Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99949 * 2 1 4 4 N 1.46498 * 109.46872 * 125.00078 * 3 2 1 5 5 C 1.46494 * 120.00241 * 264.88940 * 4 3 2 6 6 C 1.50698 * 109.47569 * 270.00324 * 5 4 3 7 7 H 1.08007 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00417 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00115 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47064 * 90.00345 * 10 8 6 12 12 H 1.48501 * 109.47161 * 209.99979 * 10 8 6 13 13 H 1.48495 * 109.47374 * 330.00129 * 10 8 6 14 14 C 1.34779 * 119.99744 * 84.89493 * 4 3 2 15 15 O 1.21564 * 119.99776 * 185.53017 * 14 4 3 16 16 C 1.47783 * 120.00274 * 5.53054 * 14 4 3 17 17 C 1.39638 * 120.13112 * 55.21129 * 16 14 4 18 18 C 1.37872 * 119.86485 * 180.25609 * 17 16 14 19 19 C 1.38527 * 120.13132 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.86486 * 180.02562 * 19 18 17 21 21 C 1.38493 * 120.26903 * 0.02562 * 19 18 17 22 22 C 1.37910 * 120.12699 * 359.97438 * 21 19 18 23 23 C 1.50710 * 120.06484 * 180.02562 * 22 21 19 24 24 H 1.08006 * 119.99808 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00028 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00331 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46865 * 5.00124 * 3 2 1 28 28 H 1.08994 * 109.46788 * 245.00508 * 3 2 1 29 29 H 1.09011 * 109.47343 * 30.00627 * 5 4 3 30 30 H 1.08999 * 109.47471 * 149.99961 * 5 4 3 31 31 H 0.97001 * 120.00251 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.06601 * 0.25661 * 17 16 14 33 33 H 1.07997 * 119.93135 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.93479 * 180.02562 * 21 19 18 35 35 H 1.09003 * 109.46899 * 274.94366 * 23 22 21 36 36 H 1.09004 * 109.46815 * 34.93718 * 23 22 21 37 37 H 1.08999 * 109.47173 * 154.93964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5971 1.9659 2.3911 6 6 2.9835 3.4222 2.3642 7 1 3.4751 3.8345 1.4953 8 6 2.7086 4.2286 3.4481 9 7 2.1087 3.7270 4.5056 10 14 3.1871 6.0340 3.4144 11 1 2.0683 6.8321 2.8518 12 1 3.4782 6.4949 4.7957 13 1 4.3950 6.2103 2.5689 14 6 4.2147 0.7733 1.0133 15 8 4.9482 0.7057 1.9803 16 6 4.6616 0.2430 -0.2917 17 6 4.6563 1.0642 -1.4210 18 6 5.0693 0.5622 -2.6369 19 6 5.4885 -0.7541 -2.7395 20 17 6.0079 -1.3789 -4.2737 21 6 5.4950 -1.5738 -1.6232 22 6 5.0841 -1.0829 -0.4016 23 6 5.0923 -1.9759 0.8124 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.5179 1.8786 2.5178 30 1 3.1014 1.4715 3.2213 31 1 1.9156 4.2943 5.2684 32 1 4.3293 2.0904 -1.3422 33 1 5.0661 1.1965 -3.5109 34 1 5.8233 -2.5991 -1.7093 35 1 4.1649 -2.5477 0.8491 36 1 5.9388 -2.6602 0.7544 37 1 5.1790 -1.3660 1.7115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292588031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = -14.153038 kcal Electronic energy + Delta-G solvation = -21108.645380 eV Core-core repulsion = 17876.607195 eV Total energy + Delta-G solvation = -3232.038185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54610 -39.52961 -37.48225 -37.31457 -35.14040 -33.91240 -33.61322 -32.23285 -29.53573 -28.16206 -26.99893 -25.52919 -23.91708 -22.70050 -21.25459 -20.22563 -18.66214 -18.28772 -17.61006 -17.28977 -16.95125 -16.35040 -16.07159 -15.54812 -15.16399 -14.91404 -14.71544 -14.30978 -14.22731 -14.14948 -13.76526 -13.38872 -13.34075 -13.15498 -12.92028 -12.88283 -12.60026 -12.47890 -12.25617 -12.23620 -12.15116 -11.82472 -11.68924 -10.75099 -10.64904 -10.37674 -9.92364 -9.71478 -9.47059 -8.23069 -6.38247 -0.21162 0.19358 1.04628 1.28582 1.37354 1.40187 1.50268 1.71852 2.28922 2.40237 2.56491 3.07064 3.53405 3.68202 3.75851 4.03139 4.09157 4.21295 4.28297 4.39677 4.41777 4.61303 4.68910 4.78720 4.80226 4.93652 5.02138 5.07355 5.10064 5.18078 5.20577 5.43476 5.49406 5.63966 5.68060 5.74326 5.91430 6.03686 6.62538 6.71521 7.22050 7.37581 8.84345 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.004323 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.181588 B = 6475.276376 C = 6760.754637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.184 4.184 3 C 0.126 3.874 4 N -0.587 5.587 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.056 0.944 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.549 3.451 15 O -0.583 6.583 16 C -0.128 4.128 17 C -0.079 4.079 18 C -0.110 4.110 19 C -0.018 4.018 20 Cl -0.056 7.056 21 C -0.109 4.109 22 C -0.036 4.036 23 C -0.132 4.132 24 H 0.102 0.898 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.023 0.977 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -10.527 -18.218 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.005 3.995 4 N -0.316 5.316 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.338 3.662 15 O -0.465 6.465 16 C -0.132 4.132 17 C -0.097 4.097 18 C -0.129 4.129 19 C -0.044 4.044 20 Cl -0.027 7.027 21 C -0.127 4.127 22 C -0.038 4.038 23 C -0.188 4.188 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.041 0.959 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.241 -10.549 -17.664 20.696 hybrid contribution 0.149 0.966 0.637 1.166 sum 2.389 -9.583 -17.027 19.684 Atomic orbital electron populations 1.24048 0.95255 1.03032 0.98029 1.23255 0.96844 0.98015 1.02163 1.20998 0.92597 0.96532 0.89402 1.48143 1.13831 1.54389 1.15253 1.18775 0.94428 0.91576 0.80969 1.21694 1.39416 0.94984 1.02260 0.92533 1.25839 0.94735 1.03702 0.94604 1.70057 1.42385 1.37945 1.06272 0.85417 0.78912 0.78999 0.77511 1.18752 1.20745 1.19643 1.18769 0.81605 0.77431 0.88425 1.90703 1.55242 1.59250 1.41276 1.19925 1.04331 0.95913 0.92986 1.21272 0.97669 1.00009 0.90796 1.21148 0.99243 0.94148 0.98346 1.21150 1.01170 0.94483 0.87635 1.98379 1.88900 1.87101 1.28271 1.21015 1.00887 1.01263 0.89561 1.19923 0.95360 0.92411 0.96066 1.21035 1.03999 0.98949 0.94806 0.87987 0.86445 0.87635 0.89872 0.87932 0.95899 0.98176 0.92368 0.84110 0.81864 0.82078 0.89698 0.88540 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 14.32 67.78 0.97 -3.07 16 2 C -0.18 -5.21 9.81 25.65 0.25 -4.96 16 3 C 0.13 4.15 5.62 85.64 0.48 4.63 16 4 N -0.59 -25.45 2.45 -833.98 -2.05 -27.49 16 5 C 0.26 14.28 5.18 85.63 0.44 14.72 16 6 C -0.55 -31.14 9.39 25.60 0.24 -30.90 16 7 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 10 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.55 23.77 6.43 86.77 0.56 24.33 16 15 O -0.58 -30.78 14.70 -3.92 -0.06 -30.83 16 16 C -0.13 -4.16 4.96 -20.09 -0.10 -4.26 16 17 C -0.08 -2.08 7.60 22.52 0.17 -1.91 16 18 C -0.11 -2.27 9.81 22.25 0.22 -2.05 16 19 C -0.02 -0.35 6.33 22.40 0.14 -0.21 16 20 Cl -0.06 -0.94 28.95 -2.72 -0.08 -1.02 16 21 C -0.11 -2.30 9.49 22.25 0.21 -2.09 16 22 C -0.04 -1.00 5.91 -19.61 -0.12 -1.11 16 23 C -0.13 -3.53 9.69 71.24 0.69 -2.84 16 24 H 0.10 2.43 7.84 -2.91 -0.02 2.40 16 25 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 26 H 0.11 2.93 8.06 -2.91 -0.02 2.90 16 27 H 0.08 2.79 7.68 -2.38 -0.02 2.78 16 28 H 0.10 2.84 4.55 -2.39 -0.01 2.83 16 29 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 30 H 0.00 0.01 7.35 -2.39 -0.02 -0.01 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.14 3.64 7.39 -2.91 -0.02 3.62 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.10 2.00 8.12 -2.38 -0.02 1.98 16 37 H 0.05 1.99 5.58 -2.39 -0.01 1.98 16 Total: -1.00 -70.72 333.30 5.82 -64.90 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.07 Total: 12.19 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 4.62 Total: -8.67 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.76 Total: -83.02 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.06 Total: -30.83 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -70.72 5.82 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292588031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.747 kcal (2) G-P(sol) polarization free energy of solvation -70.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds