Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39973 * 120.46791 * 123.09191 * 3 2 1 5 5 C 1.38344 * 118.35743 * 180.02562 * 4 3 2 6 6 C 1.39386 * 119.20043 * 0.02562 * 5 4 3 7 7 C 1.48174 * 119.56456 * 179.97438 * 6 5 4 8 8 O 1.21525 * 119.99750 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00141 * 179.97438 * 7 6 5 10 10 C 1.39831 * 119.99603 * 174.89300 * 9 7 6 11 11 C 1.39316 * 119.95243 * 325.50901 * 10 9 7 12 12 C 1.38480 * 120.42396 * 179.76472 * 11 10 9 13 13 C 1.37693 * 120.32677 * 0.51461 * 12 11 10 14 14 C 1.40749 * 119.89034 * 359.74466 * 13 12 11 15 15 C 1.41410 * 120.20911 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99663 * 205.16699 * 15 14 13 17 17 C 1.39931 * 119.99694 * 25.17575 * 15 14 13 18 18 N 1.30821 * 120.00508 * 16.80327 * 17 15 14 19 19 Si 1.86796 * 119.99412 * 196.80773 * 17 15 14 20 20 H 1.48501 * 109.47567 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47424 * 120.00204 * 19 17 15 22 22 H 1.48510 * 109.47064 * 239.99765 * 19 17 15 23 23 C 1.38280 * 119.94776 * 145.78871 * 10 9 7 24 24 N 1.32770 * 120.87561 * 359.97438 * 6 5 4 25 25 C 1.31367 * 121.79852 * 0.02562 * 24 6 5 26 26 H 1.08007 * 120.82625 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.39523 * 179.72058 * 5 4 3 28 28 H 0.96998 * 119.99714 * 354.89483 * 9 7 6 29 29 H 1.07998 * 119.79030 * 0.02869 * 11 10 9 30 30 H 1.07997 * 119.84040 * 180.24259 * 12 11 10 31 31 H 1.07999 * 120.05898 * 179.76653 * 13 12 11 32 32 H 0.96997 * 120.00366 * 180.02562 * 18 17 15 33 33 H 1.07996 * 120.16045 * 359.95601 * 23 10 9 34 34 H 1.08000 * 119.64830 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2775 0.6597 -1.0108 5 6 4.6600 0.6320 -0.9684 6 6 5.2951 -0.0461 0.0707 7 6 6.7755 -0.0814 0.1237 8 8 7.4277 0.4783 -0.7356 9 7 7.3987 -0.7341 1.1247 10 6 8.7914 -0.8588 1.1176 11 6 9.4708 -1.0015 -0.0903 12 6 10.8503 -1.1209 -0.1090 13 6 11.5651 -1.1105 1.0678 14 6 10.8920 -0.9725 2.2961 15 6 11.6195 -0.9604 3.5087 16 1 11.1399 -1.2594 4.4291 17 6 12.9605 -0.5609 3.5160 18 7 13.4507 0.1036 2.5014 19 14 14.0508 -0.9767 4.9747 20 1 13.2620 -1.7278 5.9842 21 1 15.1923 -1.8096 4.5181 22 1 14.5648 0.2773 5.5819 23 6 9.4917 -0.8462 2.3099 24 7 4.5911 -0.6610 1.0137 25 6 3.2775 -0.6582 1.0094 26 1 2.7585 1.1763 -1.8046 27 1 5.2402 1.1257 -1.7339 28 1 6.8810 -1.1173 1.8500 29 1 8.9185 -1.0148 -1.0182 30 1 11.3677 -1.2271 -1.0510 31 1 12.6406 -1.2077 1.0483 32 1 14.3804 0.3802 2.5063 33 1 8.9657 -0.7395 3.2470 34 1 2.7396 -1.1693 1.7942 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313526720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = 37.041044 kcal Electronic energy + Delta-G solvation = -20796.447878 eV Core-core repulsion = 17465.522141 eV Total energy + Delta-G solvation = -3330.925737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96184 -40.66166 -38.94748 -37.75730 -36.22646 -34.95105 -33.85397 -32.84426 -31.75650 -30.09065 -27.21542 -26.68285 -24.82257 -23.45751 -22.79554 -21.61487 -20.25708 -19.50039 -19.16188 -17.93956 -17.32086 -16.75519 -16.62780 -16.24467 -16.15669 -15.57298 -15.41102 -14.93467 -14.89309 -14.57294 -14.35103 -14.15635 -14.11975 -14.00308 -13.53635 -13.31708 -12.97443 -12.88981 -12.72363 -12.30212 -11.94327 -11.45363 -11.35589 -11.11889 -11.09384 -10.87223 -10.64281 -10.36655 -9.40334 -8.77194 -8.58702 -6.33745 -0.96618 0.08996 0.84111 0.98650 1.41584 1.43056 1.47401 1.56217 1.58234 1.99931 2.09606 2.24484 2.55825 2.73718 2.81861 3.01077 3.59854 3.68218 3.74303 3.83359 4.01606 4.43895 4.65199 4.66990 4.74786 4.84142 5.02746 5.04582 5.12512 5.21267 5.29770 5.35306 5.73458 5.83478 6.08999 6.11844 6.22383 6.28886 6.46460 6.65785 6.71632 6.94787 6.97808 7.16014 8.36703 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.002803 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.388381 B = 9988.415750 C =10559.869097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.285 3.715 3 C -0.054 4.054 4 C -0.008 4.008 5 C -0.109 4.109 6 C 0.098 3.902 7 C 0.556 3.444 8 O -0.544 6.544 9 N -0.640 5.640 10 C 0.159 3.841 11 C -0.235 4.235 12 C -0.096 4.096 13 C -0.193 4.193 14 C 0.094 3.906 15 C -0.495 4.495 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.252 4.252 24 N -0.472 5.472 25 C 0.160 3.840 26 H 0.189 0.811 27 H 0.165 0.835 28 H 0.424 0.576 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.288 0.712 33 H 0.109 0.891 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 -0.471 -3.442 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.031 4.031 3 C -0.060 4.060 4 C -0.036 4.036 5 C -0.130 4.130 6 C -0.039 4.039 7 C 0.343 3.657 8 O -0.421 6.421 9 N -0.284 5.284 10 C 0.066 3.934 11 C -0.256 4.256 12 C -0.115 4.115 13 C -0.213 4.213 14 C 0.091 3.909 15 C -0.524 4.524 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.805 3.195 20 H -0.179 1.179 21 H -0.190 1.190 22 H -0.193 1.193 23 C -0.273 4.273 24 N -0.182 5.182 25 C -0.003 4.003 26 H 0.206 0.794 27 H 0.183 0.817 28 H 0.262 0.738 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.083 -0.388 -3.488 17.440 hybrid contribution 0.601 0.241 0.186 0.674 sum -16.482 -0.148 -3.301 16.810 Atomic orbital electron populations 1.81359 1.12925 1.08935 1.08372 1.25195 0.91866 0.92965 0.93047 1.17144 0.85053 1.04034 0.99723 1.21996 0.92346 0.92837 0.96379 1.22182 0.95246 0.97403 0.98174 1.21052 0.92314 0.96826 0.93682 1.18478 0.87256 0.78326 0.81623 1.90810 1.66679 1.45011 1.39603 1.43240 1.05365 1.53909 1.25868 1.17457 0.81814 0.99911 0.94185 1.20460 0.94162 1.15031 0.95950 1.20818 0.93737 0.99575 0.97393 1.21340 0.99453 1.08101 0.92394 1.17761 0.91304 0.87958 0.93889 1.19827 0.96319 1.41228 0.95020 0.90169 1.26786 0.99474 0.91595 1.00264 1.69891 1.16385 1.26530 1.32398 0.85130 0.77702 0.78988 0.77692 1.17923 1.18981 1.19294 1.20884 0.94326 1.16587 0.95516 1.67639 1.09159 1.17143 1.24299 1.23413 0.88062 0.92849 0.95987 0.79407 0.81740 0.73777 0.87458 0.86997 0.87730 0.90143 0.87302 0.78070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.15 18.54 19.01 0.35 -7.80 16 2 C 0.29 3.69 15.36 88.33 1.36 5.05 16 3 C -0.05 -0.56 5.75 -21.22 -0.12 -0.68 16 4 C -0.01 -0.07 9.89 22.72 0.22 0.15 16 5 C -0.11 -1.74 9.61 22.57 0.22 -1.52 16 6 C 0.10 2.22 6.75 41.92 0.28 2.51 16 7 C 0.56 18.29 7.54 86.88 0.65 18.95 16 8 O -0.54 -21.52 14.05 -3.80 -0.05 -21.57 16 9 N -0.64 -22.49 5.31 -305.95 -1.63 -24.12 16 10 C 0.16 7.11 6.24 38.13 0.24 7.35 16 11 C -0.23 -10.97 8.66 22.59 0.20 -10.77 16 12 C -0.10 -4.67 10.02 22.20 0.22 -4.45 16 13 C -0.19 -10.31 8.69 22.75 0.20 -10.11 16 14 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 15 C -0.49 -26.28 9.05 23.46 0.21 -26.07 16 16 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 17 C 0.03 1.68 5.15 85.25 0.44 2.12 16 18 N -0.83 -43.31 10.94 21.82 0.24 -43.07 16 19 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 23 C -0.25 -12.18 9.70 22.86 0.22 -11.96 16 24 N -0.47 -8.99 9.52 -183.88 -1.75 -10.74 16 25 C 0.16 1.92 10.91 85.16 0.93 2.85 16 26 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 27 H 0.17 2.56 7.63 -2.91 -0.02 2.53 16 28 H 0.42 12.54 8.15 -92.71 -0.76 11.78 16 29 H 0.11 4.82 6.47 -2.91 -0.02 4.80 16 30 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.10 5.80 6.17 -2.91 -0.02 5.78 16 32 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 33 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -68.06 315.03 4.76 -63.30 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.42 Total: 25.93 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.15 Total: -21.66 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.79 Total: -85.73 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -68.06 4.76 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313526720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.341 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds