Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 115.56440 * 2 1 4 4 C 1.53005 * 117.49491 * 145.68016 * 2 1 3 5 5 C 1.52997 * 60.03098 * 107.50362 * 4 2 1 6 6 H 1.09000 * 117.50357 * 252.49870 * 5 4 2 7 7 C 1.50707 * 117.50229 * 107.47657 * 5 4 2 8 8 O 1.21287 * 119.99727 * 291.39737 * 7 5 4 9 9 N 1.34769 * 120.00025 * 111.38948 * 7 5 4 10 10 C 1.39275 * 120.00071 * 174.43469 * 9 7 5 11 11 C 1.39465 * 119.83645 * 335.09503 * 10 9 7 12 12 C 1.36371 * 120.17803 * 179.97438 * 11 10 9 13 13 C 1.40886 * 119.84936 * 359.97438 * 12 11 10 14 14 C 1.41150 * 120.15893 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99734 * 34.92675 * 14 13 12 16 16 C 1.39899 * 120.00146 * 214.92373 * 14 13 12 17 17 N 1.30871 * 120.00111 * 355.19731 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 175.19222 * 16 14 13 19 19 H 1.48494 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46984 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.46892 * 240.00052 * 18 16 14 22 22 C 1.40842 * 119.68465 * 359.97438 * 13 12 11 23 23 C 1.36479 * 119.81598 * 359.74537 * 22 13 12 24 24 Cl 1.73596 * 119.92384 * 180.24982 * 23 22 13 25 25 H 1.09000 * 109.46887 * 325.71136 * 1 2 3 26 26 H 1.08996 * 109.46968 * 85.70462 * 1 2 3 27 27 H 1.08997 * 109.47413 * 205.70534 * 1 2 3 28 28 H 1.09001 * 109.47463 * 154.29516 * 3 2 1 29 29 H 1.09006 * 109.46446 * 274.29624 * 3 2 1 30 30 H 1.09000 * 109.47512 * 34.28734 * 3 2 1 31 31 H 1.08998 * 117.49953 * 0.02562 * 4 2 1 32 32 H 1.08997 * 117.49854 * 215.00193 * 4 2 1 33 33 H 0.97002 * 119.99879 * 354.43672 * 9 7 5 34 34 H 1.08006 * 119.91140 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.07583 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00185 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.08969 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1209 0.7652 5 6 2.2372 -1.1217 -0.7647 6 1 1.6124 -1.8596 -1.2681 7 6 3.5302 -0.7818 -1.4602 8 8 3.9726 0.3460 -1.4006 9 7 4.1951 -1.7310 -2.1481 10 6 5.3267 -1.3922 -2.8861 11 6 5.4874 -0.0868 -3.3500 12 6 6.5929 0.2526 -4.0728 13 6 7.5746 -0.7190 -4.3505 14 6 8.7217 -0.3747 -5.0976 15 1 9.1603 0.6066 -4.9920 16 6 9.2903 -1.3045 -5.9747 17 7 8.8169 -2.5231 -6.0335 18 14 10.7253 -0.8064 -7.0620 19 1 11.0698 0.6152 -6.8067 20 1 11.8993 -1.6625 -6.7552 21 1 10.3480 -0.9764 -8.4882 22 6 7.4067 -2.0352 -3.8782 23 6 6.2979 -2.3589 -3.1512 24 17 6.0912 -3.9787 -2.5621 25 1 -0.3633 0.8491 0.5790 26 1 -0.3633 0.0770 -1.0247 27 1 -0.3634 -0.9259 0.4457 28 1 3.1824 1.3085 0.4457 29 1 2.2775 1.7411 -1.0249 30 1 1.5811 2.0744 0.5789 31 1 1.6111 -1.8586 1.2682 32 1 3.1712 -0.8750 1.2688 33 1 3.8856 -2.6501 -2.1293 34 1 4.7344 0.6573 -3.1361 35 1 6.7155 1.2639 -4.4315 36 1 9.2114 -3.1679 -6.6413 37 1 8.1553 -2.7850 -4.0869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335039298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -5.389429 kcal Electronic energy + Delta-G solvation = -20685.946635 eV Core-core repulsion = 17454.288469 eV Total energy + Delta-G solvation = -3231.658167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23133 -38.22489 -36.73683 -35.53999 -34.41594 -33.02997 -29.83351 -29.44218 -28.79915 -27.43071 -25.59532 -23.60781 -21.77801 -20.89508 -19.85078 -18.94472 -17.59342 -16.78847 -16.45267 -15.36915 -14.93884 -14.55455 -14.22114 -14.14977 -13.68783 -13.35479 -13.19418 -12.93537 -12.59476 -12.49738 -12.27249 -11.99224 -11.83093 -11.67998 -11.41113 -11.23603 -11.09164 -10.96067 -10.53189 -10.35466 -10.19418 -10.08199 -9.89232 -9.77762 -9.45050 -9.12581 -8.76873 -7.56643 -6.97245 -6.72687 -4.45565 2.29734 2.80958 2.91524 3.05981 3.10840 3.13613 3.19668 3.55415 3.85617 3.91205 4.55880 4.62312 4.72007 4.83820 5.04608 5.23803 5.44608 5.51394 5.57854 5.63614 5.85129 5.90484 5.98992 6.06053 6.18934 6.20869 6.49513 6.58383 6.66274 6.86943 7.00822 7.14500 7.31390 7.56937 7.65801 7.87626 8.08629 8.16048 8.43141 8.67543 8.78635 8.82106 10.18203 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.003889 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.556901 B = 7198.019947 C = 8027.421828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.095 4.095 3 C -0.103 4.103 4 C -0.149 4.149 5 C -0.186 4.186 6 H 0.119 0.881 7 C 0.530 3.470 8 O -0.525 6.525 9 N -0.646 5.646 10 C 0.020 3.980 11 C -0.086 4.086 12 C -0.198 4.198 13 C 0.105 3.895 14 C -0.456 4.456 15 H 0.081 0.919 16 C 0.069 3.931 17 N -0.806 5.806 18 Si 0.918 3.082 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.133 4.133 23 C -0.027 4.027 24 Cl -0.120 7.120 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.399 0.601 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.280 0.720 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 -0.354 7.860 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.186 4.186 5 C -0.207 4.207 6 H 0.137 0.863 7 C 0.317 3.683 8 O -0.403 6.403 9 N -0.288 5.288 10 C -0.074 4.074 11 C -0.106 4.106 12 C -0.218 4.218 13 C 0.102 3.898 14 C -0.487 4.487 15 H 0.099 0.901 16 C -0.147 4.147 17 N -0.433 5.433 18 Si 0.742 3.258 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.153 4.153 23 C -0.056 4.056 24 Cl -0.092 7.092 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.234 0.766 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.838 0.086 7.823 13.367 hybrid contribution 0.447 -0.811 -0.650 1.132 sum -10.390 -0.726 7.174 12.647 Atomic orbital electron populations 1.21388 0.91760 1.01982 1.02112 1.21572 0.94418 0.91983 1.01541 1.21356 0.99640 0.92248 1.02727 1.23206 1.02958 1.01329 0.91155 1.22376 0.97930 1.04727 0.95657 0.86296 1.19563 0.84748 0.85203 0.78746 1.90644 1.67898 1.20933 1.60776 1.43000 1.27253 1.11431 1.47155 1.16989 0.89780 0.94570 1.06064 1.20529 0.98954 0.93820 0.97277 1.20933 0.95273 0.99781 1.05838 1.17609 0.92352 0.90352 0.89520 1.19533 1.09360 1.00025 1.19755 0.90098 1.25921 0.97206 0.94203 0.97349 1.69742 1.37446 1.03763 1.32341 0.86099 0.80274 0.79884 0.79494 1.18478 1.19892 1.19883 1.21212 0.96566 0.99248 0.98304 1.20403 0.97612 0.82799 1.04752 1.98249 1.97303 1.25280 1.88355 0.91757 0.92030 0.92441 0.91525 0.91260 0.93597 0.88120 0.88245 0.76615 0.85646 0.87887 0.90880 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.85 37.16 0.37 -0.65 16 2 C -0.09 -1.09 2.70 -154.47 -0.42 -1.51 16 3 C -0.10 -1.34 8.09 37.16 0.30 -1.04 16 4 C -0.15 -1.64 9.52 -26.73 -0.25 -1.89 16 5 C -0.19 -2.36 5.92 -91.73 -0.54 -2.90 16 6 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.53 9.10 7.39 -10.99 -0.08 9.02 16 8 O -0.53 -10.45 10.24 5.55 0.06 -10.40 16 9 N -0.65 -11.71 5.16 -9.71 -0.05 -11.76 16 10 C 0.02 0.44 6.44 -83.52 -0.54 -0.10 16 11 C -0.09 -1.98 8.64 -39.80 -0.34 -2.33 16 12 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 13 C 0.10 2.72 5.55 -106.81 -0.59 2.13 16 14 C -0.46 -11.76 9.02 -37.86 -0.34 -12.10 16 15 H 0.08 2.01 7.85 -52.49 -0.41 1.59 16 16 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 17 N -0.81 -20.34 10.60 55.55 0.59 -19.76 16 18 Si 0.92 18.46 29.56 -169.99 -5.03 13.43 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.13 -3.36 8.38 -39.23 -0.33 -3.69 16 23 C -0.03 -0.63 6.30 -39.72 -0.25 -0.88 16 24 Cl -0.12 -2.32 27.75 -51.86 -1.44 -3.76 16 25 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 28 H 0.07 0.98 7.01 -51.93 -0.36 0.62 16 29 H 0.07 1.02 7.26 -51.93 -0.38 0.65 16 30 H 0.05 0.50 7.92 -51.93 -0.41 0.08 16 31 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.40 6.31 7.74 -40.82 -0.32 5.99 16 34 H 0.13 2.84 5.76 -52.48 -0.30 2.53 16 35 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.14 3.81 6.13 -52.49 -0.32 3.48 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -27.38 321.83 -9.08 -36.47 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.57 Total: 10.46 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -3.50 Total: -19.54 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.54 Total: -31.52 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.40 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.44 Total: -3.76 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.38 -9.08 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335039298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.080 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds