Wall clock time and date at job start Tue Mar 31 2020 06:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39973 * 120.46791 * 123.09191 * 3 2 1 5 5 C 1.38344 * 118.35743 * 180.02562 * 4 3 2 6 6 C 1.39386 * 119.20043 * 0.02562 * 5 4 3 7 7 C 1.48174 * 119.56456 * 179.97438 * 6 5 4 8 8 O 1.21525 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00141 * 179.97438 * 7 6 5 10 10 C 1.39831 * 119.99603 * 174.89300 * 9 7 6 11 11 C 1.39316 * 119.95243 * 325.50901 * 10 9 7 12 12 C 1.38480 * 120.42396 * 179.76472 * 11 10 9 13 13 C 1.37693 * 120.32677 * 0.51461 * 12 11 10 14 14 C 1.40749 * 119.89034 * 359.74466 * 13 12 11 15 15 C 1.41410 * 120.20911 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99663 * 205.16699 * 15 14 13 17 17 C 1.39931 * 119.99694 * 25.17575 * 15 14 13 18 18 N 1.30821 * 120.00508 * 16.80327 * 17 15 14 19 19 Si 1.86796 * 119.99412 * 196.80773 * 17 15 14 20 20 H 1.48501 * 109.47567 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47424 * 120.00204 * 19 17 15 22 22 H 1.48510 * 109.47064 * 239.99765 * 19 17 15 23 23 C 1.38280 * 119.94776 * 145.78871 * 10 9 7 24 24 N 1.32770 * 120.87561 * 359.97438 * 6 5 4 25 25 C 1.31367 * 121.79852 * 0.02562 * 24 6 5 26 26 H 1.08007 * 120.82625 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.39523 * 179.72058 * 5 4 3 28 28 H 0.96998 * 119.99714 * 354.89483 * 9 7 6 29 29 H 1.07998 * 119.79030 * 0.02869 * 11 10 9 30 30 H 1.07997 * 119.84040 * 180.24259 * 12 11 10 31 31 H 1.07999 * 120.05898 * 179.76653 * 13 12 11 32 32 H 0.96997 * 120.00366 * 180.02562 * 18 17 15 33 33 H 1.07996 * 120.16045 * 359.95601 * 23 10 9 34 34 H 1.08000 * 119.64830 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2775 0.6597 -1.0108 5 6 4.6600 0.6320 -0.9684 6 6 5.2951 -0.0461 0.0707 7 6 6.7755 -0.0814 0.1237 8 8 7.4277 0.4783 -0.7356 9 7 7.3987 -0.7341 1.1247 10 6 8.7914 -0.8588 1.1176 11 6 9.4708 -1.0015 -0.0903 12 6 10.8503 -1.1209 -0.1090 13 6 11.5651 -1.1105 1.0678 14 6 10.8920 -0.9725 2.2961 15 6 11.6195 -0.9604 3.5087 16 1 11.1399 -1.2594 4.4291 17 6 12.9605 -0.5609 3.5160 18 7 13.4507 0.1036 2.5014 19 14 14.0508 -0.9767 4.9747 20 1 13.2620 -1.7278 5.9842 21 1 15.1923 -1.8096 4.5181 22 1 14.5648 0.2773 5.5819 23 6 9.4917 -0.8462 2.3099 24 7 4.5911 -0.6610 1.0137 25 6 3.2775 -0.6582 1.0094 26 1 2.7585 1.1763 -1.8046 27 1 5.2402 1.1257 -1.7339 28 1 6.8810 -1.1173 1.8500 29 1 8.9185 -1.0148 -1.0182 30 1 11.3677 -1.2271 -1.0510 31 1 12.6406 -1.2077 1.0483 32 1 14.3804 0.3802 2.5063 33 1 8.9657 -0.7395 3.2470 34 1 2.7396 -1.1693 1.7942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313526720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:44 Heat of formation + Delta-G solvation = 55.076943 kcal Electronic energy + Delta-G solvation = -20795.665783 eV Core-core repulsion = 17465.522141 eV Total energy + Delta-G solvation = -3330.143642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02486 -39.39013 -37.30245 -36.93783 -34.60442 -33.44326 -32.86929 -32.03677 -29.86661 -28.44337 -25.76978 -25.23200 -24.15157 -22.02911 -20.99687 -20.06429 -19.57027 -18.09677 -17.67755 -17.00481 -15.57618 -15.39987 -15.28094 -15.01222 -14.77893 -14.62873 -14.30095 -13.89512 -13.75660 -13.42452 -13.37940 -12.96311 -12.91139 -12.57717 -12.26632 -11.71349 -11.24692 -11.17354 -10.95441 -10.62127 -10.46545 -10.37426 -10.15094 -9.69516 -9.60443 -9.56883 -9.24574 -9.00717 -7.49882 -6.98066 -6.74709 -4.38297 -0.18913 0.70821 2.12993 2.13911 2.71085 2.79164 3.07481 3.09300 3.12504 3.15800 3.24937 3.35660 3.67311 3.85130 3.93287 4.16666 4.50141 4.54923 4.63306 4.81755 5.24237 5.40489 5.46560 5.65729 5.95697 6.25589 6.48423 6.67342 6.89699 6.90438 6.95678 7.01385 7.22129 7.24088 7.53091 7.62482 7.90908 8.00796 8.08417 8.26393 8.45932 8.63407 8.87246 8.93534 10.18910 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.002803 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.388381 B = 9988.415750 C =10559.869097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.257 3.743 3 C -0.069 4.069 4 C -0.029 4.029 5 C -0.114 4.114 6 C 0.120 3.880 7 C 0.555 3.445 8 O -0.508 6.508 9 N -0.639 5.639 10 C 0.148 3.852 11 C -0.226 4.226 12 C -0.095 4.095 13 C -0.165 4.165 14 C 0.121 3.879 15 C -0.463 4.463 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.239 4.239 24 N -0.456 5.456 25 C 0.154 3.846 26 H 0.153 0.847 27 H 0.162 0.838 28 H 0.411 0.589 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.280 0.720 33 H 0.097 0.903 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 -0.523 -3.671 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.059 4.059 3 C -0.075 4.075 4 C -0.057 4.057 5 C -0.135 4.135 6 C -0.018 4.018 7 C 0.339 3.661 8 O -0.383 6.383 9 N -0.282 5.282 10 C 0.056 3.944 11 C -0.247 4.247 12 C -0.114 4.114 13 C -0.185 4.185 14 C 0.118 3.882 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.201 1.201 23 C -0.260 4.260 24 N -0.166 5.166 25 C -0.009 4.009 26 H 0.171 0.829 27 H 0.180 0.820 28 H 0.248 0.752 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.067 -0.437 -3.712 15.523 hybrid contribution 0.190 0.222 0.345 0.452 sum -14.877 -0.215 -3.368 15.254 Atomic orbital electron populations 1.81303 1.11775 1.07706 1.07137 1.25331 0.92180 0.94145 0.94235 1.17161 0.85711 1.04697 0.99907 1.21690 0.93647 0.94191 0.96195 1.22136 0.94163 0.98084 0.99096 1.21688 0.95058 0.93735 0.91353 1.17818 0.85164 0.79974 0.83124 1.90842 1.65077 1.43784 1.38585 1.43291 1.07073 1.53203 1.24659 1.17436 0.79629 1.02227 0.95084 1.20290 0.94269 1.14854 0.95239 1.20580 0.93194 1.00515 0.97134 1.21403 0.99985 1.05534 0.91531 1.17386 0.89980 0.87408 0.93429 1.19550 0.94973 1.39822 0.94918 0.90363 1.25895 0.98592 0.92435 0.97279 1.69830 1.15613 1.26005 1.30429 0.86271 0.79880 0.79098 0.81508 1.18421 1.19724 1.20052 1.20730 0.94795 1.16166 0.94324 1.67730 1.07839 1.16718 1.24355 1.22982 0.89169 0.93374 0.95371 0.82939 0.81993 0.75242 0.88129 0.88926 0.86237 0.90906 0.88474 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.26 18.54 41.84 0.78 -3.49 16 2 C 0.26 2.10 15.36 -22.47 -0.35 1.76 16 3 C -0.07 -0.49 5.75 -106.71 -0.61 -1.10 16 4 C -0.03 -0.19 9.89 -38.89 -0.38 -0.58 16 5 C -0.11 -1.05 9.61 -39.12 -0.38 -1.42 16 6 C 0.12 1.45 6.75 -82.95 -0.56 0.89 16 7 C 0.56 9.22 7.54 -12.18 -0.09 9.13 16 8 O -0.51 -10.01 14.05 5.34 0.08 -9.94 16 9 N -0.64 -11.28 5.31 -10.67 -0.06 -11.34 16 10 C 0.15 3.25 6.24 -83.79 -0.52 2.73 16 11 C -0.23 -5.18 8.66 -39.09 -0.34 -5.52 16 12 C -0.10 -2.25 10.02 -39.69 -0.40 -2.65 16 13 C -0.16 -4.23 8.69 -38.83 -0.34 -4.57 16 14 C 0.12 3.15 5.57 -106.85 -0.59 2.56 16 15 C -0.46 -11.96 9.05 -37.74 -0.34 -12.31 16 16 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 17 C 0.08 1.86 5.15 -17.35 -0.09 1.78 16 18 N -0.79 -20.27 10.94 55.55 0.61 -19.66 16 19 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.24 -5.64 9.70 -38.67 -0.38 -6.02 16 24 N -0.46 -4.83 9.52 -9.47 -0.09 -4.92 16 25 C 0.15 1.17 10.91 -17.14 -0.19 0.99 16 26 H 0.15 0.58 8.06 -52.48 -0.42 0.15 16 27 H 0.16 1.41 7.63 -52.49 -0.40 1.01 16 28 H 0.41 6.18 8.15 -40.82 -0.33 5.84 16 29 H 0.10 2.24 6.47 -52.49 -0.34 1.90 16 30 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 32 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 33 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 315.03 15.07 4.75 4.75 Total: -1.00 -30.30 315.03 -7.16 -37.47 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.64 Total: 8.21 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -5.56 Total: -14.34 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 1.24 Total: -39.41 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.30 -7.16 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313526720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.545 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds