Wall clock time and date at job start Tue Mar 31 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47714 * 2 1 4 4 N 1.46492 * 109.47541 * 180.02562 * 3 2 1 5 5 C 1.36724 * 120.00376 * 95.61208 * 4 3 2 6 6 H 1.07993 * 120.00607 * 219.18605 * 5 4 3 7 7 C 1.39122 * 119.99525 * 39.18788 * 5 4 3 8 8 N 1.31322 * 120.00177 * 20.15474 * 7 5 4 9 9 Si 1.86798 * 119.99663 * 200.15875 * 7 5 4 10 10 H 1.48501 * 109.47445 * 89.99925 * 9 7 5 11 11 H 1.48498 * 109.46827 * 209.99704 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99457 * 9 7 5 13 13 C 1.34780 * 120.00082 * 275.33625 * 4 3 2 14 14 O 1.21764 * 120.00117 * 179.97438 * 13 4 3 15 15 C 1.46185 * 119.99950 * 0.02562 * 13 4 3 16 16 C 1.35026 * 120.00155 * 179.97438 * 15 13 4 17 17 C 1.47087 * 119.99603 * 179.97438 * 16 15 13 18 18 C 1.39907 * 120.18789 * 359.73014 * 17 16 15 19 19 C 1.37830 * 119.83653 * 179.74530 * 18 17 16 20 20 C 1.38467 * 120.20347 * 0.54955 * 19 18 17 21 21 C 1.38324 * 120.37870 * 359.69974 * 20 19 18 22 22 C 1.38067 * 120.16014 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.10547 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47063 * 59.99729 * 1 2 3 25 25 H 1.08996 * 109.47609 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47077 * 300.00093 * 1 2 3 27 27 H 1.09002 * 109.47077 * 239.99907 * 2 1 3 28 28 H 1.08997 * 109.47096 * 120.00712 * 2 1 3 29 29 H 1.09002 * 109.46924 * 59.99813 * 3 2 1 30 30 H 1.08997 * 109.47420 * 300.00513 * 3 2 1 31 31 H 0.96997 * 120.00291 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.99972 * 0.02562 * 15 13 4 33 33 H 1.07999 * 119.99873 * 0.02562 * 16 15 13 34 34 H 1.08000 * 120.08159 * 0.02562 * 18 17 16 35 35 H 1.08000 * 119.89699 * 180.27281 * 19 18 17 36 36 H 1.08009 * 119.81193 * 179.72184 * 20 19 18 37 37 H 1.07998 * 119.92128 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1882 1.5583 -1.1792 6 1 5.0859 0.9805 -1.3422 7 6 3.7269 2.4207 -2.1686 8 7 2.9033 3.3954 -1.8584 9 14 4.2790 2.1921 -3.9385 10 1 3.3352 1.2839 -4.6381 11 1 4.2991 3.5089 -4.6246 12 1 5.6415 1.6020 -3.9597 13 6 4.1794 1.3336 1.1612 14 8 5.3971 1.3331 1.1607 15 6 3.4490 1.2152 2.4220 16 6 4.1246 1.1057 3.5860 17 6 3.3896 0.9871 4.8545 18 6 1.9906 0.9929 4.8601 19 6 1.3091 0.8760 6.0524 20 6 2.0049 0.7644 7.2444 21 6 3.3881 0.7629 7.2494 22 6 4.0863 0.8735 6.0634 23 17 5.8222 0.8721 6.0714 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9564 -0.8899 31 1 2.5814 3.9964 -2.5482 32 1 2.3691 1.2144 2.4224 33 1 5.2046 1.1061 3.5855 34 1 1.4459 1.0842 3.9320 35 1 0.2291 0.8760 6.0575 36 1 1.4645 0.6777 8.1755 37 1 3.9233 0.6750 8.1833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299150226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:39 Heat of formation + Delta-G solvation = -20.877772 kcal Electronic energy + Delta-G solvation = -20611.165860 eV Core-core repulsion = 17378.836068 eV Total energy + Delta-G solvation = -3232.329792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69610 -40.06353 -37.44204 -37.20240 -35.16762 -34.44298 -33.03727 -31.72677 -30.63464 -27.79877 -26.63177 -24.91421 -23.57882 -22.55155 -22.00596 -19.74599 -18.97414 -18.54230 -17.57762 -17.05751 -16.49947 -16.21701 -15.77583 -15.55454 -15.37692 -14.83113 -14.76849 -14.62582 -14.38212 -14.03642 -13.48200 -13.34958 -13.10201 -13.01470 -12.69878 -12.59861 -12.55947 -12.34205 -12.13512 -12.00545 -11.99213 -11.71635 -11.56250 -11.32312 -10.91398 -10.47185 -9.81837 -9.50584 -9.18491 -8.40074 -6.10808 -0.47503 0.26029 1.03990 1.14428 1.39629 1.40718 1.51867 2.26182 2.47165 2.79773 3.02788 3.06413 3.66784 3.73887 4.00256 4.11276 4.22566 4.25913 4.34202 4.37892 4.43857 4.60099 4.69906 4.76813 4.95740 4.96777 5.00628 5.14976 5.23978 5.29722 5.37078 5.39420 5.44936 5.49876 5.55442 5.59331 5.86500 6.19100 6.52903 7.14087 7.39656 8.04122 8.62808 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.004144 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.352271 B = 6755.339335 C = 7791.656688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.107 3.893 4 N -0.437 5.437 5 C -0.347 4.347 6 H 0.061 0.939 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.983 3.017 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.276 1.276 13 C 0.460 3.540 14 O -0.640 6.640 15 C -0.172 4.172 16 C -0.065 4.065 17 C -0.071 4.071 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.041 4.041 23 Cl -0.079 7.079 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.277 0.723 32 H 0.151 0.849 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -5.423 16.012 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C -0.016 4.016 4 N -0.153 5.153 5 C -0.475 4.475 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.519 5.519 9 Si 0.806 3.194 10 H -0.183 1.183 11 H -0.198 1.198 12 H -0.201 1.201 13 C 0.253 3.747 14 O -0.530 6.530 15 C -0.193 4.193 16 C -0.086 4.086 17 C -0.072 4.072 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.068 4.068 23 Cl -0.050 7.050 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.168 0.832 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.869 -5.247 15.847 19.392 hybrid contribution 1.148 0.203 -1.235 1.699 sum -8.721 -5.044 14.611 17.748 Atomic orbital electron populations 1.21636 0.92818 1.02558 1.02425 1.21913 0.97769 0.96202 1.01290 1.21739 0.79729 0.96905 1.03266 1.43635 1.06246 1.60934 1.04483 1.19379 1.11126 1.24415 0.92590 0.92095 1.26188 0.96742 0.92484 1.04091 1.69960 1.32957 1.13551 1.35400 0.85106 0.78891 0.78192 0.77219 1.18296 1.19832 1.20122 1.19071 0.87424 0.82627 0.85581 1.90589 1.16112 1.58357 1.87967 1.23161 1.00902 1.03627 0.91583 1.22240 0.99616 0.95475 0.91255 1.18911 0.94310 1.03059 0.90880 1.21661 0.91412 0.98434 1.00682 1.21599 1.02112 0.97692 0.91204 1.21692 0.92618 0.97011 0.99999 1.21312 0.95370 1.00222 0.96309 1.21397 0.84217 1.05872 0.95271 1.98370 1.10982 1.96893 1.98776 0.93077 0.91088 0.91105 0.93665 0.92347 0.91560 0.89763 0.91352 0.83179 0.87120 0.83952 0.81733 0.81229 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.13 -4.64 6.11 30.59 0.19 -4.45 16 3 C 0.11 4.60 4.55 86.38 0.39 4.99 16 4 N -0.44 -23.37 2.51 -640.64 -1.61 -24.98 16 5 C -0.35 -20.32 8.86 84.14 0.75 -19.58 16 6 H 0.06 3.84 7.79 -2.91 -0.02 3.82 16 7 C 0.01 0.48 4.91 84.98 0.42 0.90 16 8 N -0.88 -47.87 11.59 21.69 0.25 -47.62 16 9 Si 0.98 42.69 29.60 68.60 2.03 44.72 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.46 24.74 7.52 86.31 0.65 25.39 16 14 O -0.64 -40.12 16.12 -4.55 -0.07 -40.19 16 15 C -0.17 -7.05 8.13 23.60 0.19 -6.86 16 16 C -0.06 -2.47 9.07 23.85 0.22 -2.25 16 17 C -0.07 -2.07 5.87 -20.13 -0.12 -2.19 16 18 C -0.10 -2.33 9.41 22.58 0.21 -2.12 16 19 C -0.11 -1.66 10.03 22.23 0.22 -1.44 16 20 C -0.10 -1.31 10.04 22.34 0.22 -1.09 16 21 C -0.11 -2.10 9.82 22.25 0.22 -1.88 16 22 C -0.04 -1.07 6.36 22.65 0.14 -0.93 16 23 Cl -0.08 -2.25 27.44 -2.72 -0.07 -2.32 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.95 7.57 -2.39 -0.02 1.93 16 29 H 0.07 2.57 6.41 -2.39 -0.02 2.55 16 30 H 0.08 4.01 5.68 -2.39 -0.01 3.99 16 31 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.15 5.00 4.16 -2.91 -0.01 4.99 16 33 H 0.11 4.77 6.44 -2.91 -0.02 4.76 16 34 H 0.14 2.93 6.17 -2.91 -0.02 2.91 16 35 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -74.12 328.42 6.03 -68.09 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.08 Total: 16.55 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.42 Total: -14.24 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.36 Total: -72.61 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.07 Total: -40.19 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -74.12 6.03 -68.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299150226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.212 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds