Wall clock time and date at job start Tue Mar 31 2020 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53775 * 113.61495 * 2 1 4 4 C 1.53779 * 87.08308 * 139.98001 * 3 2 1 5 5 C 1.50710 * 113.61167 * 89.11244 * 4 3 2 6 6 O 1.21288 * 120.00121 * 244.27198 * 5 4 3 7 7 N 1.34779 * 119.99599 * 64.27298 * 5 4 3 8 8 C 1.37089 * 119.99548 * 174.97180 * 7 5 4 9 9 H 1.07995 * 120.00764 * 359.97438 * 8 7 5 10 10 C 1.38961 * 119.99761 * 179.72487 * 8 7 5 11 11 N 1.31408 * 120.00068 * 0.27187 * 10 8 7 12 12 Si 1.86802 * 119.99737 * 180.27388 * 10 8 7 13 13 H 1.48497 * 109.47251 * 59.99972 * 12 10 8 14 14 H 1.48505 * 109.46745 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47374 * 299.99363 * 12 10 8 16 16 C 1.50696 * 113.61986 * 219.93363 * 4 3 2 17 17 C 1.38259 * 119.98987 * 342.34477 * 16 4 3 18 18 C 1.38224 * 120.02331 * 179.76344 * 17 16 4 19 19 C 1.38233 * 120.01419 * 0.51271 * 18 17 16 20 20 C 1.38329 * 119.98580 * 359.74406 * 19 18 17 21 21 Cl 1.73601 * 120.01291 * 179.97438 * 20 19 18 22 22 C 1.38188 * 119.99532 * 162.61692 * 16 4 3 23 23 C 1.53777 * 113.61555 * 97.49939 * 2 1 3 24 24 H 1.08999 * 109.47349 * 59.99566 * 1 2 3 25 25 H 1.08997 * 109.47581 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47416 * 299.99878 * 1 2 3 27 27 H 1.09000 * 112.90273 * 228.75154 * 2 1 3 28 28 H 1.09007 * 113.61587 * 25.43221 * 3 2 1 29 29 H 1.09004 * 113.61584 * 254.53179 * 3 2 1 30 30 H 0.96998 * 119.99997 * 354.97026 * 7 5 4 31 31 H 0.97002 * 119.99884 * 180.02562 * 11 10 8 32 32 H 1.07999 * 119.99049 * 0.02562 * 17 16 4 33 33 H 1.08002 * 119.99349 * 180.27646 * 18 17 16 34 34 H 1.07997 * 120.00594 * 179.71977 * 19 18 17 35 35 H 1.08003 * 120.00707 * 0.02562 * 22 16 4 36 36 H 1.09004 * 113.61701 * 105.46353 * 23 2 1 37 37 H 1.09008 * 113.61352 * 334.56491 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1923 0.8661 0.9876 5 6 4.4073 0.2781 0.3172 6 8 4.6531 -0.9036 0.4359 7 7 5.2205 1.0655 -0.4143 8 6 6.3797 0.5546 -0.9384 9 1 6.6414 -0.4787 -0.7648 10 6 7.2154 1.3648 -1.6974 11 7 6.8972 2.6223 -1.9083 12 14 8.7911 0.6665 -2.4178 13 1 8.4627 -0.4612 -3.3265 14 1 9.4987 1.7262 -3.1805 15 1 9.6642 0.1795 -1.3199 16 6 3.5423 1.8336 2.0887 17 6 3.2370 3.1752 1.9529 18 6 3.5533 4.0623 2.9645 19 6 4.1846 3.6104 4.1082 20 6 4.4951 2.2691 4.2424 21 17 5.2885 1.7009 5.6781 22 6 4.1733 1.3806 3.2316 23 6 2.1460 -0.1839 1.3969 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.9542 -0.6620 -0.7549 28 1 1.4945 2.1704 0.4289 29 1 2.5650 1.7024 -0.9626 30 1 4.9857 1.9937 -0.5700 31 1 7.4804 3.1877 -2.4384 32 1 2.7474 3.5294 1.0578 33 1 3.3105 5.1095 2.8598 34 1 4.4357 4.3044 4.8966 35 1 4.4161 0.3333 3.3356 36 1 2.5650 -1.1765 1.5622 37 1 1.4945 0.1420 2.2078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294506394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:47 Heat of formation + Delta-G solvation = -27.831416 kcal Electronic energy + Delta-G solvation = -21359.540529 eV Core-core repulsion = 18126.909205 eV Total energy + Delta-G solvation = -3232.631324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94042 -39.72199 -38.47718 -37.36416 -35.99421 -33.42687 -32.72878 -31.72858 -29.89249 -27.40808 -26.70299 -25.10746 -23.51971 -22.79871 -21.43208 -20.21483 -19.43854 -18.24173 -17.47740 -16.83639 -16.42433 -16.20502 -15.90761 -15.79173 -15.54036 -14.85641 -14.66890 -14.38968 -14.20700 -14.15064 -13.60135 -13.30083 -13.09831 -12.97093 -12.67338 -12.49937 -12.48368 -12.43024 -12.17161 -11.95685 -11.91964 -11.80013 -11.55524 -11.16153 -11.07265 -10.49870 -10.04653 -9.80141 -9.57096 -8.49682 -5.98561 0.19517 0.30009 1.13065 1.35933 1.38350 1.49058 1.96974 2.26284 2.64250 3.10261 3.13905 3.55060 3.66036 3.70347 3.79553 3.96316 4.14130 4.17252 4.34604 4.49063 4.52403 4.60049 4.73815 4.79333 4.85541 4.88248 4.95309 4.99271 5.17609 5.22566 5.28423 5.36907 5.37393 5.44114 5.56185 5.59727 5.86690 5.96910 6.54835 7.07710 7.51646 8.06075 8.67108 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.006352 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.591161 B = 4407.129623 C = 5827.987143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C -0.111 4.111 4 C -0.062 4.062 5 C 0.466 3.534 6 O -0.633 6.633 7 N -0.558 5.558 8 C -0.339 4.339 9 H 0.076 0.924 10 C -0.007 4.007 11 N -0.913 5.913 12 Si 0.989 3.011 13 H -0.271 1.271 14 H -0.266 1.266 15 H -0.274 1.274 16 C -0.054 4.054 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.116 4.116 20 C -0.042 4.042 21 Cl -0.077 7.077 22 C -0.119 4.119 23 C -0.102 4.102 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.396 0.604 31 H 0.279 0.721 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 6.298 8.700 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.129 4.129 3 C -0.149 4.149 4 C -0.065 4.065 5 C 0.253 3.747 6 O -0.521 6.521 7 N -0.192 5.192 8 C -0.469 4.469 9 H 0.094 0.906 10 C -0.208 4.208 11 N -0.553 5.553 12 Si 0.812 3.188 13 H -0.196 1.196 14 H -0.191 1.191 15 H -0.199 1.199 16 C -0.055 4.055 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.134 4.134 20 C -0.069 4.069 21 Cl -0.048 7.048 22 C -0.138 4.138 23 C -0.140 4.140 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.174 0.826 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.154 5.635 8.792 15.280 hybrid contribution 1.343 -0.467 -0.376 1.471 sum -9.811 5.168 8.417 13.921 Atomic orbital electron populations 1.21647 0.91780 1.02290 1.02908 1.22334 0.97560 0.96545 0.96486 1.23194 0.95827 0.97999 0.97863 1.20702 0.92825 0.97425 0.95552 1.19980 0.85763 0.86227 0.82732 1.90467 1.76368 1.17995 1.67232 1.41784 1.19300 1.12714 1.45450 1.19634 0.98752 0.97632 1.30859 0.90556 1.26000 1.02269 0.95517 0.96966 1.69656 1.39855 1.06127 1.39686 0.85057 0.77318 0.78069 0.78330 1.19648 1.19071 1.19897 1.19435 0.98204 0.94714 0.93140 1.21475 0.99689 0.91368 1.00323 1.21490 0.96773 1.01332 0.91816 1.21356 0.99179 0.92823 1.00046 1.20993 1.01421 0.95035 0.89441 1.98344 1.79083 1.89767 1.37641 1.20847 0.99822 0.99467 0.93698 1.22948 0.95340 0.97519 0.98158 0.91449 0.92387 0.90905 0.92188 0.85612 0.92112 0.77025 0.91125 0.83086 0.81293 0.82643 0.87520 0.92869 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.71 71.98 0.70 -1.94 16 2 C -0.11 -3.24 4.08 -10.27 -0.04 -3.28 16 3 C -0.11 -3.20 5.86 31.12 0.18 -3.02 16 4 C -0.06 -2.22 0.92 -53.15 -0.05 -2.27 16 5 C 0.47 23.00 6.25 87.66 0.55 23.55 16 6 O -0.63 -36.44 15.55 -3.05 -0.05 -36.49 16 7 N -0.56 -29.44 5.28 -306.98 -1.62 -31.07 16 8 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 9 H 0.08 4.73 7.17 -2.91 -0.02 4.71 16 10 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 11 N -0.91 -49.30 13.05 21.67 0.28 -49.02 16 12 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 C -0.05 -1.77 4.87 -19.87 -0.10 -1.87 16 17 C -0.11 -2.88 9.05 22.27 0.20 -2.68 16 18 C -0.10 -2.09 10.05 22.27 0.22 -1.87 16 19 C -0.12 -2.75 9.83 22.29 0.22 -2.53 16 20 C -0.04 -1.26 6.32 22.32 0.14 -1.12 16 21 Cl -0.08 -2.15 28.96 -2.72 -0.08 -2.23 16 22 C -0.12 -4.13 9.25 22.29 0.21 -3.93 16 23 C -0.10 -3.27 6.53 31.12 0.20 -3.06 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.24 7.94 -2.38 -0.02 1.22 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.13 2.65 6.79 -2.38 -0.02 2.63 16 29 H 0.06 1.93 8.09 -2.39 -0.02 1.92 16 30 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 31 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.15 3.25 6.44 -2.91 -0.02 3.24 16 33 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.05 2.01 7.35 -2.38 -0.02 1.99 16 37 H 0.11 2.83 7.92 -2.38 -0.02 2.81 16 Total: -1.00 -68.56 328.11 4.64 -63.92 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.36 Total: 32.23 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.72 Total: -22.81 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.34 Total: -80.08 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.05 Total: -36.49 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -68.56 4.64 -63.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294506394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.089 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds