Wall clock time and date at job start Tue Mar 31 2020 07:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99970 * 2 1 4 4 N 1.46499 * 109.47126 * 125.00049 * 3 2 1 5 5 C 1.46506 * 119.99936 * 89.99796 * 4 3 2 6 6 C 1.50703 * 109.46877 * 90.00092 * 5 4 3 7 7 H 1.08005 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00081 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00321 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46938 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47198 * 120.00527 * 10 8 6 13 13 H 1.48498 * 109.47360 * 240.00281 * 10 8 6 14 14 C 1.34773 * 120.00036 * 270.27831 * 4 3 2 15 15 O 1.21281 * 120.00220 * 179.72597 * 14 4 3 16 16 C 1.50706 * 120.00080 * 359.72107 * 14 4 3 17 17 C 1.50690 * 109.47185 * 180.02562 * 16 14 4 18 18 C 1.38267 * 119.99547 * 269.72378 * 17 16 14 19 19 C 1.38219 * 120.02767 * 179.77048 * 18 17 16 20 20 C 1.38235 * 120.01071 * 0.50699 * 19 18 17 21 21 C 1.38326 * 119.98943 * 359.74604 * 20 19 18 22 22 Cl 1.73604 * 120.01171 * 180.02562 * 21 20 19 23 23 C 1.38198 * 119.99255 * 90.00156 * 17 16 14 24 24 H 1.07995 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00048 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00152 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47398 * 4.99816 * 3 2 1 28 28 H 1.09005 * 109.46700 * 244.99738 * 3 2 1 29 29 H 1.09000 * 109.46803 * 209.99571 * 5 4 3 30 30 H 1.09000 * 109.47214 * 330.00364 * 5 4 3 31 31 H 0.96998 * 119.99944 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46762 * 300.00389 * 16 14 4 33 33 H 1.08998 * 109.46924 * 59.99727 * 16 14 4 34 34 H 1.08000 * 119.98031 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.99265 * 180.25254 * 19 18 17 36 36 H 1.08007 * 120.00515 * 179.77217 * 20 19 18 37 37 H 1.07998 * 120.00816 * 359.95522 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9480 0.5259 7 1 4.8586 2.9394 0.3797 8 6 6.6018 1.7095 0.3077 9 7 7.0925 0.5024 0.4861 10 14 7.7206 3.1005 -0.2428 11 1 6.9296 4.3509 -0.3704 12 1 8.7972 3.2966 0.7610 13 1 8.3244 2.7600 -1.5560 14 6 2.5919 1.8171 2.3228 15 8 3.3605 1.8347 3.2609 16 6 1.1876 2.3379 2.4895 17 6 0.9949 2.8192 3.9045 18 6 0.5339 1.9481 4.8742 19 6 0.3615 2.3876 6.1733 20 6 0.6400 3.7012 6.5014 21 6 1.0963 4.5746 5.5306 22 17 1.4469 6.2243 5.9423 23 6 1.2737 4.1327 4.2314 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 4.7141 0.4279 1.9200 30 1 4.3666 0.0351 0.2190 31 1 8.0354 0.3345 0.3322 32 1 1.0225 3.1650 1.7991 33 1 0.4764 1.5397 2.2769 34 1 0.3116 0.9230 4.6171 35 1 0.0052 1.7056 6.9311 36 1 0.5017 4.0455 7.5158 37 1 1.6302 4.8140 3.4731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292568443.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:52 Heat of formation + Delta-G solvation = -19.578658 kcal Electronic energy + Delta-G solvation = -20645.785017 eV Core-core repulsion = 17413.511559 eV Total energy + Delta-G solvation = -3232.273458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.09684 -39.83739 -37.47334 -37.14510 -35.21584 -33.76421 -33.61603 -31.67428 -30.04946 -28.33287 -26.82655 -24.89022 -23.63580 -22.59698 -21.05356 -19.89215 -18.59333 -18.02155 -17.95769 -17.08306 -16.83503 -16.44483 -16.11140 -15.80386 -15.38860 -14.71933 -14.63835 -14.37562 -14.25396 -14.13861 -14.02320 -13.47603 -13.15831 -12.98248 -12.75125 -12.56440 -12.41119 -12.34582 -12.27374 -12.16130 -12.14142 -11.77769 -11.65866 -10.75232 -10.65363 -10.25606 -9.83359 -9.60694 -9.44335 -8.23102 -6.37495 0.20634 0.31418 1.14571 1.34719 1.36829 1.38049 1.49213 1.85753 2.33284 2.45038 2.80219 3.06803 3.61288 3.86858 3.93594 4.06213 4.11416 4.18961 4.29484 4.34788 4.48554 4.59996 4.60291 4.79851 4.87574 4.93910 5.04105 5.14676 5.25079 5.25594 5.37267 5.54259 5.56273 5.77320 5.84227 5.85856 5.88430 6.06359 6.70275 6.80919 7.28541 7.50098 8.84200 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.004795 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.702805 B = 5838.537274 C = 7378.914631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.191 4.191 3 C 0.132 3.868 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.501 3.499 15 O -0.591 6.591 16 C -0.090 4.090 17 C -0.061 4.061 18 C -0.111 4.111 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.046 4.046 22 Cl -0.077 7.077 23 C -0.115 4.115 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.077 0.923 29 H -0.004 1.004 30 H 0.021 0.979 31 H 0.266 0.734 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.011 4.285 4.930 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.210 4.210 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.141 3.859 6 C -0.578 4.578 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.290 3.710 15 O -0.471 6.471 16 C -0.129 4.129 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.073 4.073 22 Cl -0.048 7.048 23 C -0.134 4.134 24 H 0.140 0.860 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.014 0.986 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.405 4.343 5.408 20.607 hybrid contribution 1.479 0.462 -0.329 1.584 sum -17.926 4.805 5.080 19.241 Atomic orbital electron populations 1.24080 0.94324 1.03685 0.97481 1.23234 0.97063 0.98009 1.02682 1.20852 0.91932 0.96789 0.89397 1.48216 1.13241 1.60727 1.10807 1.18699 0.78374 0.93814 0.95011 1.21741 0.94309 0.96196 1.45590 0.92806 1.25839 0.99534 0.98311 0.95430 1.70060 1.14590 1.22211 1.50025 0.85403 0.78381 0.79138 0.78111 1.19061 1.20927 1.19343 1.21164 0.90255 0.77640 0.81969 1.90668 1.57567 1.57643 1.41266 1.20783 0.93150 1.04020 0.94988 1.19453 0.98096 0.92983 0.95644 1.21408 0.98313 0.99953 0.93219 1.21423 0.98888 0.95262 0.96704 1.21324 0.99485 0.93407 0.99489 1.21013 1.04578 0.86496 0.95174 1.98351 1.93760 1.18902 1.93774 1.21009 1.00311 0.96530 0.95560 0.85991 0.86920 0.89184 0.87385 0.90460 0.98634 0.96115 0.92462 0.85954 0.85079 0.84085 0.82045 0.83049 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 13.84 67.79 0.94 -1.74 16 2 C -0.19 -4.78 9.73 25.65 0.25 -4.53 16 3 C 0.13 3.94 5.65 85.63 0.48 4.42 16 4 N -0.60 -24.98 2.44 -830.48 -2.03 -27.00 16 5 C 0.26 14.23 5.17 85.63 0.44 14.67 16 6 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 10 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.50 20.36 7.66 87.66 0.67 21.03 16 15 O -0.59 -30.67 15.61 -3.03 -0.05 -30.72 16 16 C -0.09 -2.39 4.38 29.10 0.13 -2.26 16 17 C -0.06 -1.69 4.37 -19.87 -0.09 -1.78 16 18 C -0.11 -2.68 9.70 22.27 0.22 -2.47 16 19 C -0.10 -2.19 10.05 22.26 0.22 -1.96 16 20 C -0.12 -2.65 9.83 22.29 0.22 -2.43 16 21 C -0.05 -1.22 6.32 22.32 0.14 -1.08 16 22 Cl -0.08 -1.90 28.96 -2.72 -0.08 -1.98 16 23 C -0.12 -3.32 9.49 22.29 0.21 -3.10 16 24 H 0.12 1.47 7.84 -2.91 -0.02 1.45 16 25 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 26 H 0.09 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.11 2.37 6.10 -2.39 -0.01 2.36 16 28 H 0.08 2.50 8.07 -2.38 -0.02 2.48 16 29 H 0.00 -0.28 7.41 -2.39 -0.02 -0.30 16 30 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 32 H 0.12 2.63 7.35 -2.39 -0.02 2.61 16 33 H 0.13 2.62 7.44 -2.39 -0.02 2.60 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -75.87 338.93 5.76 -70.12 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.06 Total: 10.00 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 4.54 Total: -11.38 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -1.74 Total: -83.49 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -75.87 5.76 -70.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292568443.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.536 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds