Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47246 * 327.06431 * 3 2 1 5 5 C 1.37101 * 119.99687 * 264.09392 * 4 3 2 6 6 H 1.08001 * 119.99377 * 198.05785 * 5 4 3 7 7 C 1.38941 * 120.00400 * 18.05206 * 5 4 3 8 8 N 1.31414 * 120.00133 * 21.03579 * 7 5 4 9 9 Si 1.86803 * 120.00373 * 201.03331 * 7 5 4 10 10 H 1.48501 * 109.46655 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47340 * 119.99966 * 9 7 5 12 12 H 1.48502 * 109.47038 * 240.00311 * 9 7 5 13 13 C 1.34772 * 119.99947 * 84.09121 * 4 3 2 14 14 O 1.21290 * 120.00139 * 0.02562 * 13 4 3 15 15 C 1.50709 * 119.99835 * 180.02562 * 13 4 3 16 16 C 1.50698 * 109.46886 * 180.02562 * 15 13 4 17 17 C 1.38197 * 120.00563 * 99.99553 * 16 15 13 18 18 C 1.38433 * 120.00352 * 180.02562 * 17 16 15 19 19 F 1.35098 * 120.00153 * 180.02562 * 18 17 16 20 20 C 1.38472 * 119.99466 * 359.97438 * 18 17 16 21 21 C 1.50708 * 119.99679 * 179.97438 * 20 18 17 22 22 C 1.38157 * 120.00557 * 0.02562 * 20 18 17 23 23 C 1.38435 * 119.99329 * 279.98991 * 16 15 13 24 24 F 1.35092 * 120.00418 * 0.02702 * 23 16 15 25 25 H 4.40639 * 5.51330 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46953 * 207.06696 * 3 2 1 27 27 H 1.08994 * 109.47340 * 87.06140 * 3 2 1 28 28 H 0.96996 * 120.00624 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.47138 * 59.99428 * 15 13 4 30 30 H 1.09000 * 109.46550 * 299.99617 * 15 13 4 31 31 H 1.07999 * 120.00226 * 0.04562 * 17 16 15 32 32 H 1.08997 * 109.47189 * 270.02815 * 21 20 18 33 33 H 1.09003 * 109.46634 * 30.02551 * 21 20 18 34 34 H 1.08998 * 109.46473 * 150.02089 * 21 20 18 35 35 H 1.07997 * 120.00394 * 179.69778 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1584 0.7510 5 6 3.4785 -1.0243 2.0714 6 1 4.0997 -1.7695 2.5460 7 6 3.0278 0.0702 2.7990 8 7 1.9744 0.7418 2.3910 9 14 3.9189 0.5873 4.3572 10 1 5.0649 -0.3259 4.5981 11 1 4.4170 1.9778 4.2043 12 1 2.9828 0.5205 5.5081 13 6 3.2468 -2.3564 0.1438 14 8 2.9432 -2.4749 -1.0245 15 6 3.7492 -3.5488 0.9165 16 6 3.7800 -4.7554 0.0142 17 6 4.9714 -5.1616 -0.5561 18 6 4.9995 -6.2697 -1.3855 19 9 6.1644 -6.6671 -1.9425 20 6 3.8339 -6.9713 -1.6431 21 6 3.8644 -8.1773 -2.5464 22 6 2.6427 -6.5652 -1.0730 23 6 2.6146 -5.4569 -0.2433 24 9 1.4498 -5.0595 0.3138 25 1 -1.0498 -0.0002 0.0003 26 1 3.0089 0.9159 0.4676 27 1 3.0094 -0.0519 -1.0262 28 1 1.6594 1.5057 2.8990 29 1 3.0853 -3.7416 1.7592 30 1 4.7546 -3.3454 1.2851 31 1 5.8807 -4.6148 -0.3546 32 1 3.6885 -7.8648 -3.5757 33 1 4.8389 -8.6603 -2.4748 34 1 3.0878 -8.8789 -2.2418 35 1 1.7327 -7.1095 -1.2778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295145897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = -54.466878 kcal Electronic energy + Delta-G solvation = -22971.500247 eV Core-core repulsion = 19185.917243 eV Total energy + Delta-G solvation = -3785.583005 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.93886 -49.93159 -40.83680 -39.73233 -37.04002 -34.84387 -33.79461 -33.27159 -31.18463 -30.88071 -28.41610 -26.92621 -25.73131 -24.08645 -22.47356 -21.07827 -19.67650 -18.54901 -18.45535 -18.16969 -18.03340 -17.73263 -16.88217 -16.35870 -16.27877 -16.14742 -15.88704 -15.34667 -15.26480 -14.62198 -14.56384 -14.19404 -14.11687 -14.05621 -13.77031 -13.72242 -13.38978 -12.84430 -12.79076 -12.66726 -12.53277 -12.40081 -12.06237 -11.93785 -11.24853 -11.22309 -10.63594 -10.46313 -9.94248 -9.85438 -9.41229 -8.27468 -5.92080 -0.06288 0.03327 1.41538 1.51265 1.63152 1.85247 2.09842 2.31542 2.33705 2.40532 3.06254 3.10834 3.22581 3.25254 3.53000 3.64841 3.86880 3.90891 4.12623 4.31935 4.46042 4.53904 4.59805 4.70980 4.77783 4.80839 4.86806 4.92456 5.00384 5.19067 5.19951 5.21240 5.36986 5.46393 5.75992 5.82484 6.36791 7.09646 7.11891 7.51235 7.92915 8.72290 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.004559 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.903662 B = 6139.580131 C = 6715.386276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.145 4.145 3 C 0.244 3.756 4 N -0.447 5.447 5 C -0.366 4.366 6 H 0.117 0.883 7 C -0.002 4.002 8 N -0.877 5.877 9 Si 0.988 3.012 10 H -0.253 1.253 11 H -0.280 1.280 12 H -0.286 1.286 13 C 0.454 3.546 14 O -0.628 6.628 15 C -0.076 4.076 16 C -0.080 4.080 17 C -0.117 4.117 18 C 0.078 3.922 19 F -0.134 7.134 20 C -0.093 4.093 21 C -0.110 4.110 22 C -0.126 4.126 23 C 0.085 3.915 24 F -0.148 7.148 25 H 0.233 0.767 26 H 0.097 0.903 27 H 0.065 0.935 28 H 0.270 0.730 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -12.658 -3.221 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.147 4.147 3 C 0.122 3.878 4 N -0.165 5.165 5 C -0.492 4.492 6 H 0.134 0.866 7 C -0.205 4.205 8 N -0.514 5.514 9 Si 0.812 3.188 10 H -0.177 1.177 11 H -0.205 1.205 12 H -0.213 1.213 13 C 0.244 3.756 14 O -0.516 6.516 15 C -0.116 4.116 16 C -0.082 4.082 17 C -0.135 4.135 18 C 0.058 3.942 19 F -0.113 7.113 20 C -0.094 4.094 21 C -0.166 4.166 22 C -0.144 4.144 23 C 0.065 3.935 24 F -0.127 7.127 25 H 0.250 0.750 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.174 0.826 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.336 -12.523 -3.712 13.763 hybrid contribution -0.247 0.995 0.969 1.411 sum 4.089 -11.529 -2.742 12.536 Atomic orbital electron populations 1.25102 0.96394 1.01584 1.04698 1.23557 0.95249 0.99170 0.96702 1.17958 0.84485 0.90862 0.94543 1.43908 1.55626 1.06177 1.10762 1.20075 1.31784 1.11567 0.85822 0.86552 1.26145 0.95092 0.97111 1.02191 1.70250 1.20145 1.19859 1.41123 0.84958 0.78509 0.78400 0.76970 1.17672 1.20546 1.21262 1.20601 0.82880 0.84484 0.87640 1.90527 1.57158 1.85060 1.18852 1.20324 1.04842 0.89269 0.97118 1.19420 0.92462 0.96352 0.99934 1.20972 0.98743 0.96516 0.97310 1.17482 0.82050 0.96480 0.98159 1.91471 1.46088 1.90145 1.83595 1.20024 0.90482 0.99212 0.99661 1.20831 1.04677 0.93136 0.97976 1.21063 0.99993 0.96128 0.97239 1.17888 0.81088 0.96583 0.97903 1.91467 1.46808 1.90698 1.83703 0.75001 0.88536 0.91750 0.92045 0.88584 0.86246 0.82619 0.89617 0.90264 0.88606 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.04 19.25 74.32 1.43 -10.60 16 2 C -0.15 -7.44 11.52 31.12 0.36 -7.09 16 3 C 0.24 12.29 5.06 84.57 0.43 12.72 16 4 N -0.45 -22.56 2.60 -645.43 -1.68 -24.24 16 5 C -0.37 -17.80 9.12 84.04 0.77 -17.03 16 6 H 0.12 5.15 6.57 -2.91 -0.02 5.13 16 7 C 0.00 -0.07 4.87 84.92 0.41 0.34 16 8 N -0.88 -45.27 9.48 21.66 0.21 -45.06 16 9 Si 0.99 37.98 29.60 68.60 2.03 40.01 16 10 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 11 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.29 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.45 22.04 7.56 87.66 0.66 22.70 16 14 O -0.63 -33.77 15.63 -3.06 -0.05 -33.82 16 15 C -0.08 -2.95 4.02 29.10 0.12 -2.84 16 16 C -0.08 -2.84 4.43 -19.83 -0.09 -2.92 16 17 C -0.12 -3.53 9.65 22.31 0.22 -3.31 16 18 C 0.08 2.12 7.24 22.37 0.16 2.29 16 19 F -0.13 -3.47 16.48 44.97 0.74 -2.73 16 20 C -0.09 -2.25 5.88 -19.83 -0.12 -2.37 16 21 C -0.11 -1.76 9.83 71.24 0.70 -1.06 16 22 C -0.13 -3.38 9.68 22.31 0.22 -3.17 16 23 C 0.08 2.96 7.12 22.37 0.16 3.12 16 24 F -0.15 -5.88 16.66 44.97 0.75 -5.13 16 25 H 0.23 8.51 7.80 -4.43 -0.03 8.48 16 26 H 0.10 4.88 6.47 -2.39 -0.02 4.87 16 27 H 0.06 3.15 7.61 -2.39 -0.02 3.14 16 28 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.10 3.78 7.90 -2.39 -0.02 3.76 16 30 H 0.12 3.97 7.54 -2.39 -0.02 3.95 16 31 H 0.16 4.12 8.04 -2.91 -0.02 4.10 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.17 7.64 -2.39 -0.02 1.16 16 34 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -64.72 319.15 8.55 -56.18 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.12 Total: 24.02 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 5.43 Total: -9.22 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -1.47 Total: -69.30 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.05 Total: -33.82 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 1.49 Total: -7.86 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -64.72 8.55 -56.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295145897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.710 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds