Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34226 * 125.76917 * 2 1 4 4 N 1.39128 * 107.11363 * 179.97438 * 3 2 1 5 5 C 1.36231 * 139.29655 * 179.97438 * 4 3 2 6 6 C 1.33012 * 116.10811 * 180.02562 * 5 4 3 7 7 C 1.46864 * 125.22381 * 179.97438 * 6 5 4 8 8 O 1.21668 * 120.00361 * 8.18574 * 7 6 5 9 9 N 1.34777 * 119.99974 * 188.18709 * 7 6 5 10 10 C 1.46501 * 120.00011 * 359.19044 * 9 7 6 11 11 C 1.46505 * 120.00140 * 179.18519 * 9 7 6 12 12 H 1.09000 * 109.47103 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47296 * 240.00450 * 11 9 7 14 14 C 1.50697 * 109.46806 * 120.00030 * 11 9 7 15 15 H 1.07996 * 120.00443 * 0.02562 * 14 11 9 16 16 C 1.37880 * 120.00121 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99724 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00234 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47637 * 90.00273 * 18 16 14 20 20 H 1.48509 * 109.47027 * 209.99980 * 18 16 14 21 21 H 1.48505 * 109.47222 * 329.99549 * 18 16 14 22 22 S 1.75800 * 109.54709 * 0.24019 * 6 5 4 23 23 C 1.35447 * 106.45477 * 359.97438 * 4 3 2 24 24 N 1.32271 * 108.77933 * 359.97438 * 23 4 3 25 25 H 1.09004 * 109.46760 * 90.00381 * 1 2 3 26 26 H 1.09001 * 109.47248 * 210.00398 * 1 2 3 27 27 H 1.08998 * 109.47283 * 330.00871 * 1 2 3 28 28 H 1.07999 * 126.44298 * 359.97438 * 3 2 1 29 29 H 1.07994 * 121.94568 * 0.02562 * 5 4 3 30 30 H 1.08994 * 109.46925 * 276.40244 * 10 9 7 31 31 H 1.09002 * 109.47068 * 36.40523 * 10 9 7 32 32 H 1.08997 * 109.47011 * 156.40410 * 10 9 7 33 33 H 1.08996 * 109.47572 * 59.99712 * 13 11 9 34 34 H 1.09002 * 109.46850 * 299.99616 * 13 11 9 35 35 H 1.09001 * 109.46880 * 180.02562 * 13 11 9 36 36 H 0.97005 * 119.99953 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0891 0.0000 4 7 3.6097 0.6440 0.0006 5 6 4.8724 1.1554 0.0005 6 6 5.8633 0.2681 0.0008 7 6 7.2947 0.5968 0.0003 8 8 7.6543 1.7495 0.1495 9 7 8.2100 -0.3785 -0.1656 10 6 7.7777 -1.7689 -0.3276 11 6 9.6372 -0.0483 -0.1840 12 1 9.7633 1.0260 -0.0496 13 6 10.2408 -0.4691 -1.5254 14 6 10.3363 -0.7793 0.9330 15 1 9.7740 -1.4256 1.5906 16 6 11.6940 -0.6231 1.1156 17 7 12.3788 0.1643 0.3151 18 14 12.5608 -1.5299 2.4997 19 1 13.0302 -2.8504 2.0089 20 1 13.7246 -0.7315 2.9620 21 1 11.6169 -1.7284 3.6288 22 16 5.1963 -1.3585 -0.0057 23 6 3.5577 -0.7094 0.0015 24 7 2.2900 -1.0868 0.0021 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9616 2.1174 -0.0004 29 1 5.0580 2.2193 0.0002 30 1 7.6045 -2.2121 0.6530 31 1 6.8551 -1.7974 -0.9073 32 1 8.5520 -2.3317 -0.8490 33 1 9.7351 0.0596 -2.3333 34 1 10.1148 -1.5435 -1.6594 35 1 11.3028 -0.2238 -1.5389 36 1 13.3341 0.2739 0.4433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335767309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = 68.991902 kcal Electronic energy + Delta-G solvation = -20787.250528 eV Core-core repulsion = 17593.154235 eV Total energy + Delta-G solvation = -3194.096293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.68131 -39.43786 -36.66504 -35.54188 -33.10614 -31.50004 -30.89239 -29.60190 -27.01632 -26.64045 -25.32887 -24.49149 -22.46788 -20.87560 -20.26122 -18.59708 -18.28277 -16.86257 -16.27869 -16.24223 -15.82557 -15.66269 -14.81676 -14.74130 -14.28155 -13.61931 -13.44556 -13.36742 -13.09597 -12.82269 -12.71452 -12.50418 -12.15706 -11.68947 -11.45167 -11.18360 -10.98443 -10.90407 -10.76630 -10.41726 -10.33558 -10.26744 -10.20278 -9.54550 -9.29344 -8.78764 -8.53759 -7.98130 -7.59072 -6.17416 -4.26301 0.55722 0.93382 1.55877 2.02864 2.40329 2.73457 3.21685 3.29327 3.31639 3.45861 3.62522 4.30155 4.35140 4.52510 4.79330 4.93545 5.12649 5.14484 5.24528 5.34222 5.45227 5.54718 5.68829 5.72076 5.98981 6.02187 6.42364 6.61447 6.66412 6.73630 6.88563 7.16411 7.30542 7.58635 7.65146 7.86352 8.01655 8.24055 8.56196 8.79288 9.40674 10.87982 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.035387 B = 0.003694 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.070592 B = 7578.429387 C = 7796.402828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.043 3.957 3 C -0.065 4.065 4 N -0.404 5.404 5 C 0.113 3.887 6 C -0.234 4.234 7 C 0.583 3.417 8 O -0.532 6.532 9 N -0.578 5.578 10 C 0.071 3.929 11 C 0.260 3.740 12 H 0.068 0.932 13 C -0.149 4.149 14 C -0.531 4.531 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 S 0.238 5.762 23 C 0.113 3.887 24 N -0.464 5.464 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.181 0.819 29 H 0.192 0.808 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.014 0.986 34 H 0.032 0.968 35 H 0.097 0.903 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 -1.362 -2.552 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.196 4.196 4 N -0.081 5.081 5 C -0.022 4.022 6 C -0.357 4.357 7 C 0.367 3.633 8 O -0.411 6.411 9 N -0.308 5.308 10 C -0.076 4.076 11 C 0.161 3.839 12 H 0.086 0.914 13 C -0.208 4.208 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 S 0.491 5.509 23 C -0.250 4.250 24 N -0.189 5.189 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.199 0.801 29 H 0.209 0.791 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.352 -2.722 -2.504 16.765 hybrid contribution 0.132 1.670 0.751 1.836 sum -16.219 -1.051 -1.753 16.348 Atomic orbital electron populations 1.20093 0.86599 1.03128 1.02685 1.20827 0.96758 0.87892 1.03273 1.22546 0.79017 1.00974 1.17014 1.43627 1.05601 1.08183 1.50706 1.20491 0.80069 1.01513 1.00104 1.23906 0.99092 0.96735 1.15928 1.16626 0.82063 0.85979 0.78622 1.90815 1.79862 1.19242 1.51223 1.48177 1.09085 1.05503 1.68004 1.21809 0.98894 0.84854 1.02071 1.19108 0.71637 0.98962 0.94228 0.91386 1.22133 1.04433 0.98450 0.95770 1.21287 0.93133 1.28544 1.13978 0.92022 1.24883 0.97215 0.95123 0.96394 1.69869 1.08180 1.36880 1.37475 0.86457 0.79187 0.79499 0.82064 1.20499 1.21052 1.19826 1.85725 0.83681 1.01552 1.79964 1.28128 1.02632 0.84829 1.09424 1.70502 0.96813 1.29357 1.22194 0.90855 0.90691 0.90853 0.80138 0.79139 0.91674 0.92276 0.87849 0.96672 0.94851 0.88419 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.41 36.00 0.37 -0.19 16 2 C 0.04 0.54 7.05 -83.08 -0.59 -0.04 16 3 C -0.06 -0.78 11.92 -15.65 -0.19 -0.97 16 4 N -0.40 -5.78 3.14 -63.52 -0.20 -5.98 16 5 C 0.11 1.62 10.94 -17.41 -0.19 1.43 16 6 C -0.23 -3.75 6.14 -37.91 -0.23 -3.98 16 7 C 0.58 11.60 7.64 -12.77 -0.10 11.50 16 8 O -0.53 -12.30 16.10 5.22 0.08 -12.22 16 9 N -0.58 -11.67 2.75 -176.74 -0.49 -12.15 16 10 C 0.07 1.12 8.14 59.85 0.49 1.61 16 11 C 0.26 6.25 2.62 -69.08 -0.18 6.07 16 12 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 13 C -0.15 -3.34 8.96 37.16 0.33 -3.01 16 14 C -0.53 -13.64 8.37 -34.44 -0.29 -13.93 16 15 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 18 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 22 S 0.24 3.33 18.13 -107.50 -1.95 1.38 16 23 C 0.11 1.75 8.92 -88.51 -0.79 0.96 16 24 N -0.46 -7.29 11.32 -9.73 -0.11 -7.40 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.19 2.42 7.98 -52.49 -0.42 2.00 16 30 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 31 H 0.06 0.81 4.48 -22.21 -0.10 0.72 16 32 H 0.10 1.59 6.45 -51.93 -0.33 1.26 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 35 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -31.07 313.00 -7.72 -38.79 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.93 Total: -0.12 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.45 Total: 1.11 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.17 Total: -48.96 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.95 Total: 1.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.07 -7.72 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335767309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.779 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds