Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48507 * 109.47101 * 269.99649 * 3 2 1 5 5 H 1.48499 * 109.47433 * 29.99552 * 3 2 1 6 6 H 1.48500 * 109.47086 * 150.00190 * 3 2 1 7 7 C 1.37877 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99496 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00292 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.46506 * 120.00138 * 250.70820 * 10 9 7 12 12 C 1.52993 * 109.47285 * 272.86499 * 11 10 9 13 13 F 1.39908 * 109.47385 * 65.04916 * 12 11 10 14 14 F 1.39899 * 109.47190 * 185.04408 * 12 11 10 15 15 F 1.39894 * 109.47251 * 305.04856 * 12 11 10 16 16 C 1.34774 * 120.00073 * 70.71325 * 10 9 7 17 17 O 1.21617 * 119.99944 * 184.34255 * 16 10 9 18 18 C 1.47101 * 120.00032 * 4.33360 * 16 10 9 19 19 C 1.32083 * 118.88069 * 211.48418 * 18 16 10 20 20 C 1.50268 * 122.58028 * 180.64784 * 19 18 16 21 21 O 1.43064 * 110.00452 * 343.87516 * 20 19 18 22 22 C 1.43269 * 112.91865 * 50.93617 * 21 20 19 23 23 C 1.50421 * 118.87594 * 31.50838 * 18 16 10 24 24 H 0.97002 * 119.99451 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46770 * 60.00450 * 9 7 2 26 26 H 1.08993 * 109.47557 * 300.00532 * 9 7 2 27 27 H 1.09005 * 109.46732 * 32.86409 * 11 10 9 28 28 H 1.08996 * 109.47002 * 152.86264 * 11 10 9 29 29 H 1.08005 * 118.70906 * 0.37439 * 19 18 16 30 30 H 1.09002 * 109.36255 * 104.26942 * 20 19 18 31 31 H 1.09002 * 109.36857 * 223.88142 * 20 19 18 32 32 H 1.08994 * 109.64045 * 171.27600 * 22 21 20 33 33 H 1.09000 * 109.64226 * 50.65929 * 22 21 20 34 34 H 1.09009 * 109.45080 * 283.37393 * 23 18 16 35 35 H 1.09001 * 109.45328 * 43.30230 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 6 4.6396 -3.1260 1.1975 12 6 6.1346 -2.8018 1.1718 13 9 6.3131 -1.4170 1.2616 14 9 6.7655 -3.4243 2.2541 15 9 6.6922 -3.2672 -0.0238 16 6 3.8605 -3.3394 -1.1014 17 8 4.1936 -4.5088 -1.0763 18 6 3.3055 -2.7590 -2.3338 19 6 2.6057 -3.5323 -3.1443 20 6 2.0134 -3.0301 -4.4308 21 8 1.9942 -1.5996 -4.4351 22 6 3.2637 -1.0235 -4.1050 23 6 3.5546 -1.3051 -2.6283 24 1 -0.4849 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6808 -0.8904 27 1 4.1875 -2.6855 2.0861 28 1 4.5026 -4.2071 1.2180 29 1 2.4571 -4.5673 -2.8739 30 1 2.6108 -3.3900 -5.2684 31 1 0.9941 -3.4035 -4.5295 32 1 3.2325 0.0528 -4.2735 33 1 4.0414 -1.4717 -4.7234 34 1 2.9024 -0.6918 -2.0065 35 1 4.5951 -1.0637 -2.4107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331053649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -214.581449 kcal Electronic energy + Delta-G solvation = -25329.386380 eV Core-core repulsion = 21106.091061 eV Total energy + Delta-G solvation = -4223.295318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.12963 -48.64707 -48.61796 -41.51309 -39.65279 -37.26857 -35.05993 -34.45045 -32.24628 -31.14133 -29.42004 -26.98879 -25.16899 -24.60617 -24.21119 -21.43610 -19.81718 -19.61313 -19.34749 -19.01586 -18.57652 -17.95502 -17.40075 -16.88847 -16.40683 -16.26440 -15.75650 -15.56451 -15.50853 -15.43268 -15.06264 -14.94930 -14.79142 -14.78025 -14.70033 -14.33904 -13.93218 -13.63773 -13.42970 -13.36349 -12.98732 -12.73444 -12.60440 -12.17336 -12.09558 -11.69842 -11.68171 -11.16045 -10.77251 -10.39123 -9.99123 -9.75186 -8.27429 -6.33986 0.43677 1.40071 1.42892 1.50321 1.62701 1.74136 2.17540 2.34651 2.80378 2.95889 3.00677 3.07114 3.25795 3.54410 3.82411 3.99061 4.05017 4.25837 4.35083 4.35960 4.45417 4.51239 4.54793 4.73056 4.78988 4.89256 5.17860 5.26460 5.38402 5.44535 5.60935 6.09756 6.20163 6.34077 6.69649 6.99779 7.28916 8.88563 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.012876 B = 0.008372 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.994772 B = 3343.653074 C = 4674.346336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.918 3.082 4 H -0.252 1.252 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.030 0.970 9 C 0.189 3.811 10 N -0.592 5.592 11 C 0.070 3.930 12 C 0.441 3.559 13 F -0.183 7.183 14 F -0.177 7.177 15 F -0.189 7.189 16 C 0.560 3.440 17 O -0.576 6.576 18 C -0.147 4.147 19 C -0.132 4.132 20 C 0.091 3.909 21 O -0.396 6.396 22 C 0.060 3.940 23 C -0.136 4.136 24 H 0.268 0.732 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 -1.707 -4.009 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.740 3.260 4 H -0.176 1.176 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.566 4.566 8 H 0.049 0.951 9 C 0.068 3.932 10 N -0.322 5.322 11 C -0.055 4.055 12 C 0.385 3.615 13 F -0.165 7.165 14 F -0.159 7.159 15 F -0.170 7.170 16 C 0.352 3.648 17 O -0.458 6.458 18 C -0.150 4.150 19 C -0.152 4.152 20 C 0.016 3.984 21 O -0.315 6.315 22 C -0.016 4.016 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.224 -2.057 -4.025 11.179 hybrid contribution 0.216 0.440 0.652 0.815 sum 10.441 -1.618 -3.373 11.091 Atomic orbital electron populations 1.70024 1.08271 1.28244 1.50822 1.25590 0.95256 1.02384 0.93669 0.86167 0.80130 0.79295 0.80381 1.17615 1.21301 1.16106 1.21217 0.90334 0.93189 1.51895 0.95123 1.20638 0.93841 0.78151 1.00550 1.47738 1.57335 1.15588 1.11492 1.22701 0.85826 1.04739 0.92284 1.21286 0.92591 0.74335 0.73313 1.93181 1.96447 1.31003 1.95857 1.93173 1.84634 1.82562 1.55504 1.93174 1.87677 1.88568 1.47626 1.18857 0.76548 0.84956 0.84451 1.90690 1.52671 1.17094 1.85314 1.20657 1.02723 0.97252 0.94378 1.23674 0.94641 1.00074 0.96833 1.21712 1.02882 0.80670 0.93185 1.88165 1.33271 1.19843 1.90224 1.22826 0.85621 1.00111 0.93034 1.21690 1.03060 0.92854 0.99688 0.92296 0.93150 0.91178 0.84020 0.85534 0.86021 0.88238 0.86313 0.87165 0.90659 0.87726 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 13.96 21.45 0.30 -53.63 16 2 C 0.03 1.61 5.25 84.65 0.44 2.05 16 3 Si 0.92 37.98 26.92 68.60 1.85 39.83 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 7 C -0.53 -26.74 7.67 25.60 0.20 -26.54 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 9 C 0.19 7.73 3.58 85.63 0.31 8.03 16 10 N -0.59 -22.92 2.46 -830.44 -2.04 -24.96 16 11 C 0.07 2.24 5.43 86.38 0.47 2.71 16 12 C 0.44 13.35 3.30 71.98 0.24 13.59 16 13 F -0.18 -5.65 16.61 44.97 0.75 -4.90 16 14 F -0.18 -4.88 17.32 44.97 0.78 -4.10 16 15 F -0.19 -6.39 16.68 44.97 0.75 -5.64 16 16 C 0.56 22.91 6.67 86.57 0.58 23.48 16 17 O -0.58 -25.06 15.96 -4.09 -0.07 -25.12 16 18 C -0.15 -5.59 4.97 -18.58 -0.09 -5.68 16 19 C -0.13 -4.49 9.53 24.59 0.23 -4.26 16 20 C 0.09 2.51 7.04 71.10 0.50 3.01 16 21 O -0.40 -13.08 10.85 -148.98 -1.62 -14.70 16 22 C 0.06 1.73 6.88 72.02 0.50 2.23 16 23 C -0.14 -4.72 3.99 29.80 0.12 -4.60 16 24 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.05 1.97 6.63 -2.38 -0.02 1.96 16 26 H 0.07 2.73 3.19 -2.39 -0.01 2.72 16 27 H 0.14 3.93 8.08 -2.38 -0.02 3.91 16 28 H 0.13 3.93 7.28 -2.39 -0.02 3.91 16 29 H 0.12 4.09 7.65 -2.91 -0.02 4.07 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.11 4.29 3.88 -2.38 -0.01 4.28 16 35 H 0.09 2.75 7.43 -2.39 -0.02 2.73 16 Total: -1.00 -64.60 298.82 5.27 -59.33 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.08 Total: 19.89 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 3.49 Total: 14.03 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.74 Total: -78.59 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.68 Total: -39.82 kcal Atomic # 9 Polarization: -16.92 SS G_CDS: 2.28 Total: -14.65 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.85 Total: 39.83 kcal Total: -64.60 5.27 -59.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331053649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.254 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds