Cl 1.73594 * 120.09374 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00277 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99875 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99260 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46845 * 5.00594 * 3 2 1 28 28 H 1.08989 * 109.47331 * 245.00040 * 3 2 1 29 29 H 1.09002 * 109.47144 * 29.99424 * 5 4 3 30 30 H 1.08996 * 109.47316 * 150.00136 * 5 4 3 31 31 H 0.96997 * 120.00382 * 180.02562 * 9 8 6 32 32 H 1.08000 * 120.06859 * 359.97438 * 17 16 14 33 33 H 1.07997 * 119.90561 * 179.73303 * 18 17 16 34 34 H 1.08002 * 119.83587 * 180.29768 * 19 18 17 35 35 H 1.09007 * 109.46793 * 89.99616 * 21 20 19 36 36 H 1.08993 * 109.47316 * 209.99308 * 21 20 19 37 37 H 1.09000 * 109.46993 * 330.00309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.4912 1.5645 2.4877 6 6 2.4925 3.0435 2.7769 7 1 2.8340 3.7403 2.0258 8 6 2.0588 3.5070 4.0008 9 7 1.6434 2.6585 4.9158 10 14 2.0610 5.3403 4.3596 11 1 0.7576 5.9255 3.9548 12 1 2.2722 5.5599 5.8130 13 1 3.1551 5.9926 3.5962 14 6 4.3120 1.1420 0.9247 15 8 5.0679 1.0435 1.8716 16 6 4.8385 1.0539 -0.4533 17 6 4.0698 0.4694 -1.4618 18 6 4.5692 0.3855 -2.7444 19 6 5.8249 0.8892 -3.0367 20 6 6.5903 1.4745 -2.0450 21 6 7.9566 2.0196 -2.3727 22 6 6.1050 1.5607 -0.7544 23 17 7.0664 2.2964 0.4898 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4025 -0.9313 29 1 1.4749 1.1793 2.5697 30 1 3.1326 1.0534 3.2056 31 1 1.3379 2.9845 5.7767 32 1 3.0880 0.0797 -1.2368 33 1 3.9770 -0.0703 -3.5241 34 1 6.2086 0.8248 -4.0442 35 1 7.8691 3.0648 -2.6694 36 1 8.5981 1.9436 -1.4948 37 1 8.3904 1.4447 -3.1908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292464263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = 28.912087 kcal Electronic energy + Delta-G solvation = -21219.761461 eV Core-core repulsion = 17989.590720 eV Total energy + Delta-G solvation = -3230.170741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20896 -38.17469 -36.29512 -35.71421 -33.35835 -32.83395 -32.02058 -30.84144 -27.96828 -26.80561 -25.67447 -23.97853 -22.08686 -21.74404 -20.05892 -18.75430 -16.93773 -16.53792 -16.41328 -16.00431 -15.19014 -14.70299 -14.58597 -14.32265 -14.06928 -13.93392 -13.31952 -12.91798 -12.84406 -12.42333 -12.40135 -12.02557 -11.85539 -11.59096 -11.36495 -11.25337 -11.11439 -10.95061 -10.76681 -10.56606 -10.47843 -10.15616 -9.66116 -9.25250 -8.96527 -8.70652 -8.53911 -8.41203 -7.67632 -6.02492 -4.07077 0.93967 1.13846 2.38547 2.42307 3.21742 3.31152 3.37966 3.42740 3.73557 4.05314 4.45641 4.64760 4.74239 4.86420 5.10196 5.15187 5.24836 5.31600 5.35312 5.44160 5.49882 5.53896 5.61690 5.68735 5.98455 6.01941 6.14089 6.18931 6.23329 6.31185 6.68693 6.77935 6.90662 7.10264 7.46611 7.54280 7.94035 8.24867 8.36695 8.89282 9.05305 9.57712 11.05600 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.014746 B = 0.005928 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.376058 B = 4722.365739 C = 6045.472125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.175 4.175 3 C 0.105 3.895 4 N -0.583 5.583 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.544 3.456 15 O -0.516 6.516 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.124 4.124 19 C -0.098 4.098 20 C -0.089 4.089 21 C -0.117 4.117 22 C 0.005 3.995 23 Cl -0.037 7.037 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.158 0.842 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -4.658 -18.316 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C -0.019 4.019 4 N -0.314 5.314 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.330 3.670 15 O -0.392 6.392 16 C -0.112 4.112 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.174 4.174 22 C -0.022 4.022 23 Cl -0.007 7.007 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.216 -4.631 -17.441 18.784 hybrid contribution -0.167 1.054 0.396 1.138 sum 5.049 -3.577 -17.045 18.134 Atomic orbital electron populations 1.23841 0.95753 1.01893 0.99476 1.23303 0.96424 0.98809 1.00835 1.21365 0.93671 0.95470 0.91350 1.48084 1.04788 1.68514 1.10001 1.19301 0.94954 0.96692 0.76124 1.21428 1.43201 0.92065 0.99825 0.92458 1.24910 0.95192 0.98011 0.95841 1.69936 1.43403 1.34054 1.05874 0.86526 0.78294 0.85247 0.77566 1.20636 1.21070 1.19859 1.17989 0.83045 0.78647 0.87353 1.90796 1.56505 1.49187 1.42703 1.20197 0.93870 1.01221 0.95888 1.22045 1.00050 0.98216 0.92316 1.21165 0.95945 1.00313 0.96742 1.21084 0.94303 0.97697 0.98584 1.19722 0.97768 1.00224 0.91303 1.20858 0.92524 1.01174 1.02817 1.20887 0.92303 0.98962 0.90098 1.98404 1.69954 1.80149 1.52211 0.88593 0.88179 0.87481 0.90039 0.88099 0.94725 0.93579 0.92741 0.82536 0.85062 0.85152 0.90681 0.90717 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 14.32 29.01 0.42 -1.82 16 2 C -0.17 -2.50 8.23 -36.03 -0.30 -2.80 16 3 C 0.10 1.74 5.37 -5.19 -0.03 1.72 16 4 N -0.58 -12.71 2.48 -177.58 -0.44 -13.15 16 5 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 6 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.54 11.99 7.16 -12.36 -0.09 11.90 16 15 O -0.52 -13.31 14.55 5.31 0.08 -13.24 16 16 C -0.11 -1.89 5.51 -104.94 -0.58 -2.46 16 17 C -0.11 -1.46 7.42 -39.19 -0.29 -1.75 16 18 C -0.12 -1.31 10.03 -39.64 -0.40 -1.70 16 19 C -0.10 -1.02 9.69 -39.50 -0.38 -1.41 16 20 C -0.09 -1.13 5.88 -104.64 -0.62 -1.75 16 21 C -0.12 -1.16 9.61 36.01 0.35 -0.82 16 22 C 0.01 0.09 6.33 -39.07 -0.25 -0.16 16 23 Cl -0.04 -0.66 24.98 -51.86 -1.30 -1.96 16 24 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 25 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 26 H 0.11 1.45 7.71 -52.49 -0.40 1.04 16 27 H 0.08 1.41 7.79 -51.93 -0.40 1.00 16 28 H 0.10 1.45 3.79 -52.21 -0.20 1.25 16 29 H 0.03 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.05 1.38 7.34 -51.93 -0.38 1.00 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.16 1.94 3.70 -52.49 -0.19 1.75 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 37 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -33.45 325.23 -8.07 -41.52 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.42 Total: -0.95 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.61 Total: -8.21 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.30 Total: -39.19 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.30 Total: -1.96 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.45 -8.07 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292464263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.434 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds