Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47246 * 327.06431 * 3 2 1 5 5 C 1.37101 * 119.99687 * 264.09392 * 4 3 2 6 6 H 1.08001 * 119.99377 * 198.05785 * 5 4 3 7 7 C 1.38941 * 120.00400 * 18.05206 * 5 4 3 8 8 N 1.31414 * 120.00133 * 21.03579 * 7 5 4 9 9 Si 1.86803 * 120.00373 * 201.03331 * 7 5 4 10 10 H 1.48501 * 109.46655 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47340 * 119.99966 * 9 7 5 12 12 H 1.48502 * 109.47038 * 240.00311 * 9 7 5 13 13 C 1.34772 * 119.99947 * 84.09121 * 4 3 2 14 14 O 1.21290 * 120.00139 * 0.02562 * 13 4 3 15 15 C 1.50709 * 119.99835 * 180.02562 * 13 4 3 16 16 C 1.50698 * 109.46886 * 180.02562 * 15 13 4 17 17 C 1.38197 * 120.00563 * 99.99553 * 16 15 13 18 18 C 1.38433 * 120.00352 * 180.02562 * 17 16 15 19 19 F 1.35098 * 120.00153 * 180.02562 * 18 17 16 20 20 C 1.38472 * 119.99466 * 359.97438 * 18 17 16 21 21 C 1.50708 * 119.99679 * 179.97438 * 20 18 17 22 22 C 1.38157 * 120.00557 * 0.02562 * 20 18 17 23 23 C 1.38435 * 119.99329 * 279.98991 * 16 15 13 24 24 F 1.35092 * 120.00418 * 0.02702 * 23 16 15 25 25 H 4.40639 * 5.51330 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46953 * 207.06696 * 3 2 1 27 27 H 1.08994 * 109.47340 * 87.06140 * 3 2 1 28 28 H 0.96996 * 120.00624 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.47138 * 59.99428 * 15 13 4 30 30 H 1.09000 * 109.46550 * 299.99617 * 15 13 4 31 31 H 1.07999 * 120.00226 * 0.04562 * 17 16 15 32 32 H 1.08997 * 109.47189 * 270.02815 * 21 20 18 33 33 H 1.09003 * 109.46634 * 30.02551 * 21 20 18 34 34 H 1.08998 * 109.46473 * 150.02089 * 21 20 18 35 35 H 1.07997 * 120.00394 * 179.69778 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1584 0.7510 5 6 3.4785 -1.0243 2.0714 6 1 4.0997 -1.7695 2.5460 7 6 3.0278 0.0702 2.7990 8 7 1.9744 0.7418 2.3910 9 14 3.9189 0.5873 4.3572 10 1 5.0649 -0.3259 4.5981 11 1 4.4170 1.9778 4.2043 12 1 2.9828 0.5205 5.5081 13 6 3.2468 -2.3564 0.1438 14 8 2.9432 -2.4749 -1.0245 15 6 3.7492 -3.5488 0.9165 16 6 3.7800 -4.7554 0.0142 17 6 4.9714 -5.1616 -0.5561 18 6 4.9995 -6.2697 -1.3855 19 9 6.1644 -6.6671 -1.9425 20 6 3.8339 -6.9713 -1.6431 21 6 3.8644 -8.1773 -2.5464 22 6 2.6427 -6.5652 -1.0730 23 6 2.6146 -5.4569 -0.2433 24 9 1.4498 -5.0595 0.3138 25 1 -1.0498 -0.0002 0.0003 26 1 3.0089 0.9159 0.4676 27 1 3.0094 -0.0519 -1.0262 28 1 1.6594 1.5057 2.8990 29 1 3.0853 -3.7416 1.7592 30 1 4.7546 -3.3454 1.2851 31 1 5.8807 -4.6148 -0.3546 32 1 3.6885 -7.8648 -3.5757 33 1 4.8389 -8.6603 -2.4748 34 1 3.0878 -8.8789 -2.2418 35 1 1.7327 -7.1095 -1.2778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295145897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = -39.759146 kcal Electronic energy + Delta-G solvation = -22970.862472 eV Core-core repulsion = 19185.917243 eV Total energy + Delta-G solvation = -3784.945230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.80809 -48.53928 -39.27642 -38.26361 -35.19759 -33.56321 -31.94386 -31.42221 -29.97848 -29.57981 -26.73538 -25.33322 -24.16570 -22.90121 -21.21766 -19.28812 -17.91893 -17.22206 -16.93728 -16.84578 -16.49485 -16.08330 -15.64208 -15.00869 -14.50740 -14.40171 -14.27538 -14.09883 -13.95508 -13.36702 -13.17268 -12.86477 -12.82158 -12.74700 -12.32349 -11.95971 -11.90684 -11.65458 -11.26485 -11.11785 -11.03380 -10.88000 -10.56526 -10.47174 -9.39448 -9.32554 -8.90807 -8.73258 -8.48578 -8.15510 -7.95760 -6.43363 -4.01521 1.15765 1.20392 3.04873 3.17301 3.20177 3.47238 3.69686 3.94508 4.11033 4.28140 4.28996 4.40426 4.65882 4.76304 4.89234 4.99315 5.12287 5.24863 5.44164 5.48491 5.66655 5.68440 5.82223 5.93361 6.03209 6.12939 6.17632 6.25411 6.32689 6.50519 6.65676 6.83516 7.00207 7.17756 7.31962 7.61499 8.24025 8.96923 9.00165 9.36644 9.78500 10.55971 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.004559 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.903662 B = 6139.580131 C = 6715.386276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.100 4.100 3 C 0.243 3.757 4 N -0.436 5.436 5 C -0.350 4.350 6 H 0.102 0.898 7 C 0.040 3.960 8 N -0.847 5.847 9 Si 0.917 3.083 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.465 3.535 14 O -0.597 6.597 15 C -0.087 4.087 16 C -0.057 4.057 17 C -0.114 4.114 18 C 0.082 3.918 19 F -0.139 7.139 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.131 4.131 23 C 0.114 3.886 24 F -0.129 7.129 25 H 0.197 0.803 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.270 0.730 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 -11.030 -3.369 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.102 4.102 3 C 0.121 3.879 4 N -0.154 5.154 5 C -0.477 4.477 6 H 0.119 0.881 7 C -0.167 4.167 8 N -0.483 5.483 9 Si 0.743 3.257 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.253 3.747 14 O -0.483 6.483 15 C -0.126 4.126 16 C -0.058 4.058 17 C -0.132 4.132 18 C 0.062 3.938 19 F -0.118 7.118 20 C -0.104 4.104 21 C -0.167 4.167 22 C -0.150 4.150 23 C 0.095 3.905 24 F -0.107 7.107 25 H 0.214 0.786 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.667 -10.883 -3.861 12.116 hybrid contribution -0.012 0.537 1.106 1.230 sum 3.654 -10.346 -2.755 11.313 Atomic orbital electron populations 1.24177 0.95324 1.03203 1.06306 1.23106 0.94330 0.97586 0.95148 1.18037 0.84279 0.90884 0.94718 1.43657 1.55619 1.05781 1.10357 1.19638 1.31408 1.10789 0.85823 0.88063 1.25291 0.94787 0.97427 0.99208 1.70128 1.18902 1.19534 1.39764 0.86032 0.79575 0.78886 0.81159 1.19174 1.20473 1.20783 1.19831 0.83480 0.83703 0.87662 1.90572 1.55897 1.84452 1.17377 1.20442 1.04193 0.90437 0.97556 1.19475 0.91404 0.96292 0.98649 1.20834 0.98936 0.96013 0.97457 1.17370 0.81396 0.96619 0.98387 1.91456 1.46292 1.90280 1.83776 1.19591 0.91527 0.98771 1.00503 1.20697 1.03205 0.94368 0.98386 1.20764 0.98453 0.97215 0.98577 1.17463 0.81685 0.94976 0.96422 1.91526 1.45789 1.90251 1.83123 0.78566 0.87816 0.91564 0.91900 0.88015 0.88397 0.83951 0.90688 0.91111 0.90961 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.32 19.25 29.55 0.57 -5.75 16 2 C -0.10 -2.52 11.52 -37.12 -0.43 -2.94 16 3 C 0.24 5.92 5.06 -6.83 -0.03 5.89 16 4 N -0.44 -10.79 2.60 -117.94 -0.31 -11.10 16 5 C -0.35 -8.48 9.12 -14.93 -0.14 -8.61 16 6 H 0.10 2.27 6.57 -52.49 -0.34 1.93 16 7 C 0.04 0.96 4.87 -17.47 -0.09 0.88 16 8 N -0.85 -21.63 9.48 55.50 0.53 -21.11 16 9 Si 0.92 18.67 29.60 -169.99 -5.03 13.63 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.46 11.07 7.56 -10.98 -0.08 10.98 16 14 O -0.60 -15.66 15.63 5.55 0.09 -15.57 16 15 C -0.09 -1.67 4.02 -29.03 -0.12 -1.79 16 16 C -0.06 -1.01 4.43 -104.57 -0.46 -1.47 16 17 C -0.11 -1.77 9.65 -39.52 -0.38 -2.15 16 18 C 0.08 1.19 7.24 -39.42 -0.29 0.91 16 19 F -0.14 -1.96 16.48 2.25 0.04 -1.92 16 20 C -0.10 -1.38 5.88 -104.56 -0.62 -1.99 16 21 C -0.11 -1.08 9.83 36.01 0.35 -0.73 16 22 C -0.13 -1.88 9.68 -39.52 -0.38 -2.26 16 23 C 0.11 2.01 7.12 -39.42 -0.28 1.73 16 24 F -0.13 -2.50 16.66 2.25 0.04 -2.47 16 25 H 0.20 3.76 7.80 -54.10 -0.42 3.34 16 26 H 0.10 2.52 6.47 -51.93 -0.34 2.19 16 27 H 0.07 1.55 7.61 -51.93 -0.39 1.15 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.10 1.96 7.90 -51.93 -0.41 1.55 16 30 H 0.10 1.65 7.54 -51.93 -0.39 1.26 16 31 H 0.14 1.96 8.04 -52.49 -0.42 1.54 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.65 7.64 -51.93 -0.40 0.26 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -29.82 319.15 -5.73 -35.54 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.52 Total: 5.49 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.37 Total: -7.32 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.22 Total: -32.20 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.82 -5.73 -35.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295145897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.215 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds