Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 115.56440 * 2 1 4 4 C 1.53005 * 117.49491 * 145.68016 * 2 1 3 5 5 C 1.52997 * 60.03098 * 107.50362 * 4 2 1 6 6 H 1.09000 * 117.50357 * 252.49870 * 5 4 2 7 7 C 1.50707 * 117.50229 * 107.47657 * 5 4 2 8 8 O 1.21287 * 119.99727 * 291.39737 * 7 5 4 9 9 N 1.34769 * 120.00025 * 111.38948 * 7 5 4 10 10 C 1.39275 * 120.00071 * 174.43469 * 9 7 5 11 11 C 1.39465 * 119.83645 * 335.09503 * 10 9 7 12 12 C 1.36371 * 120.17803 * 179.97438 * 11 10 9 13 13 C 1.40886 * 119.84936 * 359.97438 * 12 11 10 14 14 C 1.41150 * 120.15893 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99734 * 34.92675 * 14 13 12 16 16 C 1.39899 * 120.00146 * 214.92373 * 14 13 12 17 17 N 1.30871 * 120.00111 * 355.19731 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 175.19222 * 16 14 13 19 19 H 1.48494 * 109.47186 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46984 * 120.00102 * 18 16 14 21 21 H 1.48504 * 109.46892 * 240.00052 * 18 16 14 22 22 C 1.40842 * 119.68465 * 359.97438 * 13 12 11 23 23 C 1.36479 * 119.81598 * 359.74537 * 22 13 12 24 24 Cl 1.73596 * 119.92384 * 180.24982 * 23 22 13 25 25 H 1.09000 * 109.46887 * 325.71136 * 1 2 3 26 26 H 1.08996 * 109.46968 * 85.70462 * 1 2 3 27 27 H 1.08997 * 109.47413 * 205.70534 * 1 2 3 28 28 H 1.09001 * 109.47463 * 154.29516 * 3 2 1 29 29 H 1.09006 * 109.46446 * 274.29624 * 3 2 1 30 30 H 1.09000 * 109.47512 * 34.28734 * 3 2 1 31 31 H 1.08998 * 117.49953 * 0.02562 * 4 2 1 32 32 H 1.08997 * 117.49854 * 215.00193 * 4 2 1 33 33 H 0.97002 * 119.99879 * 354.43672 * 9 7 5 34 34 H 1.08006 * 119.91140 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.07583 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00185 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.08969 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1209 0.7652 5 6 2.2372 -1.1217 -0.7647 6 1 1.6124 -1.8596 -1.2681 7 6 3.5302 -0.7818 -1.4602 8 8 3.9726 0.3460 -1.4006 9 7 4.1951 -1.7310 -2.1481 10 6 5.3267 -1.3922 -2.8861 11 6 5.4874 -0.0868 -3.3500 12 6 6.5929 0.2526 -4.0728 13 6 7.5746 -0.7190 -4.3505 14 6 8.7217 -0.3747 -5.0976 15 1 9.1603 0.6066 -4.9920 16 6 9.2903 -1.3045 -5.9747 17 7 8.8169 -2.5231 -6.0335 18 14 10.7253 -0.8064 -7.0620 19 1 11.0698 0.6152 -6.8067 20 1 11.8993 -1.6625 -6.7552 21 1 10.3480 -0.9764 -8.4882 22 6 7.4067 -2.0352 -3.8782 23 6 6.2979 -2.3589 -3.1512 24 17 6.0912 -3.9787 -2.5621 25 1 -0.3633 0.8491 0.5790 26 1 -0.3633 0.0770 -1.0247 27 1 -0.3634 -0.9259 0.4457 28 1 3.1824 1.3085 0.4457 29 1 2.2775 1.7411 -1.0249 30 1 1.5811 2.0744 0.5789 31 1 1.6111 -1.8586 1.2682 32 1 3.1712 -0.8750 1.2688 33 1 3.8856 -2.6501 -2.1293 34 1 4.7344 0.6573 -3.1361 35 1 6.7155 1.2639 -4.4315 36 1 9.2114 -3.1679 -6.6413 37 1 8.1553 -2.7850 -4.0869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335039298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -18.751314 kcal Electronic energy + Delta-G solvation = -20686.526050 eV Core-core repulsion = 17454.288469 eV Total energy + Delta-G solvation = -3232.237582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60797 -39.74725 -38.09310 -37.26336 -36.06941 -34.78304 -31.35341 -31.19326 -30.13447 -28.30528 -27.26236 -24.97414 -23.50957 -22.57767 -21.20620 -20.07817 -19.41526 -18.19823 -17.99829 -17.16235 -16.27681 -16.01661 -15.81442 -15.32576 -14.95132 -14.75447 -14.52376 -14.50471 -14.22178 -13.85304 -13.50960 -13.44445 -13.15385 -12.88080 -12.79509 -12.74724 -12.62106 -12.20573 -12.10322 -12.01994 -11.87291 -11.59161 -11.26799 -11.13099 -10.88128 -10.67279 -10.29083 -9.42501 -8.78236 -8.55607 -6.38368 0.57205 0.92790 1.35966 1.40925 1.41437 1.55685 1.69309 2.21091 2.23502 2.68894 2.83922 3.52741 3.64073 3.73403 3.87259 4.14267 4.21704 4.35712 4.65235 4.71516 4.84278 4.85013 4.88330 4.97949 5.02759 5.09166 5.11892 5.13747 5.21727 5.28596 5.35152 5.44934 5.57237 5.69111 5.83947 6.02681 6.21758 6.51066 6.63498 6.85107 6.89655 7.31029 8.37353 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.003889 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.556901 B = 7198.019947 C = 8027.421828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.101 4.101 4 C -0.134 4.134 5 C -0.195 4.195 6 H 0.147 0.853 7 C 0.526 3.474 8 O -0.556 6.556 9 N -0.645 5.645 10 C 0.032 3.968 11 C -0.094 4.094 12 C -0.208 4.208 13 C 0.076 3.924 14 C -0.491 4.491 15 H 0.079 0.921 16 C 0.030 3.970 17 N -0.835 5.835 18 Si 0.990 3.010 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.267 1.267 22 C -0.150 4.150 23 C -0.036 4.036 24 Cl -0.087 7.087 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 -1.201 8.747 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.171 4.171 5 C -0.216 4.216 6 H 0.165 0.835 7 C 0.316 3.684 8 O -0.435 6.435 9 N -0.288 5.288 10 C -0.063 4.063 11 C -0.114 4.114 12 C -0.228 4.228 13 C 0.073 3.927 14 C -0.521 4.521 15 H 0.097 0.903 16 C -0.183 4.183 17 N -0.462 5.462 18 Si 0.811 3.189 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.192 1.192 22 C -0.171 4.171 23 C -0.064 4.064 24 Cl -0.059 7.059 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.610 -0.780 8.738 15.362 hybrid contribution 0.863 -0.561 -0.788 1.297 sum -11.747 -1.341 7.950 14.247 Atomic orbital electron populations 1.21401 0.89145 1.03588 1.02623 1.21722 0.96162 0.90707 1.00974 1.21286 0.99058 0.94213 1.01299 1.23325 1.02717 1.01484 0.89570 1.22408 0.95842 1.06601 0.96701 0.83512 1.20459 0.85702 0.84369 0.77909 1.90638 1.68943 1.22269 1.61621 1.43044 1.26242 1.12541 1.47015 1.17075 0.90515 0.93879 1.04810 1.20644 0.98759 0.94635 0.97387 1.21083 0.95579 0.99944 1.06197 1.17900 0.93209 0.91169 0.90439 1.19748 1.10408 1.00624 1.21314 0.90320 1.26754 0.99545 0.93907 0.98109 1.69807 1.38683 1.04660 1.33094 0.85030 0.76862 0.79524 0.77506 1.18270 1.19025 1.19212 1.21109 0.97395 0.98894 0.99665 1.20430 0.97026 0.84705 1.04261 1.98245 1.97151 1.22663 1.87802 0.90762 0.91987 0.90373 0.93982 0.93652 0.91381 0.84658 0.89754 0.75101 0.85318 0.87355 0.90227 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.85 71.98 0.71 -0.82 16 2 C -0.10 -1.94 2.70 -52.16 -0.14 -2.08 16 3 C -0.10 -2.57 8.09 71.98 0.58 -1.99 16 4 C -0.13 -2.51 9.52 30.59 0.29 -2.22 16 5 C -0.19 -4.44 5.92 -11.51 -0.07 -4.50 16 6 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 7 C 0.53 17.57 7.39 87.66 0.65 18.22 16 8 O -0.56 -22.31 10.24 -3.05 -0.03 -22.35 16 9 N -0.64 -22.73 5.16 -303.02 -1.56 -24.29 16 10 C 0.03 1.43 6.44 38.58 0.25 1.68 16 11 C -0.09 -4.45 8.64 22.13 0.19 -4.26 16 12 C -0.21 -10.48 9.74 22.48 0.22 -10.26 16 13 C 0.08 4.09 5.55 -21.28 -0.12 3.97 16 14 C -0.49 -26.21 9.02 23.39 0.21 -26.00 16 15 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 16 C 0.03 1.49 5.42 85.24 0.46 1.95 16 17 N -0.84 -43.06 10.60 21.82 0.23 -42.83 16 18 Si 0.99 38.18 29.56 68.60 2.03 40.20 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 C -0.15 -7.83 8.38 22.50 0.19 -7.64 16 23 C -0.04 -1.64 6.30 22.18 0.14 -1.50 16 24 Cl -0.09 -3.29 27.75 -2.72 -0.08 -3.36 16 25 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.79 7.90 -2.39 -0.02 0.77 16 28 H 0.04 1.24 7.01 -2.39 -0.02 1.23 16 29 H 0.04 1.35 7.26 -2.38 -0.02 1.33 16 30 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 31 H 0.14 1.65 8.05 -2.39 -0.02 1.63 16 32 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 33 H 0.41 12.26 7.74 -92.71 -0.72 11.54 16 34 H 0.13 5.96 5.76 -2.91 -0.02 5.94 16 35 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 36 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 37 H 0.13 7.03 6.13 -2.91 -0.02 7.01 16 Total: -1.00 -61.32 321.83 4.54 -56.78 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.38 Total: 31.29 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 3.56 Total: -35.45 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -1.33 Total: -67.12 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.03 Total: -22.35 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 17 Polarization: -3.29 SS G_CDS: -0.08 Total: -3.36 kcal Total: -61.32 4.54 -56.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335039298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.028 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds