Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48507 * 109.47101 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47433 * 29.99552 * 3 2 1 6 6 H 1.48500 * 109.47086 * 150.00190 * 3 2 1 7 7 C 1.37877 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00138 * 250.70820 * 10 9 7 12 12 C 1.52993 * 109.47285 * 272.86499 * 11 10 9 13 13 F 1.39908 * 109.47385 * 65.04916 * 12 11 10 14 14 F 1.39899 * 109.47190 * 185.04408 * 12 11 10 15 15 F 1.39894 * 109.47251 * 305.04856 * 12 11 10 16 16 C 1.34774 * 120.00073 * 70.71325 * 10 9 7 17 17 O 1.21617 * 119.99944 * 184.34255 * 16 10 9 18 18 C 1.47101 * 120.00032 * 4.33360 * 16 10 9 19 19 C 1.32083 * 118.88069 * 211.48418 * 18 16 10 20 20 C 1.50268 * 122.58028 * 180.64784 * 19 18 16 21 21 O 1.43064 * 110.00452 * 343.87516 * 20 19 18 22 22 C 1.43269 * 112.91865 * 50.93617 * 21 20 19 23 23 C 1.50421 * 118.87594 * 31.50838 * 18 16 10 24 24 H 0.97002 * 119.99451 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46770 * 60.00450 * 9 7 2 26 26 H 1.08993 * 109.47557 * 300.00532 * 9 7 2 27 27 H 1.09005 * 109.46732 * 32.86409 * 11 10 9 28 28 H 1.08996 * 109.47002 * 152.86264 * 11 10 9 29 29 H 1.08005 * 118.70906 * 0.37439 * 19 18 16 30 30 H 1.09002 * 109.36255 * 104.26942 * 20 19 18 31 31 H 1.09002 * 109.36857 * 223.88142 * 20 19 18 32 32 H 1.08994 * 109.64045 * 171.27600 * 22 21 20 33 33 H 1.09000 * 109.64226 * 50.65929 * 22 21 20 34 34 H 1.09009 * 109.45080 * 283.37393 * 23 18 16 35 35 H 1.09001 * 109.45328 * 43.30230 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.6396 -3.1260 1.1975 12 6 6.1346 -2.8018 1.1718 13 9 6.3131 -1.4170 1.2616 14 9 6.7655 -3.4243 2.2541 15 9 6.6922 -3.2672 -0.0238 16 6 3.8605 -3.3394 -1.1014 17 8 4.1936 -4.5088 -1.0763 18 6 3.3055 -2.7590 -2.3338 19 6 2.6057 -3.5323 -3.1443 20 6 2.0134 -3.0301 -4.4308 21 8 1.9942 -1.5996 -4.4351 22 6 3.2637 -1.0235 -4.1050 23 6 3.5546 -1.3051 -2.6283 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6808 -0.8904 27 1 4.1875 -2.6855 2.0861 28 1 4.5026 -4.2071 1.2180 29 1 2.4571 -4.5673 -2.8739 30 1 2.6108 -3.3900 -5.2684 31 1 0.9941 -3.4035 -4.5295 32 1 3.2325 0.0528 -4.2735 33 1 4.0414 -1.4717 -4.7234 34 1 2.9024 -0.6918 -2.0065 35 1 4.5951 -1.0637 -2.4107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331053649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = -195.364176 kcal Electronic energy + Delta-G solvation = -25328.553056 eV Core-core repulsion = 21106.091061 eV Total energy + Delta-G solvation = -4222.461995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83213 -47.38178 -47.28683 -40.02856 -38.30836 -35.64481 -33.60279 -32.62985 -30.90251 -29.67758 -27.73886 -25.64463 -23.81883 -22.96711 -22.77412 -19.99809 -18.45997 -18.27104 -17.94028 -17.27086 -17.09738 -16.46847 -16.02390 -15.47341 -15.03211 -14.66712 -14.33413 -14.22387 -14.12362 -13.99917 -13.76979 -13.50318 -13.47774 -13.42870 -13.09728 -12.67901 -12.58491 -12.21099 -12.14824 -11.93149 -11.48244 -11.10103 -11.06496 -10.68610 -10.48040 -10.21901 -9.85168 -9.63054 -9.05642 -8.78530 -8.57387 -8.16340 -6.28748 -4.31311 1.88049 2.95673 3.10667 3.17835 3.20892 3.27643 3.62537 4.13221 4.17981 4.18649 4.28756 4.56085 4.93610 5.01695 5.14614 5.27871 5.35322 5.50239 5.54471 5.57574 5.63543 5.82123 5.95349 6.03644 6.12958 6.52748 6.58849 6.74977 6.89424 7.03275 7.29773 7.39948 7.78298 8.24024 8.56677 8.76749 9.27225 10.83479 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.008372 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.994772 B = 3343.653074 C = 4674.346336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.083 3.917 3 Si 0.858 3.142 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.180 3.820 10 N -0.587 5.587 11 C 0.077 3.923 12 C 0.431 3.569 13 F -0.183 7.183 14 F -0.187 7.187 15 F -0.180 7.180 16 C 0.567 3.433 17 O -0.555 6.555 18 C -0.111 4.111 19 C -0.143 4.143 20 C 0.094 3.906 21 O -0.372 6.372 22 C 0.061 3.939 23 C -0.138 4.138 24 H 0.268 0.732 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.136 0.864 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -2.528 -3.226 9.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.122 4.122 3 Si 0.683 3.317 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.098 0.902 9 C 0.060 3.940 10 N -0.317 5.317 11 C -0.050 4.050 12 C 0.375 3.625 13 F -0.164 7.164 14 F -0.169 7.169 15 F -0.161 7.161 16 C 0.358 3.642 17 O -0.435 6.435 18 C -0.114 4.114 19 C -0.163 4.163 20 C 0.018 3.982 21 O -0.290 6.290 22 C -0.016 4.016 23 C -0.174 4.174 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.485 -2.866 -3.252 9.528 hybrid contribution 0.794 0.852 0.402 1.232 sum 9.280 -2.014 -2.850 9.914 Atomic orbital electron populations 1.69863 1.06150 1.27330 1.48366 1.24798 0.94700 0.98581 0.94112 0.87141 0.80778 0.84348 0.79393 1.19292 1.20594 1.18547 1.21208 0.88331 0.95224 1.53084 0.90228 1.20788 0.96620 0.77037 0.99518 1.47749 1.57266 1.16023 1.10666 1.22489 0.85431 1.04330 0.92745 1.21547 0.93105 0.74419 0.73414 1.93184 1.96469 1.30919 1.95862 1.93151 1.84891 1.82749 1.56096 1.93188 1.87578 1.88441 1.46921 1.18513 0.76866 0.85070 0.83769 1.90720 1.51608 1.16367 1.84819 1.20460 1.00748 0.96078 0.94112 1.23309 0.96487 1.00248 0.96248 1.21443 1.01547 0.81613 0.93608 1.88196 1.31950 1.18587 1.90250 1.22684 0.85531 0.98950 0.94430 1.21773 1.03030 0.94336 0.98289 0.92156 0.94212 0.92803 0.85863 0.85925 0.85840 0.91893 0.87707 0.88611 0.93430 0.84623 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.96 55.43 0.77 -23.98 16 2 C 0.08 2.14 5.25 -17.82 -0.09 2.05 16 3 Si 0.86 18.86 26.92 -169.99 -4.58 14.28 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 7 C -0.54 -13.51 7.67 -34.44 -0.26 -13.77 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.18 3.79 3.58 -5.20 -0.02 3.77 16 10 N -0.59 -11.57 2.46 -176.46 -0.43 -12.00 16 11 C 0.08 1.27 5.43 -4.04 -0.02 1.25 16 12 C 0.43 6.92 3.30 37.15 0.12 7.04 16 13 F -0.18 -3.04 16.61 2.25 0.04 -3.00 16 14 F -0.19 -2.77 17.32 2.25 0.04 -2.73 16 15 F -0.18 -3.17 16.68 2.25 0.04 -3.13 16 16 C 0.57 11.66 6.67 -12.67 -0.08 11.58 16 17 O -0.56 -12.09 15.96 5.26 0.08 -12.01 16 18 C -0.11 -2.14 4.97 -103.09 -0.51 -2.66 16 19 C -0.14 -2.49 9.53 -36.44 -0.35 -2.84 16 20 C 0.09 1.40 7.04 35.80 0.25 1.65 16 21 O -0.37 -6.49 10.85 -35.23 -0.38 -6.87 16 22 C 0.06 0.95 6.88 37.22 0.26 1.20 16 23 C -0.14 -2.49 3.99 -27.96 -0.11 -2.60 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.04 0.83 6.63 -51.92 -0.34 0.48 16 26 H 0.05 1.10 3.19 -51.93 -0.17 0.94 16 27 H 0.12 1.80 8.08 -51.93 -0.42 1.38 16 28 H 0.12 1.94 7.28 -51.93 -0.38 1.57 16 29 H 0.12 2.09 7.65 -52.48 -0.40 1.69 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.14 2.84 3.88 -51.92 -0.20 2.64 16 35 H 0.08 1.24 7.43 -51.93 -0.39 0.85 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -29.56 298.82 -4.31 -33.88 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.57 Total: 4.38 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -0.82 Total: 6.68 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.34 Total: -35.98 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.30 Total: -18.88 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.11 Total: -8.86 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.58 Total: 14.28 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.56 -4.31 -33.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331053649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.487 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds