Wall clock time and date at job start Tue Mar 31 2020 07:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47714 * 2 1 4 4 N 1.46492 * 109.47541 * 180.02562 * 3 2 1 5 5 C 1.36724 * 120.00376 * 95.61208 * 4 3 2 6 6 H 1.07993 * 120.00607 * 219.18605 * 5 4 3 7 7 C 1.39122 * 119.99525 * 39.18788 * 5 4 3 8 8 N 1.31322 * 120.00177 * 20.15474 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 200.15875 * 7 5 4 10 10 H 1.48501 * 109.47445 * 89.99925 * 9 7 5 11 11 H 1.48498 * 109.46827 * 209.99704 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99457 * 9 7 5 13 13 C 1.34780 * 120.00082 * 275.33625 * 4 3 2 14 14 O 1.21764 * 120.00117 * 179.97438 * 13 4 3 15 15 C 1.46185 * 119.99950 * 0.02562 * 13 4 3 16 16 C 1.35026 * 120.00155 * 179.97438 * 15 13 4 17 17 C 1.47087 * 119.99603 * 179.97438 * 16 15 13 18 18 C 1.39907 * 120.18789 * 359.73014 * 17 16 15 19 19 C 1.37830 * 119.83653 * 179.74530 * 18 17 16 20 20 C 1.38467 * 120.20347 * 0.54955 * 19 18 17 21 21 C 1.38324 * 120.37870 * 359.69974 * 20 19 18 22 22 C 1.38067 * 120.16014 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.10547 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47063 * 59.99729 * 1 2 3 25 25 H 1.08996 * 109.47609 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47077 * 300.00093 * 1 2 3 27 27 H 1.09002 * 109.47077 * 239.99907 * 2 1 3 28 28 H 1.08997 * 109.47096 * 120.00712 * 2 1 3 29 29 H 1.09002 * 109.46924 * 59.99813 * 3 2 1 30 30 H 1.08997 * 109.47420 * 300.00513 * 3 2 1 31 31 H 0.96997 * 120.00291 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.99972 * 0.02562 * 15 13 4 33 33 H 1.07999 * 119.99873 * 0.02562 * 16 15 13 34 34 H 1.08000 * 120.08159 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.89699 * 180.27281 * 19 18 17 36 36 H 1.08009 * 119.81193 * 179.72184 * 20 19 18 37 37 H 1.07998 * 119.92128 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1882 1.5583 -1.1792 6 1 5.0859 0.9805 -1.3422 7 6 3.7269 2.4207 -2.1686 8 7 2.9033 3.3954 -1.8584 9 14 4.2790 2.1921 -3.9385 10 1 3.3352 1.2839 -4.6381 11 1 4.2991 3.5089 -4.6246 12 1 5.6415 1.6020 -3.9597 13 6 4.1794 1.3336 1.1612 14 8 5.3971 1.3331 1.1607 15 6 3.4490 1.2152 2.4220 16 6 4.1246 1.1057 3.5860 17 6 3.3896 0.9871 4.8545 18 6 1.9906 0.9929 4.8601 19 6 1.3091 0.8760 6.0524 20 6 2.0049 0.7644 7.2444 21 6 3.3881 0.7629 7.2494 22 6 4.0863 0.8735 6.0634 23 17 5.8222 0.8721 6.0714 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9564 -0.8899 31 1 2.5814 3.9964 -2.5482 32 1 2.3691 1.2144 2.4224 33 1 5.2046 1.1061 3.5855 34 1 1.4459 1.0842 3.9320 35 1 0.2291 0.8760 6.0575 36 1 1.4645 0.6777 8.1755 37 1 3.9233 0.6750 8.1833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299150226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:40 Heat of formation + Delta-G solvation = -4.055560 kcal Electronic energy + Delta-G solvation = -20610.436394 eV Core-core repulsion = 17378.836068 eV Total energy + Delta-G solvation = -3231.600326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.38979 -38.51416 -36.38315 -35.36146 -33.76758 -32.78545 -31.24690 -30.81073 -29.36397 -26.07693 -25.03620 -23.56706 -22.55770 -21.14099 -20.58954 -18.13223 -17.49621 -16.84165 -16.21779 -15.46474 -15.18181 -14.87658 -14.31249 -13.90613 -13.77297 -13.75781 -13.52718 -13.46175 -12.92369 -12.55079 -11.97669 -11.75657 -11.66918 -11.53661 -11.46368 -11.40882 -11.11619 -10.92007 -10.75478 -10.58187 -10.38671 -10.33765 -10.04580 -10.00225 -8.99270 -8.88424 -8.46068 -8.00021 -7.48210 -6.41251 -4.01058 0.69628 1.16261 2.17922 2.36615 3.15947 3.23045 3.28114 3.69942 4.09138 4.44016 4.60912 4.71560 4.85165 4.92980 5.04858 5.22891 5.26044 5.51581 5.56483 5.58942 5.65945 5.77227 5.90929 6.01352 6.13067 6.14284 6.23397 6.32696 6.35286 6.41404 6.54491 6.71857 6.81699 6.90209 6.94166 7.18286 7.51410 8.23533 8.47859 9.14980 9.33089 9.99655 10.62544 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.004144 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.352271 B = 6755.339335 C = 7791.656688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.105 3.895 4 N -0.425 5.425 5 C -0.306 4.306 6 H 0.093 0.907 7 C 0.039 3.961 8 N -0.862 5.862 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.474 3.526 14 O -0.583 6.583 15 C -0.144 4.144 16 C -0.098 4.098 17 C -0.032 4.032 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.031 4.031 23 Cl -0.064 7.064 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.270 0.730 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -4.937 13.714 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.181 4.181 3 C -0.020 4.020 4 N -0.141 5.141 5 C -0.434 4.434 6 H 0.110 0.890 7 C -0.166 4.166 8 N -0.498 5.498 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.265 3.735 14 O -0.469 6.469 15 C -0.165 4.165 16 C -0.119 4.119 17 C -0.032 4.032 18 C -0.123 4.123 19 C -0.131 4.131 20 C -0.137 4.137 21 C -0.129 4.129 22 C -0.058 4.058 23 Cl -0.035 7.035 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.529 -4.759 13.541 15.768 hybrid contribution 0.143 0.057 -0.827 0.842 sum -6.386 -4.703 12.714 14.984 Atomic orbital electron populations 1.21681 0.96254 1.00785 1.01561 1.22020 0.94960 0.99081 1.02003 1.21629 0.82156 0.94487 1.03685 1.43396 1.04588 1.61109 1.05036 1.19473 1.10594 1.22882 0.90475 0.88958 1.25470 0.96981 0.93401 1.00783 1.69904 1.32516 1.13351 1.34063 0.86038 0.79594 0.77773 0.82048 1.20175 1.20875 1.19144 1.18205 0.87659 0.83892 0.83780 1.90655 1.13583 1.55800 1.86843 1.23501 0.99892 0.99078 0.94025 1.22162 1.00553 0.99510 0.89655 1.19013 0.93078 0.98863 0.92292 1.21448 0.92615 0.99319 0.98962 1.21156 1.00257 0.99450 0.92249 1.21128 0.93293 1.00797 0.98441 1.20947 0.94379 1.00961 0.96614 1.21141 0.84789 1.05384 0.94478 1.98373 1.09543 1.96796 1.98743 0.92709 0.93335 0.93177 0.91590 0.92934 0.93199 0.87592 0.91997 0.86300 0.84443 0.84668 0.85384 0.85366 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.14 -2.49 6.11 -26.73 -0.16 -2.65 16 3 C 0.10 2.21 4.55 -4.05 -0.02 2.19 16 4 N -0.42 -10.78 2.51 -116.49 -0.29 -11.07 16 5 C -0.31 -8.44 8.86 -15.04 -0.13 -8.58 16 6 H 0.09 2.67 7.79 -52.49 -0.41 2.26 16 7 C 0.04 1.03 4.91 -17.44 -0.09 0.94 16 8 N -0.86 -22.88 11.59 55.50 0.64 -22.24 16 9 Si 0.92 20.29 29.60 -169.99 -5.03 15.26 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.47 11.99 7.52 -13.07 -0.10 11.89 16 14 O -0.58 -16.92 16.12 5.13 0.08 -16.84 16 15 C -0.14 -2.86 8.13 -37.53 -0.30 -3.16 16 16 C -0.10 -1.81 9.07 -37.14 -0.34 -2.14 16 17 C -0.03 -0.48 5.87 -105.03 -0.62 -1.10 16 18 C -0.11 -1.35 9.41 -39.11 -0.37 -1.72 16 19 C -0.11 -1.17 10.03 -39.65 -0.40 -1.56 16 20 C -0.12 -1.15 10.04 -39.47 -0.40 -1.54 16 21 C -0.11 -1.22 9.82 -39.61 -0.39 -1.61 16 22 C -0.03 -0.43 6.36 -38.99 -0.25 -0.68 16 23 Cl -0.06 -0.90 27.44 -51.86 -1.42 -2.32 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.89 7.57 -51.93 -0.39 0.50 16 29 H 0.05 0.97 6.41 -51.93 -0.33 0.64 16 30 H 0.11 2.46 5.68 -51.93 -0.29 2.17 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.12 2.01 4.16 -52.49 -0.22 1.80 16 33 H 0.14 2.77 6.44 -52.49 -0.34 2.44 16 34 H 0.14 1.61 6.17 -52.49 -0.32 1.28 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -31.07 328.42 -8.66 -39.73 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.40 Total: 3.89 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.19 Total: -11.36 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.35 Total: -33.31 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.08 Total: -16.84 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.42 Total: -2.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.07 -8.66 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299150226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.673 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds